FvH4_6g04590

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016867
Physical Location & Seq
Forward (+)
2529320 .. 2529865
546 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04590.t1

Sequence Viewer

Length: 546 bp
ATGGAGGAGCTGACAGCTCCGGCGACGAAAGACTCGGACTTGAAGCAGCGGCAGAGGAGCTTCGGCAAAGCGTACACCACCTTCCAAACGCAGGCTGCTTCGCTCGTCGGGCTGACCCGCCAGTTCAAGGAGCTCCAGGCGCGGTGGGGGTCCACCGAGGCCTCGCTCCGGACACGGTTCCGAGAAGTCCGCGAACCGGAAAGGGAGGTCGGCGCCAGAGAGAAGCGGCTGGAGGAGAGAAAGGTGGAGATGGAAGCGCTGGAGAAGCAGCTGGAATCGAGTAAGTACCACTTGAGTTTTCTGAAGCCGTTGATTACTAAACATGTGGAAGAGCTTGATTTGTTGAAGGTGAGGGTGAGCGAGAAGAAGGAAGAGTTTGATATGGTTGAAAAGAGGGGTTTGGAATCGGCCGAGAGATTGGGAATTTTGGAGAAATGTGTGGTGGAGAAGATCAAGTTAAGCATTTGGATTCACTCCATACAAGTGAGAGGCAAGTTGAGGGCAACGAGCTTGATTGGAAGTTATAACATTCTGATTCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

182

Amino Acids

21.06

Weight (kDa)

9.49

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016867)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g04511 FvH4_6g04590 FvH4_6g04630
rosa_chinensis RchiOBHm_Chr3g0453101
rosa_laevigata RLG00000025537
rosa_multiflora Rmu_sc0009015.1_g000009
rosa_roxburghii Rroxscaffold_6G00430170
rosa_rugosa Rorug02G0646500 Rorug02G0646600
rosa_samantha Rh3AG049100 Rh3BG050300 Rh3CG050400 Rh3DG051100
rosa_wichuraiana Rw3G003760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AccB1I GGYRCC 1 cut(s) 212
AccII CGCG 2 cut(s) 142, 192
AccIII TCCGGA 1 cut(s) 168
AciI CCGC 5 cut(s) 49, 118, 142, 190, 226
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 1 cut(s) 423
AcuI CTGAAG 1 cut(s) 323
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 2 cut(s) 74, 287
AfeI AGCGCT 1 cut(s) 258
AfiI CCNNNNNNNGG 4 cut(s) 91, 127, 168, 196
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 4 cut(s) 43, 127, 346, 389
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 7 cut(s) 10, 17, 60, 133, 271, 334, 510
AluI AGCT 7 cut(s) 10, 17, 60, 133, 271, 334, 510
Alw21I GWGCWC 1 cut(s) 135
Aor13HI TCCGGA 1 cut(s) 168
Aor51HI AGCGCT 1 cut(s) 258
AoxI GGCC 2 cut(s) 159, 408
ApeKI GCWGC 3 cut(s) 46, 95, 268
ApoI RAATTY 1 cut(s) 423
AspLEI GCGC 3 cut(s) 142, 215, 259
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 361, 367
AvaII GGWCC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 135
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 58, 82, 280
BccI CCATC 1 cut(s) 244
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 137
BfoI RGCGCY 2 cut(s) 216, 260
BisI GCNGC 5 cut(s) 47, 50, 96, 227, 269
BlsI GCNGC 5 cut(s) 48, 51, 97, 228, 270
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 3 cut(s) 151, 179, 214
BmrFI CCNGG 1 cut(s) 137
BpmI CTGGAG 3 cut(s) 119, 251, 281
BpuEI CTTGAG 1 cut(s) 313
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 2 cut(s) 168, 196
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 127, 168, 196
Bse1I ACTGG 1 cut(s) 121
BseAI TCCGGA 1 cut(s) 168
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 4 cut(s) 91, 127, 168, 196
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 3 cut(s) 20, 70, 248
BseX3I CGGCCG 1 cut(s) 408
BseXI GCAGC 3 cut(s) 58, 82, 280
Bsh1236I CGCG 2 cut(s) 142, 192
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 2 cut(s) 161, 410
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 3 cut(s) 20, 169, 197
BslI CCNNNNNNNGG 4 cut(s) 91, 127, 168, 196
BsnI GGCC 2 cut(s) 161, 410
Bsp1286I GDGCHC 1 cut(s) 135
Bsp13I TCCGGA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 450
BspACI CCGC 5 cut(s) 49, 118, 142, 190, 226
BspANI GGCC 2 cut(s) 161, 410
BspEI TCCGGA 1 cut(s) 168
BspFNI CGCG 2 cut(s) 142, 192
BspLI GGNNCC 3 cut(s) 151, 179, 214
BspQI GCTCTTC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 212
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 450
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 2 cut(s) 324, 366
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 93
BstFNI CGCG 2 cut(s) 142, 192
BstH2I RGCGCY 2 cut(s) 216, 260
BstHHI GCGC 3 cut(s) 142, 215, 259
BstKTI GATC 1 cut(s) 453
BstMBI GATC 1 cut(s) 450
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 3 cut(s) 109, 139, 265
BstNI CCWGG 1 cut(s) 137
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 135
BstUI CGCG 2 cut(s) 142, 192
BstV1I GCAGC 3 cut(s) 58, 82, 280
BstZI CGGCCG 1 cut(s) 408
BsuRI GGCC 2 cut(s) 161, 410
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 3 cut(s) 142, 215, 259
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 73, 286
CviAII CATG 1 cut(s) 323
CviQI GTAC 2 cut(s) 73, 286
DinI GGCGCC 1 cut(s) 214
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 408
EagI CGGCCG 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 324, 366
EarI CTCTTC 2 cut(s) 324, 366
Ecl136II GAGCTC 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 408
Eco147I AGGCCT 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 258
Eco52I CGGCCG 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 135
EgeI GGCGCC 1 cut(s) 214
EheI GGCGCC 1 cut(s) 214
FaeI CATG 1 cut(s) 326
FaiI YATR 4 cut(s) 324, 383, 479, 525
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 1 cut(s) 322
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 5 cut(s) 47, 50, 96, 227, 269
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 5 cut(s) 47, 50, 96, 227, 269
GlaI GCGC 3 cut(s) 141, 214, 258
GluI GCNGC 5 cut(s) 47, 50, 96, 227, 269
GsuI CTGGAG 3 cut(s) 119, 251, 281
HaeII RGCGCY 2 cut(s) 216, 260
HaeIII GGCC 2 cut(s) 161, 410
HapII CCGG 3 cut(s) 20, 169, 197
HhaI GCGC 3 cut(s) 142, 215, 259
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 3 cut(s) 140, 213, 257
HinP1I GCGC 3 cut(s) 140, 213, 257
HinfI GANTC 5 cut(s) 32, 275, 404, 469, 535
HpaII CCGG 3 cut(s) 20, 169, 197
HphI GGTGA 2 cut(s) 361, 367
Hpy166II GTNNAC 2 cut(s) 75, 153
Hpy188I TCNGA 5 cut(s) 37, 182, 303, 534, 540
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 75, 153
Hpy99I CGWCG 2 cut(s) 28, 110
HpyAV CCTTC 3 cut(s) 91, 340, 361
HpyCH4III ACNGT 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 139, 265
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 3 cut(s) 140, 213, 257
KasI GGCGCC 1 cut(s) 212
Kpn2I TCCGGA 1 cut(s) 168
Kzo9I GATC 1 cut(s) 450
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 6 cut(s) 7, 22, 57, 130, 138, 171
Lsp1109I GCAGC 3 cut(s) 58, 82, 280
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MboII GAAGA 4 cut(s) 341, 376, 383, 460
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 1 cut(s) 423
Mly113I GGCGCC 1 cut(s) 213
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 9 cut(s) 48, 151, 172, 199, 226, 345, 387, 482, 492
MroI TCCGGA 1 cut(s) 168
MseI TTAA 1 cut(s) 458
MslI CAYNNNNRTG 1 cut(s) 482
MspA1I CMGCKG 2 cut(s) 49, 271
MspI CCGG 3 cut(s) 20, 169, 197
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 2 cut(s) 142, 192
MwoI GCNNNNNNNGC 3 cut(s) 109, 139, 265
NarI GGCGCC 1 cut(s) 213
NdeII GATC 1 cut(s) 450
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 3 cut(s) 151, 179, 214
NmeAIII GCCGAG 1 cut(s) 436
NspI RCATGY 1 cut(s) 326
PceI AGGCCT 1 cut(s) 161
PciI ACATGT 1 cut(s) 322
PciSI GCTCTTC 1 cut(s) 324
PfeI GAWTC 4 cut(s) 275, 404, 469, 535
PkrI GCNGC 5 cut(s) 48, 51, 97, 228, 270
PleI GAGTC 1 cut(s) 26
PluTI GGCGCC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 26
PscI ACATGT 1 cut(s) 322
PsiI TTATAA 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 3 cut(s) 151, 179, 214
PspPI GGNCC 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 2 cut(s) 74, 287
RsaNI GTAC 2 cut(s) 73, 286
RseI CAYNNNNRTG 1 cut(s) 482
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 5 cut(s) 47, 50, 96, 227, 269
Sau3AI GATC 1 cut(s) 450
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 135
SfoI GGCGCC 1 cut(s) 214
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 1 cut(s) 423
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 5 cut(s) 49, 118, 142, 190, 226
SspDI GGCGCC 1 cut(s) 212
SstI GAGCTC 1 cut(s) 135
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 278
TasI AATT 1 cut(s) 423
TauI GCSGC 2 cut(s) 52, 229
TfiI GAWTC 4 cut(s) 275, 404, 469, 535
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TseI GCWGC 3 cut(s) 46, 95, 268
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 423
XceI RCATGY 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.