Rmu_sc0009015.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009015.1
OG0016867
Physical Location & Seq
Forward (+)
26782 .. 28821
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009015.1_g000009.1.cds

Sequence Viewer

Length: 1839 bp
atggaagagacagctccggtgacggcgaaagactcggtcttgaagcggcagagaagcttcggcaaagcgtacaagacgttccaaacgcaggcgacttcgctcgtcgggttgacccggcagttcaaggagctccaggcgctgtgggggtccacggaggacgagctccggaagcggttccgggaagtccgggaccgggaaagggaggtcggcgagagagagaagcagttggaggagaaagaggcgaagtggaaggtcgagatggaagcgcagaagaaagaggtggaatcgggtaagcaccagttgcttttcctgaggccattgatcagtaaacgtgttcaagagcttgatggtttgaaagtgatggtgagtgagaagaagaaagagcgtgatttgatcgaaaaaaggggtttagagtggactgagagattgaattctgttgagaaatgtgtggaggagaagacgaaagaggtcgaggcgaaggagaaggaagtgagaggggtggaagggaggttgagggtttatagggaggagattgagatgaaggagagggagttgagtgggattttggggtcaattgaggagtgcaggagagaatgtggtttgaaagaagaggaaattgaagcaaaacgaacgtacatggatgaatgggagaaggagatggaattgaagagagaggaacttgttgatcagcttgatgctatgaaaatactagttagagagaaggggaaggagtgtgagttgatcgaaaatcgggttttggagtcatcaacgagatcgtattattttgggaaatgtgtagaagagaggaggaaagagtttgaggctaaggaaaaggagctgaaagaggttcagaggtgtattgagttgaaggagaggcaattagatgggattttgaagtcgattcaggagcacacgaaagaatgtgatttgaaaggaaagcaagttaaggcattggagtggtccattgagaaatgtgaaaaagagatggaattgaaaagggaggagtggtctcgtaagcttgagttgaaggagatggaactagaaaggttgtttgacaagtttgagttgagagggcaacaacttgagccgatagttgaagagcttcgtgttattgataagagggtggatggatgcttaaatgagggtctgtgtaaagagaggtacttgcagacatgtgaaaaattgatacaagaacgcgaaaggtgtttggattcagtgtcccatgaacttaagatgaaagagagccacattgatgaggaggccaaagagcttgaattgaagcaaataaaattttattctcaactgaagactcagcagttggaaacagaaaagcattttgcttcacttaaaaaatcgttagaacaacaagaacagtctttatatgcactccgaaagtcgatagaagaggtcaaaaagcttttggagaggcaacttgaacagcagggtggagtgattgaattgaaacaaaaaccatttgattctcagctattggaaagagaagggcaacttggttcaattggaaagtcaatagaagaatgtgataagcagttcaaaggagttcaaaagttggttcaagagcagaaaaagcatttggattcactatcccatacactccatataagagagacgcaagctgaaaagcagggcaaacagcttgaattgaagtttagacattctgattctgaagtgaataccaagcagttggaactcacccctgccgctgatgatatgattattcctcactctataagtgatcaacccaacatcaatagggatggtagaagcttcgaggtgatccctggaaataatgggtttgaacattgccaaattggttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

612

Amino Acids

72.53

Weight (kDa)

5.79

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016867)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g04511 FvH4_6g04590 FvH4_6g04630
rosa_chinensis RchiOBHm_Chr3g0453101
rosa_laevigata RLG00000025537
rosa_multiflora Rmu_sc0009015.1_g000009
rosa_roxburghii Rroxscaffold_6G00430170
rosa_rugosa Rorug02G0646500 Rorug02G0646600
rosa_samantha Rh3AG049100 Rh3BG050300 Rh3CG050400 Rh3DG051100
rosa_wichuraiana Rw3G003760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1197
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 3 cut(s) 46, 172, 1719
AclWI GGATC 1 cut(s) 1789
AcsI RAATTY 2 cut(s) 430, 1289
AcuI CTGAAG 2 cut(s) 1325, 1704
AfaI GTAC 3 cut(s) 71, 635, 1163
AfiI CCNNNNNNNGG 3 cut(s) 88, 193, 199
AflII CTTAAG 1 cut(s) 1229
AflIII ACRYGT 2 cut(s) 331, 1172
AhlI ACTAGT 1 cut(s) 709
AjnI CCWGG 2 cut(s) 132, 1798
AjuI GAANNNNNNNTTGG 4 cut(s) 1491, 1523, 1574, 1606
Alw21I GWGCWC 3 cut(s) 132, 165, 912
Alw26I GTCTC 3 cut(s) 2, 1014, 1619
AlwI GGATC 1 cut(s) 1789
AlwNI CAGNNNCTG 1 cut(s) 139
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 2 cut(s) 314, 1260
ApoI RAATTY 2 cut(s) 430, 1289
Asp700I GAANNNNTTC 2 cut(s) 173, 1101
AspLEI GCGC 2 cut(s) 139, 268
AspS9I GGNCC 3 cut(s) 147, 190, 960
AsuC2I CCSGG 4 cut(s) 115, 179, 188, 194
AsuHPI GGTGA 4 cut(s) 31, 376, 1702, 1804
AvaII GGWCC 3 cut(s) 147, 190, 960
AxyI CCTNAGG 1 cut(s) 311
BanII GRGCYC 2 cut(s) 132, 165
BbsI GAAGAC 2 cut(s) 464, 1313
Bbv12I GWGCWC 3 cut(s) 132, 165, 912
BccI CCATC 9 cut(s) 253, 341, 355, 652, 878, 979, 1027, 1121, 1769
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 134, 1800
BclI TGATCA 3 cut(s) 321, 685, 1753
BcnI CCSGG 4 cut(s) 115, 179, 188, 194
BcoDI GTCTC 3 cut(s) 2, 1014, 1619
BcuI ACTAGT 1 cut(s) 709
BfaI CTAG 2 cut(s) 710, 1040
BfoI RGCGCY 1 cut(s) 140
BfrI CTTAAG 1 cut(s) 1229
BisI GCNGC 2 cut(s) 47, 1719
BlsI GCNGC 2 cut(s) 48, 1720
Bme1390I CCNGG 6 cut(s) 115, 134, 179, 188, 194, 1800
Bme18I GGWCC 3 cut(s) 147, 190, 960
BmgT120I GGNCC 3 cut(s) 147, 190, 960
BmiI GGNNCC 3 cut(s) 148, 176, 191
BmrFI CCNGG 6 cut(s) 115, 134, 179, 188, 194, 1800
BmsI GCATC 2 cut(s) 685, 1121
BpiI GAAGAC 2 cut(s) 464, 1313
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 825
BpuEI CTTGAG 2 cut(s) 1040, 1103
BpuMI CCSGG 4 cut(s) 115, 179, 188, 194
BsaI GGTCTC 1 cut(s) 1014
BsaJI CCNNGG 2 cut(s) 150, 1798
BsaWI WCCGGW 2 cut(s) 16, 165
BsaXI ACNNNNNCTCC 8 cut(s) 536, 566, 580, 610, 722, 752, 992, 1022
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 193, 199
Bse1I ACTGG 1 cut(s) 298
Bse21I CCTNAGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 1819
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 2 cut(s) 134, 1800
BseDI CCNNGG 2 cut(s) 150, 1798
BseGI GGATG 4 cut(s) 646, 1132, 1136, 1780
BseLI CCNNNNNNNGG 3 cut(s) 88, 193, 199
BseMI GCAATG 1 cut(s) 1819
BseMII CTCAG 4 cut(s) 302, 411, 1325, 1496
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 7 cut(s) 245, 467, 542, 593, 820, 1016, 1271
BsgI GTGCAG 1 cut(s) 604
Bsh1236I CGCG 1 cut(s) 1197
BshFI GGCC 2 cut(s) 316, 1262
BsiHKAI GWGCWC 3 cut(s) 132, 165, 912
BsiSI CCGG 6 cut(s) 17, 115, 166, 178, 187, 193
BslFI GGGAC 2 cut(s) 203, 1204
BslI CCNNNNNNNGG 3 cut(s) 88, 193, 199
BsmAI GTCTC 3 cut(s) 2, 1014, 1619
BsmBI CGTCTC 1 cut(s) 1619
BsmFI GGGAC 2 cut(s) 203, 1204
BsnI GGCC 2 cut(s) 316, 1262
Bso31I GGTCTC 1 cut(s) 1014
Bsp1286I GDGCHC 3 cut(s) 132, 165, 912
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 7 cut(s) 321, 393, 685, 741, 773, 1753, 1794
BspACI CCGC 3 cut(s) 46, 172, 1719
BspANI GGCC 2 cut(s) 316, 1262
BspCNI CTCAG 4 cut(s) 303, 412, 1324, 1495
BspEI TCCGGA 1 cut(s) 165
BspFNI CGCG 1 cut(s) 1197
BspLI GGNNCC 3 cut(s) 148, 176, 191
BspPI GGATC 1 cut(s) 1789
BspQI GCTCTTC 1 cut(s) 1092
BspTI CTTAAG 1 cut(s) 1229
BspTNI GGTCTC 1 cut(s) 1014
BsrDI GCAATG 1 cut(s) 1819
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 150, 1798
BssMI GATC 7 cut(s) 321, 393, 685, 741, 773, 1753, 1794
Bst2UI CCWGG 2 cut(s) 134, 1800
Bst4CI ACNGT 1 cut(s) 1374
Bst6I CTCTTC 5 cut(s) 603, 662, 795, 1092, 1398
BstAFI CTTAAG 1 cut(s) 1229
BstAPI GCANNNNNTGC 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 90, 1632
BstDEI CTNAG 5 cut(s) 311, 420, 825, 1311, 1482
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 4 cut(s) 646, 1132, 1136, 1780
BstFNI CGCG 1 cut(s) 1197
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 2 cut(s) 139, 268
BstKTI GATC 7 cut(s) 324, 396, 688, 744, 776, 1756, 1797
BstMAI GTCTC 3 cut(s) 2, 1014, 1619
BstMBI GATC 7 cut(s) 321, 393, 685, 741, 773, 1753, 1794
BstMWI GCNNNNNNNGC 4 cut(s) 136, 169, 301, 1585
BstNI CCWGG 2 cut(s) 134, 1800
BstNSI RCATGY 1 cut(s) 1176
BstSCI CCNGG 6 cut(s) 113, 132, 177, 186, 192, 1798
BstUI CGCG 1 cut(s) 1197
BstV2I GAAGAC 2 cut(s) 464, 1313
BstXI CCANNNNNNTGG 1 cut(s) 1702
Bsu36I CCTNAGG 1 cut(s) 311
BsuRI GGCC 2 cut(s) 316, 1262
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 4 cut(s) 646, 1132, 1136, 1780
BtsIMutI CAGTG 1 cut(s) 1221
Cac8I GCNNGC 2 cut(s) 90, 1632
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 2 cut(s) 139, 268
Cfr13I GGNCC 3 cut(s) 147, 190, 960
CseI GACGC 1 cut(s) 1636
Csp6I GTAC 3 cut(s) 70, 634, 1162
CviAII CATG 3 cut(s) 637, 1173, 1223
CviQI GTAC 3 cut(s) 70, 634, 1162
DdeI CTNAG 5 cut(s) 311, 420, 825, 1311, 1482
DpnI GATC 7 cut(s) 323, 395, 687, 743, 775, 1755, 1796
DpnII GATC 7 cut(s) 321, 393, 685, 741, 773, 1753, 1794
Eam1104I CTCTTC 5 cut(s) 603, 662, 795, 1092, 1398
EarI CTCTTC 5 cut(s) 603, 662, 795, 1092, 1398
Ecl136II GAGCTC 2 cut(s) 130, 163
Eco24I GRGCYC 2 cut(s) 132, 165
Eco31I GGTCTC 1 cut(s) 1014
Eco47I GGWCC 3 cut(s) 147, 190, 960
Eco53kI GAGCTC 2 cut(s) 130, 163
Eco57I CTGAAG 2 cut(s) 1325, 1704
Eco81I CCTNAGG 1 cut(s) 311
EcoICRI GAGCTC 2 cut(s) 130, 163
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 132, 1798
EcoT38I GRGCYC 2 cut(s) 132, 165
Esp3I CGTCTC 1 cut(s) 1619
FaeI CATG 3 cut(s) 640, 1176, 1226
FalI AAGNNNNNCTT 2 cut(s) 1491, 1523
FaqI GGGAC 2 cut(s) 203, 1204
FatI CATG 3 cut(s) 636, 1172, 1222
FbaI TGATCA 3 cut(s) 321, 685, 1753
Fnu4HI GCNGC 2 cut(s) 47, 1719
FokI GGATG 4 cut(s) 653, 1139, 1143, 1787
FriOI GRGCYC 2 cut(s) 132, 165
Fsp4HI GCNGC 2 cut(s) 47, 1719
FspBI CTAG 2 cut(s) 710, 1040
GlaI GCGC 2 cut(s) 138, 267
GluI GCNGC 2 cut(s) 47, 1719
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 2 cut(s) 316, 1262
HapII CCGG 6 cut(s) 17, 115, 166, 178, 187, 193
HgaI GACGC 1 cut(s) 1636
HhaI GCGC 2 cut(s) 139, 268
Hin1II CATG 3 cut(s) 640, 1176, 1226
Hin6I GCGC 2 cut(s) 137, 266
HinP1I GCGC 2 cut(s) 137, 266
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HindIII AAGCTT 4 cut(s) 55, 1016, 1415, 1783
HinfI GANTC 9 cut(s) 32, 284, 761, 901, 1211, 1309, 1478, 1595, 1679
HpaII CCGG 6 cut(s) 17, 115, 166, 178, 187, 193
HphI GGTGA 4 cut(s) 31, 376, 1702, 1804
Hpy166II GTNNAC 4 cut(s) 111, 150, 329, 417
Hpy188I TCNGA 4 cut(s) 852, 1391, 1678, 1684
Hpy188III TCNNGA 7 cut(s) 40, 166, 256, 310, 338, 905, 1574
Hpy8I GTNNAC 4 cut(s) 111, 150, 329, 417
Hpy99I CGWCG 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 1374
HpyCH4IV ACGT 3 cut(s) 77, 331, 632
HpyCH4V TGCA 3 cut(s) 585, 1168, 1385
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 169, 301, 1585
HpyF3I CTNAG 5 cut(s) 311, 420, 825, 1311, 1482
HpySE526I ACGT 3 cut(s) 77, 331, 632
Hsp92II CATG 3 cut(s) 640, 1176, 1226
HspAI GCGC 2 cut(s) 137, 266
Kpn2I TCCGGA 1 cut(s) 165
Ksp22I TGATCA 3 cut(s) 321, 685, 1753
Kzo9I GATC 7 cut(s) 321, 393, 685, 741, 773, 1753, 1794
LguI GCTCTTC 1 cut(s) 1092
LmnI GCTCC 6 cut(s) 19, 127, 135, 168, 835, 907
LweI GCATC 2 cut(s) 685, 1121
MaeI CTAG 2 cut(s) 710, 1040
MaeII ACGT 3 cut(s) 77, 331, 632
MaeIII GTNAC 1 cut(s) 19
MalI GATC 7 cut(s) 323, 395, 687, 743, 775, 1755, 1796
MboI GATC 7 cut(s) 321, 393, 685, 741, 773, 1753, 1794
MfeI CAATTG 2 cut(s) 573, 1515
MhlI GDGCHC 3 cut(s) 132, 165, 912
MlyI GAGTC 3 cut(s) 26, 770, 1303
MmeI TCCRAC 3 cut(s) 207, 1299, 1683
MroI TCCGGA 1 cut(s) 165
MroXI GAANNNNTTC 2 cut(s) 173, 1101
MseI TTAA 4 cut(s) 945, 1136, 1230, 1347
MslI CAYNNNNRTG 2 cut(s) 955, 1251
MspA1I CMGCKG 1 cut(s) 1721
MspCI CTTAAG 1 cut(s) 1229
MspI CCGG 6 cut(s) 17, 115, 166, 178, 187, 193
MspR9I CCNGG 6 cut(s) 115, 134, 179, 188, 194, 1800
MunI CAATTG 2 cut(s) 573, 1515
MvaI CCWGG 2 cut(s) 134, 1800
MvnI CGCG 1 cut(s) 1197
MwoI GCNNNNNNNGC 4 cut(s) 136, 169, 301, 1585
NciI CCSGG 4 cut(s) 115, 179, 188, 194
NdeII GATC 7 cut(s) 321, 393, 685, 741, 773, 1753, 1794
NlaIII CATG 3 cut(s) 640, 1176, 1226
NlaIV GGNNCC 3 cut(s) 148, 176, 191
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 1176
PciI ACATGT 1 cut(s) 1172
PciSI GCTCTTC 1 cut(s) 1092
PdmI GAANNNNTTC 2 cut(s) 173, 1101
PfeI GAWTC 6 cut(s) 284, 901, 1211, 1478, 1595, 1679
PflFI GACNNNGTC 1 cut(s) 35
PfoI TCCNGGA 2 cut(s) 177, 186
PkrI GCNGC 2 cut(s) 48, 1720
PleI GAGTC 3 cut(s) 26, 769, 1303
PpsI GAGTC 3 cut(s) 26, 769, 1303
PscI ACATGT 1 cut(s) 1172
Psp124BI GAGCTC 2 cut(s) 132, 165
Psp6I CCWGG 2 cut(s) 132, 1798
PspGI CCWGG 2 cut(s) 132, 1798
PspN4I GGNNCC 3 cut(s) 148, 176, 191
PspPI GGNCC 3 cut(s) 147, 190, 960
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
PstNI CAGNNNCTG 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 35
RsaI GTAC 3 cut(s) 71, 635, 1163
RsaNI GTAC 3 cut(s) 70, 634, 1162
RseI CAYNNNNRTG 2 cut(s) 955, 1251
SacI GAGCTC 2 cut(s) 132, 165
SapI GCTCTTC 1 cut(s) 1092
SaqAI TTAA 4 cut(s) 945, 1136, 1230, 1347
SatI GCNGC 2 cut(s) 47, 1719
Sau3AI GATC 7 cut(s) 321, 393, 685, 741, 773, 1753, 1794
Sau96I GGNCC 3 cut(s) 147, 190, 960
SchI GAGTC 3 cut(s) 26, 770, 1303
ScrFI CCNGG 6 cut(s) 115, 134, 179, 188, 194, 1800
SduI GDGCHC 3 cut(s) 132, 165, 912
SfaNI GCATC 2 cut(s) 685, 1121
SinI GGWCC 3 cut(s) 147, 190, 960
SmiMI CAYNNNNRTG 2 cut(s) 955, 1251
SmlI CTYRAG 3 cut(s) 1019, 1082, 1229
SmoI CTYRAG 3 cut(s) 1019, 1082, 1229
SpeI ACTAGT 1 cut(s) 709
SsiI CCGC 3 cut(s) 46, 172, 1719
SspMI CTAG 2 cut(s) 710, 1040
SstI GAGCTC 2 cut(s) 132, 165
StyD4I CCNGG 6 cut(s) 113, 132, 177, 186, 192, 1798
TaaI ACNGT 1 cut(s) 1374
TaiI ACGT 3 cut(s) 80, 334, 635
TaqI TCGA 7 cut(s) 255, 396, 471, 744, 899, 1397, 1788
TaqII GACCGA 1 cut(s) 25
TauI GCSGC 2 cut(s) 49, 1721
TfiI GAWTC 6 cut(s) 284, 901, 1211, 1478, 1595, 1679
Tru1I TTAA 4 cut(s) 945, 1136, 1230, 1347
Tru9I TTAA 4 cut(s) 945, 1136, 1230, 1347
TscAI CASTG 1 cut(s) 1221
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 5 cut(s) 554, 657, 716, 1239, 1250
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 1221
Tth111I GACNNNGTC 1 cut(s) 35
Vha464I CTTAAG 1 cut(s) 1229
VpaK11BI GGWCC 3 cut(s) 147, 190, 960
XapI RAATTY 2 cut(s) 430, 1289
XceI RCATGY 1 cut(s) 1176
XmnI GAANNNNTTC 2 cut(s) 173, 1101
XspI CTAG 2 cut(s) 710, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.