Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006103

Physical Location & Seq

Genomic Coordinates Forward (+)

3086685 .. 3090773

Gene Structure 4089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05460.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAAGACGAAGACAGAGTGCATAACACAGAGTCGTCATCCCAGAAGAACAAGACGGTGATAAAGATACCGTCTTTCCAAGAAGTTATAGAGAGCTCGCAGTCAAAATCAACCCCACCTTCTCTGTTTGCTCCCTCCAAAACCTTTTCTCAAGCTTTCGCCTTTGTCAAATCTTCTGAGTTTTACTCTCCCCCAAAACCCGCAGAAACCTCTAACTCAAGGGAAACTGGGCAATTTGATGTTCCATCGTCATCTGCTCCTACCAATGCTGTTGCTTCTTCATCATCTGCGCAGCGTCGCAATGCGATTCTTGTCAGCAACAGACAGAAGGGAAACCCCTTGCTCAAACATATCAGAAATGTGAGGTGGGAATTTGCAGATATTGTTTGTGACTACTTACTCGGGCAAAGCTCATGTGCTCTCTATCTAAGTCTTCGTTATCATCTGCTGCATCCAGACTATCTATATTACCGCATTAGGGAATTGCAAAAGAACTACAAGCTTCGGGTCGTACTTTGCCATGTTGATGTGGAGGATGTAGTTAAGCCGTTACTTGAAGTGACTAAAACTGCCATGCTCCATGAGTGTACCCTATTATGTGCTTGGAGCTTGGAGGAATGTGGACGCTACTTGGAGACTATAAAAGTCTATGAAAACAAACCTGCTGACATTATTCAAGGTCAAATGGACACAGACTATTTATCACGGCTAAATCATGCATTAACAACTGTTCGACATGTTAACAAGACTGATGTTGTCACCCTTGGAACTACTTTTGGGTCTCTTTCTCATGTCATGGATGCTTCGATGGAAGATCTAGCTCGTTGCCCTGGCATAGGAGAGCGCAAGGTAAAATGTCTGTATGACACATTCCATGAACCATTTAAGCGTGTGGTTGCCAGCCGCCCTGCTGTTTCAGAATCTTCTCCGCCGGACAATGCTGAACCTTGTTCAGTGACTGAAGATAAAGAAACAAAGGATACCAAAGAAGAAAGCAAATGCAGGAAGAAAGAACCAGAACCAACTGTTAAGTCTGCCCTGTCTGCTGCTTTTGCCAAATATGCTGACAGAGTTAAAAAGAAGTCACCACAGTTGAAGAATGGAGATACAAGTGTTGCCATGGAAGCTGAAGCTGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000710 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006296 GO:0006298 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010212 GO:0010213 GO:0010224 GO:0010332 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048256 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070522 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03420 ko03460 map01524 map03420 map03460

Pfam Domains

Protein Families

HHH_2 HHH_5 Rad10

Protein Analysis

381

Amino Acids

42.64

Weight (kDa)

7.55

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad10	PF03834	103 - 215	5e-47	Binding domain of DNA repair protein Ercc1 (rad10/Swi10)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05210 AT3G05210
fragaria_vesca	FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460
malus_domestica	MD04G1208500.v1.1
prunus_persica	Prupe.6G329400_v2.0.a1 Prupe.6G329400_v2.0.a1 Prupe.6G329400_v2.0.a1 Prupe.6G329400_v2.0.a1
pyrus_communis	pycom04g18460
rosa_chinensis	RchiOBHm_Chr3g0454231
rosa_laevigata	RLG00000025474
rosa_multiflora	Rmu_sc0026184.1_g000002 Rmu_sc0038077.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437010 Rroxscaffold_6G00425350
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG056900 Rh3BG058300 Rh3CG057500 Rh3DG058800
rosa_wichuraiana	Rw3G004380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	670
AciI	CCGC	4 cut(s)	201, 472, 904, 929
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	981
AfaI	GTAC	2 cut(s)	513, 589
AfiI	CCNNNNNNNGG	2 cut(s)	478, 836
AflIII	ACRYGT	1 cut(s)	736
AgsI	TTSAA	3 cut(s)	557, 677, 1096
AjnI	CCWGG	1 cut(s)	829
AluBI	AGCT	8 cut(s)	96, 155, 411, 502, 609, 821, 1127, 1133
AluI	AGCT	8 cut(s)	96, 155, 411, 502, 609, 821, 1127, 1133
Alw21I	GWGCWC	2 cut(s)	98, 421
Alw26I	GTCTC	2 cut(s)	629, 786
AlwNI	CAGNNNCTG	1 cut(s)	959
Ama87I	CYCGRG	1 cut(s)	401
ApeKI	GCWGC	3 cut(s)	292, 448, 1046
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	292, 846
AsuHPI	GGTGA	3 cut(s)	70, 751, 1077
AvaI	CYCGRG	1 cut(s)	401
BaeI	ACNNNNGTAYC	2 cut(s)	1098, 1131
BanII	GRGCYC	1 cut(s)	98
BbsI	GAAGAC	3 cut(s)	12, 18, 425
Bbv12I	GWGCWC	2 cut(s)	98, 421
BbvI	GCAGC	3 cut(s)	304, 435, 1033
BccI	CCATC	2 cut(s)	253, 802
BceAI	ACGGC	2 cut(s)	532, 722
BciT130I	CCWGG	1 cut(s)	831
BciVI	GTATCC	1 cut(s)	973
BcoDI	GTCTC	2 cut(s)	629, 786
BfaI	CTAG	1 cut(s)	818
BfuAI	ACCTGC	1 cut(s)	670
BfuI	GTATCC	1 cut(s)	973
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	4 cut(s)	293, 449, 904, 1047
BlsI	GCNGC	4 cut(s)	294, 450, 905, 1048
Bme1390I	CCNGG	1 cut(s)	831
BmeT110I	CYCGRG	1 cut(s)	401
BmrFI	CCNGG	1 cut(s)	831
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	460, 790
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	3 cut(s)	12, 18, 425
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpuEI	CTTGAG	2 cut(s)	135, 202
BsaI	GGTCTC	1 cut(s)	786
BsaJI	CCNNGG	3 cut(s)	763, 829, 1119
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 836
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	831
BseDI	CCNNGG	3 cut(s)	763, 829, 1119
BseGI	GGATG	4 cut(s)	38, 451, 541, 805
BseLI	CCNNNNNNNGG	2 cut(s)	478, 836
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	3 cut(s)	304, 435, 1033
BsiHKAI	GWGCWC	2 cut(s)	98, 421
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	932
BslI	CCNNNNNNNGG	2 cut(s)	478, 836
BsmAI	GTCTC	2 cut(s)	629, 786
Bso31I	GGTCTC	1 cut(s)	786
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	98, 421
Bsp143I	GATC	1 cut(s)	814
Bsp19I	CCATGG	1 cut(s)	1119
BspACI	CCGC	4 cut(s)	201, 472, 904, 929
BspCNI	CTCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	670
BspTNI	GGTCTC	1 cut(s)	786
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	3 cut(s)	763, 829, 1119
BssMI	GATC	1 cut(s)	814
BssT1I	CCWWGG	2 cut(s)	763, 1119
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	5 cut(s)	58, 72, 730, 1027, 1092
BstC8I	GCNNGC	2 cut(s)	98, 901
BstDEI	CTNAG	2 cut(s)	177, 428
BstDSI	CCRYGG	1 cut(s)	1119
BstENI	CCTNNNNNAGG	1 cut(s)	834
BstF5I	GGATG	4 cut(s)	38, 451, 541, 805
BstHHI	GCGC	2 cut(s)	292, 846
BstKTI	GATC	1 cut(s)	817
BstMAI	GTCTC	2 cut(s)	629, 786
BstMBI	GATC	1 cut(s)	814
BstMWI	GCNNNNNNNGC	4 cut(s)	1043, 1052, 1061, 1124
BstNI	CCWGG	1 cut(s)	831
BstNSI	RCATGY	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	829
BstV1I	GCAGC	3 cut(s)	304, 435, 1033
BstV2I	GAAGAC	3 cut(s)	12, 18, 425
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuI	GTATCC	1 cut(s)	973
BtgI	CCRYGG	1 cut(s)	1119
BtsCI	GGATG	4 cut(s)	38, 451, 541, 805
BtsIMutI	CAGTG	1 cut(s)	960
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	2 cut(s)	98, 901
CaiI	CAGNNNCTG	1 cut(s)	959
CfoI	GCGC	2 cut(s)	292, 846
CseI	GACGC	2 cut(s)	284, 633
Csp6I	GTAC	2 cut(s)	512, 588
CviQI	GTAC	2 cut(s)	512, 588
DdeI	CTNAG	2 cut(s)	177, 428
DpnI	GATC	1 cut(s)	816
DpnII	GATC	1 cut(s)	814
EciI	GGCGGA	1 cut(s)	918
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	763, 1119
Eco24I	GRGCYC	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	786
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	981
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	96
EcoNI	CCTNNNNNAGG	1 cut(s)	834
EcoRII	CCWGG	1 cut(s)	829
EcoT14I	CCWWGG	2 cut(s)	763, 1119
EcoT22I	ATGCAT	1 cut(s)	721
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	2 cut(s)	763, 1119
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	4 cut(s)	293, 449, 904, 1047
FokI	GGATG	4 cut(s)	25, 438, 548, 812
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	4 cut(s)	293, 449, 904, 1047
FspBI	CTAG	1 cut(s)	818
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	2 cut(s)	291, 845
GluI	GCNGC	4 cut(s)	293, 449, 904, 1047
HapII	CCGG	1 cut(s)	932
HgaI	GACGC	2 cut(s)	284, 633
HhaI	GCGC	2 cut(s)	292, 846
Hin6I	GCGC	2 cut(s)	290, 844
HinP1I	GCGC	2 cut(s)	290, 844
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	2 cut(s)	153, 500
HinfI	GANTC	3 cut(s)	32, 307, 920
HpaI	GTTAAC	1 cut(s)	742
HpaII	CCGG	1 cut(s)	932
HphI	GGTGA	3 cut(s)	70, 751, 1077
Hpy166II	GTNNAC	3 cut(s)	588, 623, 742
Hpy188I	TCNGA	3 cut(s)	178, 356, 919
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	3 cut(s)	588, 623, 742
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	129, 322
HpyCH4III	ACNGT	5 cut(s)	58, 72, 730, 1027, 1092
HpyCH4V	TGCA	6 cut(s)	22, 377, 451, 487, 719, 1002
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1043, 1052, 1061, 1124
HpyF3I	CTNAG	2 cut(s)	177, 428
HspAI	GCGC	2 cut(s)	290, 844
KspAI	GTTAAC	1 cut(s)	742
Kzo9I	GATC	1 cut(s)	814
LmnI	GCTCC	4 cut(s)	136, 262, 582, 606
Lsp1109I	GCAGC	3 cut(s)	304, 435, 1033
LweI	GCATC	2 cut(s)	460, 790
MaeI	CTAG	1 cut(s)	818
MaeIII	GTNAC	6 cut(s)	389, 549, 559, 757, 955, 1083
MalI	GATC	1 cut(s)	816
MboI	GATC	1 cut(s)	814
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	2 cut(s)	98, 421
MluCI	AATT	3 cut(s)	233, 371, 482
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	5 cut(s)	145, 220, 357, 526, 607
Mph1103I	ATGCAT	1 cut(s)	721
MseI	TTAA	6 cut(s)	543, 722, 741, 885, 1029, 1074
MslI	CAYNNNNRTG	1 cut(s)	525
MspI	CCGG	1 cut(s)	932
MspR9I	CCNGG	1 cut(s)	831
MvaI	CCWGG	1 cut(s)	831
MwoI	GCNNNNNNNGC	4 cut(s)	1043, 1052, 1061, 1124
NcoI	CCATGG	1 cut(s)	1119
NdeII	GATC	1 cut(s)	814
NmuCI	GTSAC	5 cut(s)	389, 559, 757, 955, 1083
NsbI	TGCGCA	1 cut(s)	291
NsiI	ATGCAT	1 cut(s)	721
NspI	RCATGY	1 cut(s)	740
PciI	ACATGT	1 cut(s)	736
PfeI	GAWTC	2 cut(s)	307, 920
PkrI	GCNGC	4 cut(s)	294, 450, 905, 1048
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PscI	ACATGT	1 cut(s)	736
Psp124BI	GAGCTC	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	2 cut(s)	513, 589
RsaNI	GTAC	2 cut(s)	512, 588
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	6 cut(s)	543, 722, 741, 885, 1029, 1074
SatI	GCNGC	4 cut(s)	293, 449, 904, 1047
Sau3AI	GATC	1 cut(s)	814
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	831
SduI	GDGCHC	2 cut(s)	98, 421
SfaNI	GCATC	2 cut(s)	460, 790
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	150, 217
SmoI	CTYRAG	2 cut(s)	150, 217
Sse9I	AATT	3 cut(s)	233, 371, 482
SsiI	CCGC	4 cut(s)	201, 472, 904, 929
SspMI	CTAG	1 cut(s)	818
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	829
StyI	CCWWGG	2 cut(s)	763, 1119
TaaI	ACNGT	5 cut(s)	58, 72, 730, 1027, 1092
TaqI	TCGA	2 cut(s)	733, 806
TasI	AATT	3 cut(s)	233, 371, 482
TauI	GCSGC	1 cut(s)	906
TfiI	GAWTC	2 cut(s)	307, 920
Tru1I	TTAA	6 cut(s)	543, 722, 741, 885, 1029, 1074
Tru9I	TTAA	6 cut(s)	543, 722, 741, 885, 1029, 1074
TscAI	CASTG	1 cut(s)	960
TseFI	GTSAC	5 cut(s)	389, 559, 757, 955, 1083
TseI	GCWGC	3 cut(s)	292, 448, 1046
Tsp45I	GTSAC	5 cut(s)	389, 559, 757, 955, 1083
TspDTI	ATGAA	3 cut(s)	270, 666, 891
TspRI	CASTG	1 cut(s)	960
XagI	CCTNNNNNAGG	1 cut(s)	834
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	1 cut(s)	740
XspI	CTAG	1 cut(s)	818
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.