MD04G1208500.v1.1

DNA excision repair protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
29340048 .. 29343943
3896 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1208500.v1.1.491

Sequence Viewer

Length: 1194 bp
ATGGAAGACGAAGACGGAGGGCAAAATACAGAGTCGGACCTGAACAAAAACAAGAAGAAAACAGTGATAAAAATACCGTCTTTTCAAGAAGTACTCGAGAGCTCGCAGTCTAAATCCACCCCACCTTCTCTCTTCACTCCTTCACATAGCTTTTCTCAAGCATTTGCATTCGTCAAGTCCTCTGAGTTCTACTCGCCGCCTCCTCCCTCCACCGCCGCCTCACAACCGCCGCAGGCCTCAGACGCCACCAATTCGAGGCAAACTGGCCAATCTGATGTTCCGTCTTCATCATCTTCACCTGCGAATGCAGTTGCATCATCTTCATCTGTTCAGCGTCGCAATGCAATTCTTGTGAGCCACAGACAGAAGGGAAACCCATTGCTGAAACATATTAGAAATGTGAGGTGGGAGTTTGCAGATATTGTTTGTGATTACTTACTTGGGCAAAGCTCATGCGCTCTCTATCTCAGTCTTCGGTATCATCTGCTGCATCCAGACTACCTATATTTCCGTATCAGAGAATTGCAAAAGAACTTTAAGCTTCGTGTTGTCCTTTGCCATGTTGATGTGGAAGATGTAATCAAGCCTTTACTTGAAGTTACTAAAACTGCTCTGCTTCATGAATGCGCATTATTATGCGGTTGGAGCTTGGAGGAATGTGGTCGATACTTGGAGACTATAAAAGTCTATGAAAACAAGCCTGCAGACATTATTCAAGGTCAAATGGATACAGACTATTTATCGCGGCTAAATCACGCATTAACGACAGTTCGACATGTTAACAAGACTGATGTTGTCACCCTTGGTACTACGTTCGGGTCTCTTTCTCATATCATGGATGTTTCCATGGAAGATCTAGCTCGTTGCCCTGGGATAGGAGAGCGTAAGGTGAAACGTTTGTATGATACATTTCATGAACCATTTAAGCGTGTGGTTGCCAGTCGCCCTGCTGTTCCAGAAACCTCTGTCCCGAGCAATGCTGAACCTCGTTCAGTGGATGAAGATAAAGCAGCAGAGGAAACAGAAGATGAAAGCAAACGTGGAAAGAAAGAACGAAAATTGAGTGTTAAGTCAGCCTTGTCTGCTGCCTTTTCCAAATATGCTGATAAAGTTAATAGAAAGGGCATCAACTCGCAAGGAGAGAAACAAGGAGAAAAAAGTGCTGCCATGGAAGCTGAAACTGAAAACGAATGA

Protein Analysis

398

Amino Acids

44.21

Weight (kDa)

6.85

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad10 PF03834 116 - 228 3.7e-44 Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc16I TGCGCA 1 cut(s) 628
Acc36I ACCTGC 1 cut(s) 307
AccII CGCG 1 cut(s) 745
AciI CCGC 7 cut(s) 197, 213, 216, 227, 230, 639, 745
AclI AACGTT 1 cut(s) 895
AcoI YGGCCR 1 cut(s) 265
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 2 cut(s) 93, 808
AfiI CCNNNNNNNGG 2 cut(s) 255, 875
AflIII ACRYGT 1 cut(s) 775
AgsI TTSAA 3 cut(s) 86, 596, 716
AjnI CCWGG 1 cut(s) 868
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 7 cut(s) 102, 150, 450, 541, 648, 860, 1175
AluI AGCT 7 cut(s) 102, 150, 450, 541, 648, 860, 1175
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 668, 825
Ama87I CYCGRG 2 cut(s) 95, 970
AoxI GGCC 2 cut(s) 234, 265
ApeKI GCWGC 4 cut(s) 487, 1010, 1085, 1163
AspLEI GCGC 2 cut(s) 458, 629
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 3 cut(s) 288, 790, 901
AvaI CYCGRG 2 cut(s) 95, 970
AvaII GGWCC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 267
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 4 cut(s) 12, 18, 276, 464
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 4 cut(s) 474, 1022, 1072, 1150
BciT130I CCWGG 1 cut(s) 870
BciVI GTATCC 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 668, 825
BfaI CTAG 1 cut(s) 857
BfmI CTRYAG 1 cut(s) 702
BfuAI ACCTGC 1 cut(s) 307
BfuI GTATCC 1 cut(s) 721
BglII AGATCT 1 cut(s) 853
BisI GCNGC 8 cut(s) 197, 216, 230, 488, 746, 1011, 1086, 1164
BlsI GCNGC 8 cut(s) 198, 217, 231, 489, 747, 1012, 1087, 1165
BmcAI AGTACT 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 870
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 2 cut(s) 95, 970
BmgT120I GGNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 870
BmsI GCATC 3 cut(s) 323, 499, 1134
BpiI GAAGAC 4 cut(s) 12, 18, 276, 464
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpuEI CTTGAG 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 825
BsaJI CCNNGG 5 cut(s) 802, 846, 868, 869, 1167
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 875
Bse1I ACTGG 2 cut(s) 268, 939
Bse3DI GCAATG 3 cut(s) 346, 377, 982
BseBI CCWGG 1 cut(s) 870
BseDI CCNNGG 5 cut(s) 802, 846, 868, 869, 1167
BseGI GGATG 3 cut(s) 490, 844, 1003
BseLI CCNNNNNNNGG 2 cut(s) 255, 875
BseMI GCAATG 3 cut(s) 346, 377, 982
BseMII CTCAG 3 cut(s) 174, 252, 481
BseNI ACTGG 2 cut(s) 268, 939
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 4 cut(s) 474, 1022, 1072, 1150
Bsh1236I CGCG 1 cut(s) 745
BshFI GGCC 2 cut(s) 236, 267
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 2 cut(s) 95, 970
BslFI GGGAC 1 cut(s) 953
BslI CCNNNNNNNGG 2 cut(s) 255, 875
BsmAI GTCTC 2 cut(s) 668, 825
BsmFI GGGAC 1 cut(s) 953
BsmI GAATGC 3 cut(s) 167, 310, 629
BsnI GGCC 2 cut(s) 236, 267
Bso31I GGTCTC 1 cut(s) 825
BsoBI CYCGRG 2 cut(s) 95, 970
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 853
Bsp19I CCATGG 2 cut(s) 846, 1167
BspACI CCGC 7 cut(s) 197, 213, 216, 227, 230, 639, 745
BspANI GGCC 2 cut(s) 236, 267
BspCNI CTCAG 3 cut(s) 175, 251, 480
BspFNI CGCG 1 cut(s) 745
BspHI TCATGA 2 cut(s) 619, 913
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 825
BsrDI GCAATG 3 cut(s) 346, 377, 982
BsrI ACTGG 2 cut(s) 268, 939
BssECI CCNNGG 5 cut(s) 802, 846, 868, 869, 1167
BssMI GATC 1 cut(s) 853
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 3 cut(s) 802, 846, 1167
Bst2UI CCWGG 1 cut(s) 870
Bst4CI ACNGT 3 cut(s) 64, 78, 769
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 243
BstC8I GCNNGC 3 cut(s) 104, 234, 702
BstDEI CTNAG 3 cut(s) 183, 238, 467
BstDSI CCRYGG 2 cut(s) 846, 1167
BstENI CCTNNNNNAGG 1 cut(s) 873
BstF5I GGATG 3 cut(s) 490, 844, 1003
BstFNI CGCG 1 cut(s) 745
BstHHI GCGC 2 cut(s) 458, 629
BstKTI GATC 1 cut(s) 856
BstMAI GTCTC 2 cut(s) 668, 825
BstMBI GATC 1 cut(s) 853
BstMWI GCNNNNNNNGC 4 cut(s) 242, 645, 1082, 1172
BstNI CCWGG 1 cut(s) 870
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 1 cut(s) 868
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 4 cut(s) 474, 1022, 1072, 1150
BstV2I GAAGAC 4 cut(s) 12, 18, 276, 464
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
BsuI GTATCC 1 cut(s) 721
BsuRI GGCC 2 cut(s) 236, 267
BtgI CCRYGG 2 cut(s) 846, 1167
BtsCI GGATG 3 cut(s) 490, 844, 1003
BtsIMutI CAGTG 2 cut(s) 69, 999
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 104, 234, 702
CciI TCATGA 2 cut(s) 619, 913
CfoI GCGC 2 cut(s) 458, 629
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 2 cut(s) 251, 323
Csp6I GTAC 2 cut(s) 92, 807
CviAII CATG 8 cut(s) 453, 560, 620, 776, 835, 847, 914, 1168
CviQI GTAC 2 cut(s) 92, 807
DdeI CTNAG 3 cut(s) 183, 238, 467
DpnI GATC 1 cut(s) 855
DpnII GATC 1 cut(s) 853
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 102
Eco130I CCWWGG 3 cut(s) 802, 846, 1167
Eco147I AGGCCT 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 825
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 102
Eco88I CYCGRG 2 cut(s) 95, 970
EcoICRI GAGCTC 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 873
EcoRII CCWGG 1 cut(s) 868
EcoT14I CCWWGG 3 cut(s) 802, 846, 1167
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 3 cut(s) 802, 846, 1167
FaeI CATG 8 cut(s) 456, 563, 623, 779, 838, 850, 917, 1171
FalI AAGNNNNNCTT 2 cut(s) 1061, 1093
FaqI GGGAC 1 cut(s) 953
FatI CATG 8 cut(s) 452, 559, 619, 775, 834, 846, 913, 1167
Fnu4HI GCNGC 8 cut(s) 197, 216, 230, 488, 746, 1011, 1086, 1164
FokI GGATG 3 cut(s) 477, 851, 1010
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 8 cut(s) 197, 216, 230, 488, 746, 1011, 1086, 1164
FspAI RTGCGCAY 1 cut(s) 628
FspBI CTAG 1 cut(s) 857
FspI TGCGCA 1 cut(s) 628
GlaI GCGC 2 cut(s) 457, 628
GluI GCNGC 8 cut(s) 197, 216, 230, 488, 746, 1011, 1086, 1164
HaeIII GGCC 2 cut(s) 236, 267
HgaI GACGC 2 cut(s) 251, 323
HhaI GCGC 2 cut(s) 458, 629
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 8 cut(s) 456, 563, 623, 779, 838, 850, 917, 1171
Hin6I GCGC 2 cut(s) 456, 627
HinP1I GCGC 2 cut(s) 456, 627
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 1 cut(s) 32
HpaI GTTAAC 1 cut(s) 781
HphI GGTGA 3 cut(s) 288, 790, 901
Hpy166II GTNNAC 1 cut(s) 781
Hpy188I TCNGA 5 cut(s) 37, 184, 241, 274, 518
Hpy188III TCNNGA 7 cut(s) 86, 97, 494, 620, 914, 956, 970
Hpy8I GTNNAC 1 cut(s) 781
Hpy99I CGWCG 1 cut(s) 339
HpyAV CCTTC 3 cut(s) 135, 150, 361
HpyCH4III ACNGT 3 cut(s) 64, 78, 769
HpyCH4IV ACGT 3 cut(s) 812, 895, 1039
HpyCH4V TGCA 8 cut(s) 167, 308, 314, 344, 416, 490, 526, 704
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 645, 1082, 1172
HpyF3I CTNAG 3 cut(s) 183, 238, 467
HpySE526I ACGT 3 cut(s) 812, 895, 1039
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 8 cut(s) 456, 563, 623, 779, 838, 850, 917, 1171
HspAI GCGC 2 cut(s) 456, 627
KspAI GTTAAC 1 cut(s) 781
Kzo9I GATC 1 cut(s) 853
LmnI GCTCC 1 cut(s) 645
Lsp1109I GCAGC 4 cut(s) 474, 1022, 1072, 1150
LweI GCATC 3 cut(s) 323, 499, 1134
MaeI CTAG 1 cut(s) 857
MaeII ACGT 3 cut(s) 812, 895, 1039
MaeIII GTNAC 2 cut(s) 598, 796
MalI GATC 1 cut(s) 855
MboI GATC 1 cut(s) 853
MflI RGATCY 1 cut(s) 853
MhlI GDGCHC 1 cut(s) 104
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 4 cut(s) 250, 345, 521, 1058
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 2 cut(s) 15, 623
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 6 cut(s) 537, 761, 780, 924, 1068, 1113
MslI CAYNNNNRTG 2 cut(s) 564, 634
Msp20I TGGCCA 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 870
Mva1269I GAATGC 3 cut(s) 167, 310, 629
MvaI CCWGG 1 cut(s) 870
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 4 cut(s) 242, 645, 1082, 1172
NcoI CCATGG 2 cut(s) 846, 1167
NdeII GATC 1 cut(s) 853
NlaIII CATG 8 cut(s) 456, 563, 623, 779, 838, 850, 917, 1171
NmuCI GTSAC 1 cut(s) 796
NsbI TGCGCA 1 cut(s) 628
NspI RCATGY 1 cut(s) 779
PaeR7I CTCGAG 1 cut(s) 95
PagI TCATGA 2 cut(s) 619, 913
PaqCI CACCTGC 1 cut(s) 307
PasI CCCWGGG 1 cut(s) 869
PceI AGGCCT 1 cut(s) 236
PciI ACATGT 1 cut(s) 775
PctI GAATGC 3 cut(s) 167, 310, 629
PkrI GCNGC 8 cut(s) 198, 217, 231, 489, 747, 1012, 1087, 1165
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PscI ACATGT 1 cut(s) 775
Psp124BI GAGCTC 1 cut(s) 104
Psp1406I AACGTT 1 cut(s) 895
Psp6I CCWGG 1 cut(s) 868
PspGI CCWGG 1 cut(s) 868
PspPI GGNCC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 1 cut(s) 853
RsaI GTAC 2 cut(s) 93, 808
RsaNI GTAC 2 cut(s) 92, 807
RseI CAYNNNNRTG 2 cut(s) 564, 634
SacI GAGCTC 1 cut(s) 104
SaqAI TTAA 6 cut(s) 537, 761, 780, 924, 1068, 1113
SatI GCNGC 8 cut(s) 197, 216, 230, 488, 746, 1011, 1086, 1164
Sau3AI GATC 1 cut(s) 853
Sau96I GGNCC 1 cut(s) 37
ScaI AGTACT 1 cut(s) 93
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 870
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 3 cut(s) 323, 499, 1134
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 95
SmiMI CAYNNNNRTG 2 cut(s) 564, 634
SmlI CTYRAG 2 cut(s) 95, 156
SmoI CTYRAG 2 cut(s) 95, 156
Sse9I AATT 4 cut(s) 250, 345, 521, 1058
SseBI AGGCCT 1 cut(s) 236
SsiI CCGC 7 cut(s) 197, 213, 216, 227, 230, 639, 745
SspMI CTAG 1 cut(s) 857
SstI GAGCTC 1 cut(s) 104
StuI AGGCCT 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 868
StyI CCWWGG 3 cut(s) 802, 846, 1167
TaaI ACNGT 3 cut(s) 64, 78, 769
TaiI ACGT 3 cut(s) 815, 898, 1042
TaqI TCGA 4 cut(s) 96, 254, 664, 772
TasI AATT 4 cut(s) 250, 345, 521, 1058
TatI WGTACW 1 cut(s) 91
TauI GCSGC 4 cut(s) 199, 218, 232, 748
Tru1I TTAA 6 cut(s) 537, 761, 780, 924, 1068, 1113
Tru9I TTAA 6 cut(s) 537, 761, 780, 924, 1068, 1113
TscAI CASTG 2 cut(s) 69, 999
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 4 cut(s) 487, 1010, 1085, 1163
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 9 cut(s) 276, 312, 608, 636, 705, 902, 930, 1014, 1044
TspGWI ACGGA 3 cut(s) 30, 270, 500
TspRI CASTG 2 cut(s) 69, 999
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 873
XceI RCATGY 1 cut(s) 779
XhoI CTCGAG 1 cut(s) 95
XspI CTAG 1 cut(s) 857
ZrmI AGTACT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.