pycom04g18460

DNA excision repair protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
20464961 .. 20469299
4339 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g18460.6

Sequence Viewer

Length: 1320 bp
ATGGCATTCCCCTTGACCCCCGATGCTCTCTTATCTATTAGCCTAAGGCCCAAGCCTGAAACCCAACACCACCTACGCAAAACCATCAGCGTACTCGAAGAAAGAGCAGAAGAAACAGAGGGAGACATGGAAGACGAAGACGGAGGGCAAAATACAGAGTCAGACCTGAACAAAAACAAGAAGAAAACAGTGATAAAAATACCATCTTTTCAAGAAGTACTCGAGAGCTCGCAGTCTAAATCCACCCCGCCTTCTCTCTTCACTCCTTCACATAGTTTTGCTCAAGCATTTGCATTCGTCAAGTCCTCTGAGTTCTACTCGCCGCCTCCTGCCTCCACCGCCGCCTCACAACCGCCGCAGGCCTCAGACGCCACCAATTCGAGGCAAACTGGCCAATCTGATGTTCCGTCTTCATCATCTGCACCTGCGAATGCAGTTGCATCATCTTCATCTGTTCAGCGTCGCAATGCAATTCTTGTGAGCCACAGACAGAAGGGAAACCCATTGCTGAAACATATTAGAAATGTGAGGTGGGAGTTTGCAGATATTGGTTGTGACTACTTACTTGGGCAAAGCTCATGCGCTCTCTATCTCAGTCTTCGGTATCATCTGCTGCATCCAGACTACCTATATTTCCGTATCAGAGAATTGCAAAAGAACTTTAAGCTTCGTGTTGTCCTTTGCCATGTTGATGTGGAAGATGTAATCAAGCCTTTACTTGAAGTTACTAAAACTGCTCTGCTTCATGAATGCACATTATTATGCGGTTGGAGCTTGGAGGAATGTGGTCGATACTTGGAGACTATAAAAGTTTATGAAAACAAGCCTGCAGACATTATTCAAGGTCAAATGGATACAGACTATTTATCGCGGCTAAATCACGCGTTAACAACAGTTCGACATGTTAACAAGACTGATGTTGTCACCCTTGGTACTACGTTCGGGTCTCTTTCTCATATCATGGATGTTTCCATGGAAGATCTAGCTCGTTGCCCTGGGATAGGAGAGCGTAAGGTGAAACGTTTGTATGATACATTTCATGAACCATTTAAGCGTGTGGTTGCCAGTCGCCCTGCTGTTCCAGAAACCTCTGTCCCGAGCAATGCTGAACCTGGTTCAGTGGATGAAGATAAAGCAGCAGAGGAAACAGAAGATGAAAGCAAACGTGGAAAGAAGGAACGAAAATTGAGTGTTAAGTCGGCCTTGTCTGCTGCCTTTTCCAAATATGCTGATAAAGTTAATAGAAAGAGCATCAACTCACAAGGAGAGAAACAAGGAGAAACAAGTACTGCCATGGAAGCTGAATCTGAAAACGAATGA

Protein Analysis

440

Amino Acids

48.8

Weight (kDa)

6.16

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 433
Acc36I ACCTGC 1 cut(s) 433
AccII CGCG 2 cut(s) 871, 884
AciI CCGC 8 cut(s) 248, 323, 339, 342, 353, 356, 765, 871
AclI AACGTT 1 cut(s) 1021
AcoI YGGCCR 1 cut(s) 391
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 4 cut(s) 93, 219, 934, 1288
AfiI CCNNNNNNNGG 2 cut(s) 381, 1001
AflIII ACRYGT 2 cut(s) 882, 901
AgsI TTSAA 3 cut(s) 212, 722, 842
AjnI CCWGG 2 cut(s) 994, 1111
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 6 cut(s) 228, 576, 667, 774, 986, 1301
AluI AGCT 6 cut(s) 228, 576, 667, 774, 986, 1301
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 3 cut(s) 117, 794, 951
Ama87I CYCGRG 2 cut(s) 221, 1096
AoxI GGCC 4 cut(s) 47, 360, 391, 1200
ApeKI GCWGC 3 cut(s) 613, 1136, 1211
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 916, 1027
AvaI CYCGRG 2 cut(s) 221, 1096
AxyI CCTNAGG 1 cut(s) 44
BalI TGGCCA 1 cut(s) 393
BanII GRGCYC 1 cut(s) 230
BbsI GAAGAC 4 cut(s) 138, 144, 402, 590
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 3 cut(s) 600, 1148, 1198
BccI CCATC 2 cut(s) 92, 211
BciT130I CCWGG 2 cut(s) 996, 1113
BciVI GTATCC 1 cut(s) 847
BcoDI GTCTC 3 cut(s) 117, 794, 951
BfaI CTAG 1 cut(s) 983
BfmI CTRYAG 1 cut(s) 828
BfuAI ACCTGC 1 cut(s) 433
BfuI GTATCC 1 cut(s) 847
BglII AGATCT 1 cut(s) 979
BisI GCNGC 7 cut(s) 323, 342, 356, 614, 872, 1137, 1212
BlsI GCNGC 7 cut(s) 324, 343, 357, 615, 873, 1138, 1213
BmcAI AGTACT 2 cut(s) 219, 1288
Bme1390I CCNGG 2 cut(s) 996, 1113
BmeT110I CYCGRG 2 cut(s) 221, 1096
BmgT120I GGNCC 1 cut(s) 48
BmrFI CCNGG 2 cut(s) 996, 1113
BmsI GCATC 4 cut(s) 13, 449, 625, 1260
BpiI GAAGAC 4 cut(s) 138, 144, 402, 590
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpuEI CTTGAG 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 951
BsaJI CCNNGG 5 cut(s) 928, 972, 994, 995, 1293
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 1001
Bse1I ACTGG 2 cut(s) 394, 1065
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 3 cut(s) 472, 503, 1108
BseBI CCWGG 2 cut(s) 996, 1113
BseDI CCNNGG 5 cut(s) 928, 972, 994, 995, 1293
BseGI GGATG 3 cut(s) 616, 970, 1129
BseLI CCNNNNNNNGG 2 cut(s) 381, 1001
BseMI GCAATG 3 cut(s) 472, 503, 1108
BseMII CTCAG 3 cut(s) 300, 378, 607
BseNI ACTGG 2 cut(s) 394, 1065
BseXI GCAGC 3 cut(s) 600, 1148, 1198
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 2 cut(s) 871, 884
BshFI GGCC 4 cut(s) 49, 362, 393, 1202
BsiHKAI GWGCWC 1 cut(s) 230
BsiHKCI CYCGRG 2 cut(s) 221, 1096
BslFI GGGAC 1 cut(s) 1079
BslI CCNNNNNNNGG 2 cut(s) 381, 1001
BsmAI GTCTC 3 cut(s) 117, 794, 951
BsmFI GGGAC 1 cut(s) 1079
BsmI GAATGC 4 cut(s) 5, 293, 436, 755
BsnI GGCC 4 cut(s) 49, 362, 393, 1202
Bso31I GGTCTC 1 cut(s) 951
BsoBI CYCGRG 2 cut(s) 221, 1096
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 979
Bsp19I CCATGG 2 cut(s) 972, 1293
BspACI CCGC 8 cut(s) 248, 323, 339, 342, 353, 356, 765, 871
BspANI GGCC 4 cut(s) 49, 362, 393, 1202
BspCNI CTCAG 3 cut(s) 301, 377, 606
BspFNI CGCG 2 cut(s) 871, 884
BspHI TCATGA 2 cut(s) 745, 1039
BspMAI CTGCAG 1 cut(s) 832
BspMI ACCTGC 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 951
BsrDI GCAATG 3 cut(s) 472, 503, 1108
BsrI ACTGG 2 cut(s) 394, 1065
BssECI CCNNGG 5 cut(s) 928, 972, 994, 995, 1293
BssMI GATC 1 cut(s) 979
BssNI GRCGYC 1 cut(s) 369
BssT1I CCWWGG 3 cut(s) 928, 972, 1293
Bst2UI CCWGG 2 cut(s) 996, 1113
Bst4CI ACNGT 2 cut(s) 190, 895
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 369
BstC8I GCNNGC 3 cut(s) 230, 360, 828
BstDEI CTNAG 4 cut(s) 44, 309, 364, 593
BstDSI CCRYGG 2 cut(s) 972, 1293
BstENI CCTNNNNNAGG 1 cut(s) 999
BstF5I GGATG 3 cut(s) 616, 970, 1129
BstFNI CGCG 2 cut(s) 871, 884
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 1 cut(s) 982
BstMAI GTCTC 3 cut(s) 117, 794, 951
BstMBI GATC 1 cut(s) 979
BstMWI GCNNNNNNNGC 5 cut(s) 338, 368, 771, 1208, 1298
BstNI CCWGG 2 cut(s) 996, 1113
BstNSI RCATGY 1 cut(s) 905
BstSCI CCNGG 2 cut(s) 994, 1111
BstSFI CTRYAG 1 cut(s) 828
BstUI CGCG 2 cut(s) 871, 884
BstV1I GCAGC 3 cut(s) 600, 1148, 1198
BstV2I GAAGAC 4 cut(s) 138, 144, 402, 590
BstX2I RGATCY 1 cut(s) 979
BstYI RGATCY 1 cut(s) 979
Bsu36I CCTNAGG 1 cut(s) 44
BsuI GTATCC 1 cut(s) 847
BsuRI GGCC 4 cut(s) 49, 362, 393, 1202
BtgI CCRYGG 2 cut(s) 972, 1293
BtsCI GGATG 3 cut(s) 616, 970, 1129
BtsIMutI CAGTG 2 cut(s) 195, 1125
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 3 cut(s) 230, 360, 828
CciI TCATGA 2 cut(s) 745, 1039
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 1 cut(s) 48
CseI GACGC 2 cut(s) 377, 449
CsiI ACCWGGT 1 cut(s) 1111
Csp6I GTAC 4 cut(s) 92, 218, 933, 1287
CviAII CATG 9 cut(s) 127, 579, 686, 746, 902, 961, 973, 1040, 1294
CviQI GTAC 4 cut(s) 92, 218, 933, 1287
DdeI CTNAG 4 cut(s) 44, 309, 364, 593
DpnI GATC 1 cut(s) 981
DpnII GATC 1 cut(s) 979
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 228
Eco130I CCWWGG 3 cut(s) 928, 972, 1293
Eco147I AGGCCT 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 951
Eco53kI GAGCTC 1 cut(s) 228
Eco81I CCTNAGG 1 cut(s) 44
Eco88I CYCGRG 2 cut(s) 221, 1096
EcoICRI GAGCTC 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 999
EcoRII CCWGG 2 cut(s) 994, 1111
EcoT14I CCWWGG 3 cut(s) 928, 972, 1293
EcoT38I GRGCYC 1 cut(s) 230
ErhI CCWWGG 3 cut(s) 928, 972, 1293
FaeI CATG 9 cut(s) 130, 582, 689, 749, 905, 964, 976, 1043, 1297
FalI AAGNNNNNCTT 2 cut(s) 1187, 1219
FaqI GGGAC 1 cut(s) 1079
FatI CATG 9 cut(s) 126, 578, 685, 745, 901, 960, 972, 1039, 1293
FauI CCCGC 1 cut(s) 255
Fnu4HI GCNGC 7 cut(s) 323, 342, 356, 614, 872, 1137, 1212
FokI GGATG 3 cut(s) 603, 977, 1136
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 7 cut(s) 323, 342, 356, 614, 872, 1137, 1212
FspBI CTAG 1 cut(s) 983
GlaI GCGC 1 cut(s) 583
GluI GCNGC 7 cut(s) 323, 342, 356, 614, 872, 1137, 1212
HaeIII GGCC 4 cut(s) 49, 362, 393, 1202
HgaI GACGC 2 cut(s) 377, 449
HhaI GCGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 9 cut(s) 130, 582, 689, 749, 905, 964, 976, 1043, 1297
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 2 cut(s) 888, 907
HindII GTYRAC 2 cut(s) 888, 907
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 2 cut(s) 158, 1304
HpaI GTTAAC 2 cut(s) 888, 907
HphI GGTGA 2 cut(s) 916, 1027
Hpy166II GTNNAC 2 cut(s) 888, 907
Hpy188I TCNGA 6 cut(s) 163, 310, 367, 400, 644, 1309
Hpy188III TCNNGA 7 cut(s) 212, 223, 620, 746, 1040, 1082, 1096
Hpy8I GTNNAC 2 cut(s) 888, 907
Hpy99I CGWCG 1 cut(s) 465
HpyAV CCTTC 4 cut(s) 261, 276, 487, 1168
HpyCH4III ACNGT 2 cut(s) 190, 895
HpyCH4IV ACGT 3 cut(s) 938, 1021, 1165
HpyF10VI GCNNNNNNNGC 5 cut(s) 338, 368, 771, 1208, 1298
HpyF3I CTNAG 4 cut(s) 44, 309, 364, 593
HpySE526I ACGT 3 cut(s) 938, 1021, 1165
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 9 cut(s) 130, 582, 689, 749, 905, 964, 976, 1043, 1297
HspAI GCGC 1 cut(s) 582
KspAI GTTAAC 2 cut(s) 888, 907
Kzo9I GATC 1 cut(s) 979
LmnI GCTCC 1 cut(s) 771
Lsp1109I GCAGC 3 cut(s) 600, 1148, 1198
LweI GCATC 4 cut(s) 13, 449, 625, 1260
MabI ACCWGGT 1 cut(s) 1111
MaeI CTAG 1 cut(s) 983
MaeII ACGT 3 cut(s) 938, 1021, 1165
MaeIII GTNAC 3 cut(s) 554, 724, 922
MalI GATC 1 cut(s) 981
MboI GATC 1 cut(s) 979
MflI RGATCY 1 cut(s) 979
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 4 cut(s) 376, 471, 647, 1184
MluI ACGCGT 1 cut(s) 882
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 749
Mox20I TGGCCA 1 cut(s) 393
MscI TGGCCA 1 cut(s) 393
MseI TTAA 6 cut(s) 663, 887, 906, 1050, 1194, 1239
MslI CAYNNNNRTG 2 cut(s) 690, 760
Msp20I TGGCCA 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 996, 1113
Mva1269I GAATGC 4 cut(s) 5, 293, 436, 755
MvaI CCWGG 2 cut(s) 996, 1113
MvnI CGCG 2 cut(s) 871, 884
MwoI GCNNNNNNNGC 5 cut(s) 338, 368, 771, 1208, 1298
NcoI CCATGG 2 cut(s) 972, 1293
NdeII GATC 1 cut(s) 979
NlaIII CATG 9 cut(s) 130, 582, 689, 749, 905, 964, 976, 1043, 1297
NmuCI GTSAC 2 cut(s) 554, 922
NspI RCATGY 1 cut(s) 905
PaeR7I CTCGAG 1 cut(s) 221
PagI TCATGA 2 cut(s) 745, 1039
PaqCI CACCTGC 1 cut(s) 433
PasI CCCWGGG 1 cut(s) 995
PceI AGGCCT 1 cut(s) 362
PciI ACATGT 1 cut(s) 901
PctI GAATGC 4 cut(s) 5, 293, 436, 755
PfeI GAWTC 1 cut(s) 1304
PkrI GCNGC 7 cut(s) 324, 343, 357, 615, 873, 1138, 1213
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PscI ACATGT 1 cut(s) 901
Psp124BI GAGCTC 1 cut(s) 230
Psp1406I AACGTT 1 cut(s) 1021
Psp6I CCWGG 2 cut(s) 994, 1111
PspGI CCWGG 2 cut(s) 994, 1111
PspPI GGNCC 1 cut(s) 48
PstI CTGCAG 1 cut(s) 832
PsuI RGATCY 1 cut(s) 979
RsaI GTAC 4 cut(s) 93, 219, 934, 1288
RsaNI GTAC 4 cut(s) 92, 218, 933, 1287
RseI CAYNNNNRTG 2 cut(s) 690, 760
SacI GAGCTC 1 cut(s) 230
SaqAI TTAA 6 cut(s) 663, 887, 906, 1050, 1194, 1239
SatI GCNGC 7 cut(s) 323, 342, 356, 614, 872, 1137, 1212
Sau3AI GATC 1 cut(s) 979
Sau96I GGNCC 1 cut(s) 48
ScaI AGTACT 2 cut(s) 219, 1288
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 996, 1113
SduI GDGCHC 1 cut(s) 230
SexAI ACCWGGT 1 cut(s) 1111
SfaNI GCATC 4 cut(s) 13, 449, 625, 1260
SfcI CTRYAG 1 cut(s) 828
Sfr274I CTCGAG 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 690, 760
SmlI CTYRAG 2 cut(s) 221, 282
SmoI CTYRAG 2 cut(s) 221, 282
Sse9I AATT 4 cut(s) 376, 471, 647, 1184
SseBI AGGCCT 1 cut(s) 362
SsiI CCGC 8 cut(s) 248, 323, 339, 342, 353, 356, 765, 871
SspMI CTAG 1 cut(s) 983
SstI GAGCTC 1 cut(s) 230
StuI AGGCCT 1 cut(s) 362
StyD4I CCNGG 2 cut(s) 994, 1111
StyI CCWWGG 3 cut(s) 928, 972, 1293
TaaI ACNGT 2 cut(s) 190, 895
TaiI ACGT 3 cut(s) 941, 1024, 1168
TaqI TCGA 5 cut(s) 96, 222, 380, 790, 898
TasI AATT 4 cut(s) 376, 471, 647, 1184
TatI WGTACW 2 cut(s) 217, 1286
TauI GCSGC 4 cut(s) 325, 344, 358, 874
TfiI GAWTC 1 cut(s) 1304
Tru1I TTAA 6 cut(s) 663, 887, 906, 1050, 1194, 1239
Tru9I TTAA 6 cut(s) 663, 887, 906, 1050, 1194, 1239
TscAI CASTG 2 cut(s) 195, 1125
TseFI GTSAC 2 cut(s) 554, 922
TseI GCWGC 3 cut(s) 613, 1136, 1211
Tsp45I GTSAC 2 cut(s) 554, 922
TspDTI ATGAA 9 cut(s) 402, 438, 734, 762, 831, 1028, 1056, 1140, 1170
TspGWI ACGGA 3 cut(s) 156, 396, 626
TspRI CASTG 2 cut(s) 195, 1125
XagI CCTNNNNNAGG 1 cut(s) 999
XceI RCATGY 1 cut(s) 905
XhoI CTCGAG 1 cut(s) 221
XspI CTAG 1 cut(s) 983
ZrmI AGTACT 2 cut(s) 219, 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.