Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000165

Orthogroup ID

OG0006103

Physical Location & Seq

Genomic Coordinates Forward (+)

128215 .. 131734

Gene Structure 3520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_165G00437010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAAGACGAAGACAGAGTGCAAAATACAGAGTCATCCCAAAAGAACAAGACGGTGATAAAGATACCATCTTTTCAAGAAGTTATAGAGAGCTCGCAGTCAAAATCAACCCCACCTTCTCTGTTTGCTCCCTCCAAAACCTTTTCTCAAGCTTTTGCCTTTGTCAAATCCTCTGAGTTTTACTCCCCCCAAAACCCCCAGAAACCTCTAACTCAAGGTACCCTTTTCCCAATTTCAATCCTTTCTTTGTTTCTGGAAACTGGGCAATCTGGTGTTCCACCATCATCTGCTCCTACCAATGCTGTTGCATCTTCGTCATCTTCGCAGCGTCGCAATGCGATTCTTGTGAGCAACAGACAGAAGGGAAACCCCTTGCTGAAACATATCAGAAATGTGAGGTGGGAATTTGCAGATATTATTTGTGACTACTTACTCGGACAAAGCTCATGTGCACTCTATCTAAGTCTTCGTTATCATCTGCTGCATCCAGACTATTTATATTACCGCATAAGAGAATTGCAAAAGAACTACAAGCTTCGGGTTGTACTTTGCCATGTTGATGTGGAGGATGTAGTTAAGCCGTTACTTGAAGTTACTAAAACTGCCATGCTTCATGAGTGCACCCTATTATGTGCTTGGAGCTTGGAGGAATGTGGACGCTACTTGGAGACGATAAAAGTCTATGAAAACAAGCCTGCTGACATTATTCAAGGTCAAATGGATACAGACTATTTATCACGGCTAAATCATGCATTAACGACTGTTCGACATGTTAACAAGACAGATGTTGTCACCCTTGGAACTACTTTTGGGTCTCTTGCTCATGTCATGGATGTTTCGATGGAAGATCTAGCTCGTTGCCCTGGCATTGGAGAGCGCAAGATTGTGTTATGGCATATATCCTTGCCGCCCTGCTGTATCAGAACCTTCTCCTCGAACAATGCTGAACCTTGTTCAGTTACCGAAGATAAAGAAATAAAGGATACTGAAGAAGAAAGCAAACGCAGGAAGAAAGAACCAGAACCGACTGTTAAGTCTGCCCTGTCTGCTGCTTTTGCCAAATATGCTGACAGAGTTAAAAAAGAAGTCACCAGAGTTGAAGAATGGAGATACAAGTGTTGCCATGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000710 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006296 GO:0006298 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010212 GO:0010213 GO:0010224 GO:0010332 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048256 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070522 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03420 ko03460 map01524 map03420 map03460

Pfam Domains

Protein Families

HHH_2 HHH_5 Rad10

Protein Analysis

377

Amino Acids

42.69

Weight (kDa)

8.17

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad10	PF03834	114 - 226	1.9e-46	Binding domain of DNA repair protein Ercc1 (rad10/Swi10)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05210 AT3G05210
fragaria_vesca	FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460
malus_domestica	MD04G1208500.v1.1
prunus_persica	Prupe.6G329400_v2.0.a1 Prupe.6G329400_v2.0.a1 Prupe.6G329400_v2.0.a1 Prupe.6G329400_v2.0.a1
pyrus_communis	pycom04g18460
rosa_chinensis	RchiOBHm_Chr3g0454231
rosa_laevigata	RLG00000025474
rosa_multiflora	Rmu_sc0026184.1_g000002 Rmu_sc0038077.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437010 Rroxscaffold_6G00425350
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG056900 Rh3BG058300 Rh3CG057500 Rh3DG058800
rosa_wichuraiana	Rw3G004380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1033
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	2 cut(s)	505, 908
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	1008
AfaI	GTAC	2 cut(s)	220, 546
AfiI	CCNNNNNNNGG	1 cut(s)	869
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	5 cut(s)	77, 237, 590, 710, 1100
AjnI	CCWGG	1 cut(s)	862
AluBI	AGCT	7 cut(s)	93, 152, 444, 535, 642, 854, 1131
AluI	AGCT	7 cut(s)	93, 152, 444, 535, 642, 854, 1131
Alw21I	GWGCWC	3 cut(s)	95, 454, 623
Alw26I	GTCTC	2 cut(s)	662, 819
Alw44I	GTGCAC	2 cut(s)	450, 619
ApaLI	GTGCAC	2 cut(s)	450, 619
ApeKI	GCWGC	3 cut(s)	325, 481, 1049
ApoI	RAATTY	1 cut(s)	404
Asp718I	GGTACC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	879
AsuHPI	GGTGA	3 cut(s)	67, 784, 1081
BaeGI	GKGCMC	2 cut(s)	454, 623
BaeI	ACNNNNGTAYC	1 cut(s)	1102
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	3 cut(s)	12, 18, 458
Bbv12I	GWGCWC	3 cut(s)	95, 454, 623
BbvI	GCAGC	3 cut(s)	337, 468, 1036
BccI	CCATC	3 cut(s)	76, 289, 835
BceAI	ACGGC	2 cut(s)	565, 755
BciT130I	CCWGG	1 cut(s)	864
BciVI	GTATCC	2 cut(s)	715, 976
BcoDI	GTCTC	2 cut(s)	662, 819
BfaI	CTAG	1 cut(s)	851
BfuI	GTATCC	2 cut(s)	715, 976
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	4 cut(s)	326, 482, 908, 1050
BlsI	GCNGC	4 cut(s)	327, 483, 909, 1051
Bme1390I	CCNGG	1 cut(s)	864
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	864
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	317, 493
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	3 cut(s)	12, 18, 458
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpuEI	CTTGAG	2 cut(s)	132, 198
BsaI	GGTCTC	1 cut(s)	819
BsaJI	CCNNGG	3 cut(s)	796, 862, 1123
Bsc4I	CCNNNNNNNGG	1 cut(s)	869
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	864
BseDI	CCNNGG	3 cut(s)	796, 862, 1123
BseGI	GGATG	4 cut(s)	35, 484, 574, 838
BseLI	CCNNNNNNNGG	1 cut(s)	869
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	922
BseSI	GKGCMC	2 cut(s)	454, 623
BseXI	GCAGC	3 cut(s)	337, 468, 1036
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	3 cut(s)	95, 454, 623
BslI	CCNNNNNNNGG	1 cut(s)	869
BsmAI	GTCTC	2 cut(s)	662, 819
BsmBI	CGTCTC	1 cut(s)	662
Bso31I	GGTCTC	1 cut(s)	819
Bsp1286I	GDGCHC	3 cut(s)	95, 454, 623
Bsp143I	GATC	1 cut(s)	847
Bsp19I	CCATGG	1 cut(s)	1123
BspACI	CCGC	2 cut(s)	505, 908
BspCNI	CTCAG	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	819
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	796, 862, 1123
BssMI	GATC	1 cut(s)	847
BssT1I	CCWWGG	2 cut(s)	796, 1123
Bst2UI	CCWGG	1 cut(s)	864
Bst4CI	ACNGT	3 cut(s)	55, 763, 1030
BstC8I	GCNNGC	2 cut(s)	95, 696
BstDEI	CTNAG	2 cut(s)	174, 461
BstDSI	CCRYGG	1 cut(s)	1123
BstF5I	GGATG	4 cut(s)	35, 484, 574, 838
BstHHI	GCGC	1 cut(s)	879
BstKTI	GATC	1 cut(s)	850
BstMAI	GTCTC	2 cut(s)	662, 819
BstMBI	GATC	1 cut(s)	847
BstMWI	GCNNNNNNNGC	4 cut(s)	1046, 1055, 1064, 1128
BstNI	CCWGG	1 cut(s)	864
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	862
BstSLI	GKGCMC	2 cut(s)	454, 623
BstV1I	GCAGC	3 cut(s)	337, 468, 1036
BstV2I	GAAGAC	3 cut(s)	12, 18, 458
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
BsuI	GTATCC	2 cut(s)	715, 976
BtgI	CCRYGG	1 cut(s)	1123
BtsCI	GGATG	4 cut(s)	35, 484, 574, 838
Cac8I	GCNNGC	2 cut(s)	95, 696
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	879
CseI	GACGC	2 cut(s)	317, 666
Csp6I	GTAC	2 cut(s)	219, 545
CviAII	CATG	9 cut(s)	447, 554, 607, 614, 749, 770, 824, 829, 1124
CviQI	GTAC	2 cut(s)	219, 545
DdeI	CTNAG	2 cut(s)	174, 461
DpnI	GATC	1 cut(s)	849
DpnII	GATC	1 cut(s)	847
DrdI	GACNNNNNNGTC	1 cut(s)	1033
DseDI	GACNNNNNNGTC	1 cut(s)	1033
Ecl136II	GAGCTC	1 cut(s)	93
Eco130I	CCWWGG	2 cut(s)	796, 1123
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	819
Eco53kI	GAGCTC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	1008
EcoICRI	GAGCTC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	862
EcoT14I	CCWWGG	2 cut(s)	796, 1123
EcoT22I	ATGCAT	1 cut(s)	754
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	2 cut(s)	796, 1123
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	9 cut(s)	450, 557, 610, 617, 752, 773, 827, 832, 1127
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	9 cut(s)	446, 553, 606, 613, 748, 769, 823, 828, 1123
Fnu4HI	GCNGC	4 cut(s)	326, 482, 908, 1050
FokI	GGATG	4 cut(s)	22, 471, 581, 845
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	4 cut(s)	326, 482, 908, 1050
FspBI	CTAG	1 cut(s)	851
GlaI	GCGC	1 cut(s)	878
GluI	GCNGC	4 cut(s)	326, 482, 908, 1050
HgaI	GACGC	2 cut(s)	317, 666
HhaI	GCGC	1 cut(s)	879
Hin1II	CATG	9 cut(s)	450, 557, 610, 617, 752, 773, 827, 832, 1127
Hin6I	GCGC	1 cut(s)	877
HinP1I	GCGC	1 cut(s)	877
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	2 cut(s)	150, 533
HinfI	GANTC	2 cut(s)	32, 340
HpaI	GTTAAC	1 cut(s)	775
HphI	GGTGA	3 cut(s)	67, 784, 1081
Hpy166II	GTNNAC	4 cut(s)	452, 621, 656, 775
Hpy188I	TCNGA	4 cut(s)	175, 389, 437, 923
Hpy188III	TCNNGA	4 cut(s)	77, 254, 488, 614
Hpy8I	GTNNAC	4 cut(s)	452, 621, 656, 775
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	3 cut(s)	126, 355, 937
HpyCH4III	ACNGT	3 cut(s)	55, 763, 1030
HpyCH4V	TGCA	8 cut(s)	22, 308, 410, 452, 484, 520, 621, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1046, 1055, 1064, 1128
HpyF3I	CTNAG	2 cut(s)	174, 461
Hsp92II	CATG	9 cut(s)	450, 557, 610, 617, 752, 773, 827, 832, 1127
HspAI	GCGC	1 cut(s)	877
KpnI	GGTACC	1 cut(s)	222
KspAI	GTTAAC	1 cut(s)	775
Kzo9I	GATC	1 cut(s)	847
LmnI	GCTCC	3 cut(s)	133, 295, 639
Lsp1109I	GCAGC	3 cut(s)	337, 468, 1036
LweI	GCATC	2 cut(s)	317, 493
MaeI	CTAG	1 cut(s)	851
MaeIII	GTNAC	6 cut(s)	422, 582, 592, 790, 958, 1087
MalI	GATC	1 cut(s)	849
MboI	GATC	1 cut(s)	847
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	3 cut(s)	95, 454, 623
MluCI	AATT	3 cut(s)	231, 404, 515
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	7 cut(s)	142, 181, 216, 390, 559, 640, 943
Mph1103I	ATGCAT	1 cut(s)	754
MseI	TTAA	5 cut(s)	576, 755, 774, 1032, 1077
MslI	CAYNNNNRTG	1 cut(s)	558
MspR9I	CCNGG	1 cut(s)	864
MvaI	CCWGG	1 cut(s)	864
MwoI	GCNNNNNNNGC	4 cut(s)	1046, 1055, 1064, 1128
NcoI	CCATGG	1 cut(s)	1123
NdeII	GATC	1 cut(s)	847
NlaIII	CATG	9 cut(s)	450, 557, 610, 617, 752, 773, 827, 832, 1127
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	3 cut(s)	422, 790, 1087
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	1 cut(s)	773
PagI	TCATGA	1 cut(s)	613
PciI	ACATGT	1 cut(s)	769
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	4 cut(s)	327, 483, 909, 1051
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PscI	ACATGT	1 cut(s)	769
Psp124BI	GAGCTC	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	862
PspGI	CCWGG	1 cut(s)	862
PspN4I	GGNNCC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	847
RsaI	GTAC	2 cut(s)	220, 546
RsaNI	GTAC	2 cut(s)	219, 545
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	95
SaqAI	TTAA	5 cut(s)	576, 755, 774, 1032, 1077
SatI	GCNGC	4 cut(s)	326, 482, 908, 1050
Sau3AI	GATC	1 cut(s)	847
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	864
SduI	GDGCHC	3 cut(s)	95, 454, 623
SfaNI	GCATC	2 cut(s)	317, 493
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	147, 213
SmoI	CTYRAG	2 cut(s)	147, 213
Sse9I	AATT	3 cut(s)	231, 404, 515
SsiI	CCGC	2 cut(s)	505, 908
SspMI	CTAG	1 cut(s)	851
SstI	GAGCTC	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	862
StyI	CCWWGG	2 cut(s)	796, 1123
TaaI	ACNGT	3 cut(s)	55, 763, 1030
TaqI	TCGA	3 cut(s)	766, 839, 935
TasI	AATT	3 cut(s)	231, 404, 515
TatI	WGTACW	1 cut(s)	544
TauI	GCSGC	1 cut(s)	910
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	5 cut(s)	576, 755, 774, 1032, 1077
Tru9I	TTAA	5 cut(s)	576, 755, 774, 1032, 1077
TseFI	GTSAC	3 cut(s)	422, 790, 1087
TseI	GCWGC	3 cut(s)	325, 481, 1049
Tsp45I	GTSAC	3 cut(s)	422, 790, 1087
TspDTI	ATGAA	2 cut(s)	602, 699
VneI	GTGCAC	2 cut(s)	450, 619
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	1 cut(s)	773
XspI	CTAG	1 cut(s)	851
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.