Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006103

Physical Location & Seq

Genomic Coordinates Reverse (-)

28799020 .. 28802585

Gene Structure 3566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G329400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAAGACGAACACAGAGGGCAAAACCCAGAGTCAGACCAAAACAAAAACAAGAAGAAGACAGTGATAAAAATACCATCTTTTCAAGAAGTTCTTGAGAGTGCACAGTCAAAATCAACCCCACTGTCTCTGTTCACTCCTTCACAGAGCTTTTCTCAAGCCTTTGCCTTCGTCAAGTCCTCTGAGTTCTACTCGTCTCCTCCTCCCCCTGCCACCTCCTCGCAACCCCTACAGGCCTCAGACACCGGTAATTCAAGCAAAACTGGTCAATCTGATGTTCCATCATCATCTGCTCCTACGAATGCTGTTGCATCATCATCATCACCTGCTCAGCGTCGCAATGCAATTATTGTGAGCCACAGACAGAAGGGAAATCCCTTGCTCAAACATATTAGAAATGTGAGGTGGGAGTTTGCAGATATTGTTTGTGACTACTTACTTGGACAAAGCTCATGTGCTCTCTATCTAAGTCTTCGGTATCATCTGCTGCATCCAGACTACCTATATTACCGTATAAGAGAATTGCAAAAGAATTTCAAGCTTCGTGTTGTTCTTTGCCATATTGATGTGGAGGATGTAGTTAAGCCTTTACTTGAAGTTACTAAAACTGCTCTGCTTCATGAATGCACCCTATTATGTGGTTGGAGCTTGGAGGAATGTGGTCGCTACTTGGAGACCATAAAAGTTTATGAAAACAAGCCTGCTGACATTATTCAAGGTCAAATGGATACAGACTATTTATCACGGCTAAATCACGCGTTAACGACAGTTCGACATGTTAACAAGACTGATGTTGTCACCCTTGGTACTACGTTTGGGTCTCTTTCTCATATCATGGATGTTTCGATGGAAGATCTAGCTCGTTGCCCTGGGATTGGAGAGCGCAAGGTAAAACGTTTGTATGATACATTTCACGAACCATTTAAGCGTGTGGTTGCCAGCCGCCCTGCTGTTCCAGAAACCTCTGCCCCAAGCAATGCTGAACCTGGTTCAGTGGATGAAGAAGATAAAGAAGCGGAGGAAACAGAAGACGAAAGCAAACGCAGGAAGAAAGAACCAGAATTGACTGTTAAGTCAGCCTTGTCTGTTGCCTTTTCCAAATATGCTGATAAAGTTAATAAAAAGAACAGCAAGACACAAAGAGAGGAAAAAGGAGAAACAAGTGCTGCCATGGAAGCTGAAACTGAAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000710 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006296 GO:0006298 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010212 GO:0010213 GO:0010224 GO:0010332 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048256 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070522 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03420 ko03460 map01524 map03420 map03460

Pfam Domains

Protein Families

HHH_2 HHH_5 Rad10

Protein Analysis

399

Amino Acids

44.61

Weight (kDa)

6.85

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05210 AT3G05210
fragaria_vesca	FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460 FvH4_6g05460
malus_domestica	MD04G1208500.v1.1
prunus_persica	Prupe.6G329400_v2.0.a1 Prupe.6G329400_v2.0.a1 Prupe.6G329400_v2.0.a1 Prupe.6G329400_v2.0.a1
pyrus_communis	pycom04g18460
rosa_chinensis	RchiOBHm_Chr3g0454231
rosa_laevigata	RLG00000025474
rosa_multiflora	Rmu_sc0026184.1_g000002 Rmu_sc0038077.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437010 Rroxscaffold_6G00425350
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG056900 Rh3BG058300 Rh3CG057500 Rh3DG058800
rosa_wichuraiana	Rw3G004380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
AasI	GACNNNNNNGTC	1 cut(s)	1072
Acc36I	ACCTGC	1 cut(s)	334
AccII	CGCG	1 cut(s)	758
AciI	CCGC	2 cut(s)	943, 1016
AclI	AACGTT	1 cut(s)	895
AcsI	RAATTY	1 cut(s)	532
AfaI	GTAC	1 cut(s)	808
AfiI	CCNNNNNNNGG	1 cut(s)	875
AflIII	ACRYGT	2 cut(s)	756, 775
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	5 cut(s)	86, 255, 538, 596, 716
AjnI	CCWGG	2 cut(s)	868, 985
AluBI	AGCT	6 cut(s)	150, 450, 541, 648, 860, 1178
AluI	AGCT	6 cut(s)	150, 450, 541, 648, 860, 1178
Alw21I	GWGCWC	2 cut(s)	106, 460
Alw26I	GTCTC	4 cut(s)	132, 201, 668, 825
Alw44I	GTGCAC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	234
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	487, 1166
ApoI	RAATTY	1 cut(s)	532
AsiGI	ACCGGT	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	885
AsuHPI	GGTGA	2 cut(s)	315, 790
BaeGI	GKGCMC	1 cut(s)	106
BbsI	GAAGAC	4 cut(s)	12, 65, 464, 1035
Bbv12I	GWGCWC	2 cut(s)	106, 460
BbvI	GCAGC	2 cut(s)	474, 1153
BccI	CCATC	3 cut(s)	85, 289, 841
BceAI	ACGGC	1 cut(s)	761
BciT130I	CCWGG	2 cut(s)	870, 987
BciVI	GTATCC	1 cut(s)	721
BcoDI	GTCTC	4 cut(s)	132, 201, 668, 825
BfaI	CTAG	1 cut(s)	857
BfmI	CTRYAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	721
BglII	AGATCT	1 cut(s)	853
BisI	GCNGC	3 cut(s)	488, 943, 1167
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	3 cut(s)	489, 944, 1168
Bme1390I	CCNGG	2 cut(s)	870, 987
BmrFI	CCNGG	2 cut(s)	870, 987
BmsI	GCATC	2 cut(s)	320, 499
BpiI	GAAGAC	4 cut(s)	12, 65, 464, 1035
BplI	GAGNNNNNCTC	4 cut(s)	139, 171, 176, 208
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	2 cut(s)	116, 141
BsaI	GGTCTC	2 cut(s)	668, 825
BsaJI	CCNNGG	4 cut(s)	802, 868, 869, 1170
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	875
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	346, 982
BseBI	CCWGG	2 cut(s)	870, 987
BseDI	CCNNGG	4 cut(s)	802, 868, 869, 1170
BseGI	GGATG	4 cut(s)	490, 580, 844, 1003
BseLI	CCNNNNNNNGG	1 cut(s)	875
BseMI	GCAATG	2 cut(s)	346, 982
BseMII	CTCAG	3 cut(s)	174, 252, 344
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	3 cut(s)	189, 192, 208
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	474, 1153
Bsh1236I	CGCG	1 cut(s)	758
BshFI	GGCC	1 cut(s)	236
BshTI	ACCGGT	1 cut(s)	245
BsiHKAI	GWGCWC	2 cut(s)	106, 460
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	875
BsmAI	GTCTC	4 cut(s)	132, 201, 668, 825
BsmBI	CGTCTC	1 cut(s)	201
BsmI	GAATGC	2 cut(s)	307, 629
BsnI	GGCC	1 cut(s)	236
Bso31I	GGTCTC	2 cut(s)	668, 825
Bsp1286I	GDGCHC	2 cut(s)	106, 460
Bsp143I	GATC	1 cut(s)	853
Bsp1720I	GCTNAGC	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	1170
BspACI	CCGC	2 cut(s)	943, 1016
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	3 cut(s)	175, 251, 343
BspFNI	CGCG	1 cut(s)	758
BspHI	TCATGA	1 cut(s)	619
BspMI	ACCTGC	1 cut(s)	334
BspTNI	GGTCTC	2 cut(s)	668, 825
BsrDI	GCAATG	2 cut(s)	346, 982
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	4 cut(s)	802, 868, 869, 1170
BssMI	GATC	1 cut(s)	853
BssT1I	CCWWGG	2 cut(s)	802, 1170
Bst2UI	CCWGG	2 cut(s)	870, 987
Bst4CI	ACNGT	6 cut(s)	64, 108, 126, 512, 769, 1069
BstC8I	GCNNGC	2 cut(s)	702, 940
BstDEI	CTNAG	4 cut(s)	183, 238, 330, 467
BstDSI	CCRYGG	1 cut(s)	1170
BstF5I	GGATG	4 cut(s)	490, 580, 844, 1003
BstFNI	CGCG	1 cut(s)	758
BstHHI	GCGC	1 cut(s)	885
BstKTI	GATC	1 cut(s)	856
BstMAI	GTCTC	4 cut(s)	132, 201, 668, 825
BstMBI	GATC	1 cut(s)	853
BstMWI	GCNNNNNNNGC	1 cut(s)	1175
BstNI	CCWGG	2 cut(s)	870, 987
BstNSI	RCATGY	1 cut(s)	779
BstSCI	CCNGG	2 cut(s)	868, 985
BstSFI	CTRYAG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	758
BstV1I	GCAGC	2 cut(s)	474, 1153
BstV2I	GAAGAC	4 cut(s)	12, 65, 464, 1035
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	1170
BtsCI	GGATG	4 cut(s)	490, 580, 844, 1003
BtsIMutI	CAGTG	3 cut(s)	69, 122, 999
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	702, 940
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	1 cut(s)	885
Cfr10I	RCCGGY	1 cut(s)	245
CseI	GACGC	1 cut(s)	323
CsiI	ACCWGGT	1 cut(s)	985
Csp6I	GTAC	1 cut(s)	807
CspAI	ACCGGT	1 cut(s)	245
CviAII	CATG	5 cut(s)	453, 620, 776, 835, 1171
CviQI	GTAC	1 cut(s)	807
DdeI	CTNAG	4 cut(s)	183, 238, 330, 467
DpnI	GATC	1 cut(s)	855
DpnII	GATC	1 cut(s)	853
DrdI	GACNNNNNNGTC	1 cut(s)	1072
DseDI	GACNNNNNNGTC	1 cut(s)	1072
Eco130I	CCWWGG	2 cut(s)	802, 1170
Eco147I	AGGCCT	1 cut(s)	236
Eco31I	GGTCTC	2 cut(s)	668, 825
EcoRII	CCWGG	2 cut(s)	868, 985
EcoT14I	CCWWGG	2 cut(s)	802, 1170
ErhI	CCWWGG	2 cut(s)	802, 1170
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	5 cut(s)	456, 623, 779, 838, 1174
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 1064, 1096
FatI	CATG	5 cut(s)	452, 619, 775, 834, 1170
Fnu4HI	GCNGC	3 cut(s)	488, 943, 1167
FokI	GGATG	4 cut(s)	477, 587, 851, 1010
Fsp4HI	GCNGC	3 cut(s)	488, 943, 1167
FspBI	CTAG	1 cut(s)	857
GlaI	GCGC	1 cut(s)	884
GluI	GCNGC	3 cut(s)	488, 943, 1167
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	1 cut(s)	246
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	885
Hin1II	CATG	5 cut(s)	456, 623, 779, 838, 1174
Hin6I	GCGC	1 cut(s)	883
HinP1I	GCGC	1 cut(s)	883
HincII	GTYRAC	2 cut(s)	762, 781
HindII	GTYRAC	2 cut(s)	762, 781
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	1 cut(s)	32
HpaI	GTTAAC	2 cut(s)	762, 781
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	2 cut(s)	315, 790
Hpy166II	GTNNAC	4 cut(s)	104, 135, 762, 781
Hpy188I	TCNGA	4 cut(s)	37, 184, 241, 274
Hpy188III	TCNNGA	6 cut(s)	86, 95, 494, 620, 914, 956
Hpy8I	GTNNAC	4 cut(s)	104, 135, 762, 781
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	3 cut(s)	150, 178, 361
HpyCH4III	ACNGT	6 cut(s)	64, 108, 126, 512, 769, 1069
HpyCH4IV	ACGT	2 cut(s)	812, 895
HpyCH4V	TGCA	7 cut(s)	104, 311, 344, 416, 490, 526, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1175
HpyF3I	CTNAG	4 cut(s)	183, 238, 330, 467
HpySE526I	ACGT	2 cut(s)	812, 895
Hsp92II	CATG	5 cut(s)	456, 623, 779, 838, 1174
HspAI	GCGC	1 cut(s)	883
KspAI	GTTAAC	2 cut(s)	762, 781
Kzo9I	GATC	1 cut(s)	853
LmnI	GCTCC	2 cut(s)	298, 645
Lsp1109I	GCAGC	2 cut(s)	474, 1153
LweI	GCATC	2 cut(s)	320, 499
MabI	ACCWGGT	1 cut(s)	985
MaeI	CTAG	1 cut(s)	857
MaeII	ACGT	2 cut(s)	812, 895
MaeIII	GTNAC	3 cut(s)	428, 598, 796
MalI	GATC	1 cut(s)	855
MboI	GATC	1 cut(s)	853
MboII	GAAGA	9 cut(s)	17, 67, 70, 464, 863, 1013, 1016, 1040, 1060
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	2 cut(s)	106, 460
MluCI	AATT	5 cut(s)	250, 345, 521, 532, 1061
MluI	ACGCGT	1 cut(s)	756
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	623
MseI	TTAA	6 cut(s)	582, 761, 780, 924, 1071, 1116
MslI	CAYNNNNRTG	1 cut(s)	564
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	2 cut(s)	870, 987
Mva1269I	GAATGC	2 cut(s)	307, 629
MvaI	CCWGG	2 cut(s)	870, 987
MvnI	CGCG	1 cut(s)	758
MwoI	GCNNNNNNNGC	1 cut(s)	1175
NcoI	CCATGG	1 cut(s)	1170
NdeII	GATC	1 cut(s)	853
NlaIII	CATG	5 cut(s)	456, 623, 779, 838, 1174
NmuCI	GTSAC	2 cut(s)	428, 796
NspI	RCATGY	1 cut(s)	779
PagI	TCATGA	1 cut(s)	619
PaqCI	CACCTGC	1 cut(s)	334
PasI	CCCWGGG	1 cut(s)	869
PceI	AGGCCT	1 cut(s)	236
PciI	ACATGT	1 cut(s)	775
PctI	GAATGC	2 cut(s)	307, 629
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	489, 944, 1168
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PscI	ACATGT	1 cut(s)	775
Psp1406I	AACGTT	1 cut(s)	895
Psp6I	CCWGG	2 cut(s)	868, 985
PspGI	CCWGG	2 cut(s)	868, 985
PsuI	RGATCY	1 cut(s)	853
RsaI	GTAC	1 cut(s)	808
RsaNI	GTAC	1 cut(s)	807
RseI	CAYNNNNRTG	1 cut(s)	564
SaqAI	TTAA	6 cut(s)	582, 761, 780, 924, 1071, 1116
SatI	GCNGC	3 cut(s)	488, 943, 1167
Sau3AI	GATC	1 cut(s)	853
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	2 cut(s)	870, 987
SduI	GDGCHC	2 cut(s)	106, 460
SexAI	ACCWGGT	1 cut(s)	985
SfaNI	GCATC	2 cut(s)	320, 499
SfcI	CTRYAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	95, 156
SmoI	CTYRAG	2 cut(s)	95, 156
Sse9I	AATT	5 cut(s)	250, 345, 521, 532, 1061
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	2 cut(s)	943, 1016
SspMI	CTAG	1 cut(s)	857
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	868, 985
StyI	CCWWGG	2 cut(s)	802, 1170
TaaI	ACNGT	6 cut(s)	64, 108, 126, 512, 769, 1069
TaiI	ACGT	2 cut(s)	815, 898
TaqI	TCGA	2 cut(s)	772, 845
TasI	AATT	5 cut(s)	250, 345, 521, 532, 1061
TauI	GCSGC	1 cut(s)	945
Tru1I	TTAA	6 cut(s)	582, 761, 780, 924, 1071, 1116
Tru9I	TTAA	6 cut(s)	582, 761, 780, 924, 1071, 1116
TscAI	CASTG	3 cut(s)	69, 129, 999
TseFI	GTSAC	2 cut(s)	428, 796
TseI	GCWGC	2 cut(s)	487, 1166
Tsp45I	GTSAC	2 cut(s)	428, 796
TspDTI	ATGAA	4 cut(s)	608, 636, 705, 1014
TspRI	CASTG	3 cut(s)	69, 129, 999
VneI	GTGCAC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	1 cut(s)	779
XspI	CTAG	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.