Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015646

Physical Location & Seq

Genomic Coordinates Forward (+)

3181353 .. 3183641

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGACAATTGATATCAGGGTATTGTCACAAGAACTTGCTAGCACCCCACCTAGAGGTTGGAACTCCTATAACGCAATCAGCTGGACTATTACAGAGAAAGAGTTTTTGCAAAATGCCGAAATCATCTCCAAGAAGTTACTTCCTCATGGATATGAGTATGTAGTTGTGGACCATCTGTGGTATAGGAGAAATGTGACCGGCGCTAGTGCAGACAATCTTGGGTTTGATGTAATCGATGAATGGGGGAGACCGATGCCTGATCCAGATAGGTGGCCTAGCTCCAAAGGTGGGAAAGGGTTTACTGAAATGGCAGATAGAATACATAAAATGGGTTTGAAGTTTGGAATTAATGTTATGAGAGGAATAAACACACAAGCTGTAGAAGCCAATACTCGTATCTTGGATCCTCTCTTGGGGAACGTTTACGATCATGTCAATGGAAAAATTTGGACTGCACAAGATATAGGGATCAAGGAAAGGACTTGTGCTGGGATGCAAAATGGTTTCATGAGTGTGAATACAACCTTTCAAGCAGGAAGGTTCTTCTTGGCAGATCTCTATCAACTGTATGCCAGTTGGGGTGTTGATTTTGTGAGACAAGATTGTGTGTTTGGTAAGGACTTGGATATGAATGAAATATCCTATGCATCATTGCTTTTGAGGAATCAAAGACCTATATTATATTCTGTATCTCCTGGAATTGGAGCAACACCTATGATGGCCAAAAGTGTAAGTAGTGTAGTGAACATGTACAGTATAATTGGGAATGATTGGGATGACTGGGGAGATGTTGTAGCCCGTTTTGATGTTGCCAGGGATTTTGCTGCTGCGAATATGATTGGAGCAAACAGCTCATGGCCTGACTTAGATATGCTACCACTAGGATGGCTTAATGATGGAGATTTCAATGAAGGTCAACATAGAGAGACTAACCTCACACTAGAGGAGCAAAGAACTATGTTTCCATACATGAAATCTAAAGGACTTCGCTCTTGGGTTGCAACTGGAAGACAAGGAGAAATATATGTTGCTTTATTTAATCTGAGCTCAAAGACGACTACTATAACCGCAGAAAAATCAGACTTGGCCAAGGCACTTCCTGGGACAAAATTGACTACCAGAGCTTCCTGCAAAAGCAATGAAGTATGGAGCCGACAAGACCTGGGGATTATAGAACACTCCATATCCATTTCTGTAGAAACCCATGGGACTGCACTAGTTGTCCTACATTGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005994 GO:0005995 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006672 GO:0006677 GO:0006687 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015925 GO:0016042 GO:0016052 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019377 GO:0030149 GO:0034641 GO:0043603 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044262 GO:0044275 GO:0044424 GO:0044464 GO:0046352 GO:0046466 GO:0046477 GO:0046479 GO:0046514 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Melibiase_2

Protein Analysis

413

Amino Acids

46.07

Weight (kDa)

5.68

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_C	PF17801	328 - 408	2.6e-09	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015646)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05560
rosa_chinensis	RchiOBHm_Chr3g0454341
rosa_laevigata	RLG00000025459
rosa_multiflora	Rmu_sc0000006.1_g000022 Rmu_sc0007209.1_g000014
rosa_roxburghii	Rroxscaffold_165G00437170 Rroxscaffold_6G00425190
rosa_rugosa	Rorug02G0654200 Rorug02G0654300 Rorug02G0654400 Rorug02G0654500
rosa_samantha	Rh3AG058400 Rh3BG060100 Rh3CG059200 Rh3DG060500
rosa_wichuraiana	Rw3G004490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1068
AclI	AACGTT	1 cut(s)	420
AclWI	GGATC	4 cut(s)	254, 398, 411, 476
AcoI	YGGCCR	2 cut(s)	720, 1086
AcsI	RAATTY	1 cut(s)	444
AfaI	GTAC	1 cut(s)	752
AfiI	CCNNNNNNNGG	4 cut(s)	53, 288, 413, 701
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	3 cut(s)	337, 530, 907
AhlI	ACTAGT	1 cut(s)	1216
AjnI	CCWGG	4 cut(s)	694, 812, 1099, 1161
AloI	GAACNNNNNNTCC	2 cut(s)	946, 978
AluBI	AGCT	6 cut(s)	81, 279, 377, 852, 1047, 1124
AluI	AGCT	6 cut(s)	81, 279, 377, 852, 1047, 1124
Alw21I	GWGCWC	1 cut(s)	1049
Alw26I	GTCTC	3 cut(s)	241, 589, 920
AlwI	GGATC	4 cut(s)	254, 398, 411, 476
AoxI	GGCC	4 cut(s)	272, 720, 857, 1086
ApeKI	GCWGC	2 cut(s)	824, 827
ApoI	RAATTY	1 cut(s)	444
AseI	ATTAAT	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	169
BalI	TGGCCA	2 cut(s)	722, 1088
BamHI	GGATCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	1049
BbsI	GAAGAC	1 cut(s)	1015
Bbv12I	GWGCWC	1 cut(s)	1049
BbvI	GCAGC	2 cut(s)	811, 814
BccI	CCATC	4 cut(s)	180, 712, 879, 890
BciT130I	CCWGG	4 cut(s)	696, 814, 1101, 1163
BcoDI	GTCTC	3 cut(s)	241, 589, 920
BcuI	ACTAGT	1 cut(s)	1216
BfaI	CTAG	7 cut(s)	39, 51, 204, 276, 881, 941, 1217
BfmI	CTRYAG	2 cut(s)	378, 1194
BfoI	RGCGCY	1 cut(s)	204
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	2 cut(s)	825, 828
BlsI	GCNGC	2 cut(s)	826, 829
Bme1390I	CCNGG	4 cut(s)	696, 814, 1101, 1163
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	405, 1151
BmrFI	CCNGG	4 cut(s)	696, 814, 1101, 1163
BmrI	ACTGGG	1 cut(s)	790
BmsI	GCATC	3 cut(s)	243, 483, 656
BmtI	GCTAGC	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	790
BpiI	GAAGAC	1 cut(s)	1015
Bsa29I	ATCGAT	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	5 cut(s)	813, 1089, 1100, 1162, 1204
BsaXI	ACNNNNNCTCC	2 cut(s)	777, 807
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 288, 413, 701
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	3 cut(s)	573, 785, 1009
Bse3DI	GCAATG	3 cut(s)	650, 1144, 1228
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	4 cut(s)	696, 814, 1101, 1163
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	5 cut(s)	813, 1089, 1100, 1162, 1204
BseGI	GGATG	3 cut(s)	498, 781, 890
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	4 cut(s)	53, 288, 413, 701
BseMI	GCAATG	3 cut(s)	650, 1144, 1228
BseMII	CTCAG	1 cut(s)	1034
BseNI	ACTGG	3 cut(s)	573, 785, 1009
BseRI	GAGGAG	1 cut(s)	959
BseXI	GCAGC	2 cut(s)	811, 814
BseYI	CCCAGC	1 cut(s)	488
BsgI	GTGCAG	3 cut(s)	228, 438, 1197
BshFI	GGCC	4 cut(s)	274, 722, 859, 1088
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	1049
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	1117, 1222
BslI	CCNNNNNNNGG	4 cut(s)	53, 288, 413, 701
BsmAI	GTCTC	3 cut(s)	241, 589, 920
BsmFI	GGGAC	2 cut(s)	1117, 1222
BsnI	GGCC	4 cut(s)	274, 722, 859, 1088
Bso31I	GGTCTC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	1049
Bsp1407I	TGTACA	1 cut(s)	750
Bsp143I	GATC	5 cut(s)	259, 403, 427, 468, 553
Bsp19I	CCATGG	1 cut(s)	1204
BspACI	CCGC	1 cut(s)	1068
BspANI	GGCC	4 cut(s)	274, 722, 859, 1088
BspCNI	CTCAG	1 cut(s)	1035
BspDI	ATCGAT	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	405, 1151
BspOI	GCTAGC	1 cut(s)	42
BspPI	GGATC	4 cut(s)	254, 398, 411, 476
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	3 cut(s)	650, 1144, 1228
BsrFI	RCCGGY	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	750
BsrI	ACTGG	3 cut(s)	573, 785, 1009
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	5 cut(s)	813, 1089, 1100, 1162, 1204
BssMI	GATC	5 cut(s)	259, 403, 427, 468, 553
BssT1I	CCWWGG	2 cut(s)	1089, 1204
Bst2UI	CCWGG	4 cut(s)	696, 814, 1101, 1163
Bst4CI	ACNGT	2 cut(s)	567, 755
BstAUI	TGTACA	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	865, 1043
BstDSI	CCRYGG	1 cut(s)	1204
BstF5I	GGATG	3 cut(s)	498, 781, 890
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	5 cut(s)	262, 406, 430, 471, 556
BstMAI	GTCTC	3 cut(s)	241, 589, 920
BstMBI	GATC	5 cut(s)	259, 403, 427, 468, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	4 cut(s)	696, 814, 1101, 1163
BstNSI	RCATGY	1 cut(s)	751
BstSCI	CCNGG	4 cut(s)	694, 812, 1099, 1161
BstSFI	CTRYAG	2 cut(s)	378, 1194
BstV1I	GCAGC	2 cut(s)	811, 814
BstV2I	GAAGAC	1 cut(s)	1015
BstX2I	RGATCY	2 cut(s)	403, 553
BstXI	CCANNNNNNTGG	2 cut(s)	270, 885
BstYI	RGATCY	2 cut(s)	403, 553
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	274, 722, 859, 1088
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	1204
BtsCI	GGATG	3 cut(s)	498, 781, 890
Cac8I	GCNNGC	1 cut(s)	40
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	751
CviAII	CATG	7 cut(s)	146, 431, 508, 748, 855, 970, 1205
CviQI	GTAC	1 cut(s)	751
DdeI	CTNAG	2 cut(s)	865, 1043
DpnI	GATC	5 cut(s)	261, 405, 429, 470, 555
DpnII	GATC	5 cut(s)	259, 403, 427, 468, 553
EaeI	YGGCCR	2 cut(s)	720, 1086
Ecl136II	GAGCTC	1 cut(s)	1047
Eco130I	CCWWGG	2 cut(s)	1089, 1204
Eco24I	GRGCYC	1 cut(s)	1049
Eco31I	GGTCTC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	1047
EcoICRI	GAGCTC	1 cut(s)	1047
EcoRII	CCWGG	4 cut(s)	694, 812, 1099, 1161
EcoRV	GATATC	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	1089, 1204
EcoT22I	ATGCAT	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	1049
ErhI	CCWWGG	2 cut(s)	1089, 1204
FaeI	CATG	7 cut(s)	149, 434, 511, 751, 858, 973, 1208
FaqI	GGGAC	2 cut(s)	1117, 1222
FatI	CATG	7 cut(s)	145, 430, 507, 747, 854, 969, 1204
Fnu4HI	GCNGC	2 cut(s)	825, 828
FokI	GGATG	3 cut(s)	505, 788, 897
FriOI	GRGCYC	1 cut(s)	1049
Fsp4HI	GCNGC	2 cut(s)	825, 828
FspBI	CTAG	7 cut(s)	39, 51, 204, 276, 881, 941, 1217
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	2 cut(s)	825, 828
GsaI	CCCAGC	1 cut(s)	492
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	4 cut(s)	274, 722, 859, 1088
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	7 cut(s)	149, 434, 511, 751, 858, 973, 1208
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	917
HindII	GTYRAC	1 cut(s)	917
HinfI	GANTC	1 cut(s)	664
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	5 cut(s)	169, 300, 424, 745, 917
Hpy188I	TCNGA	2 cut(s)	1044, 1081
Hpy188III	TCNNGA	2 cut(s)	263, 508
Hpy8I	GTNNAC	5 cut(s)	169, 300, 424, 745, 917
HpyAV	CCTTC	2 cut(s)	531, 905
HpyCH4III	ACNGT	2 cut(s)	567, 755
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	9 cut(s)	109, 209, 455, 496, 647, 1001, 1131, 1214, 1233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	2 cut(s)	865, 1043
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	7 cut(s)	149, 434, 511, 751, 858, 973, 1208
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	259, 403, 427, 468, 553
LmnI	GCTCC	5 cut(s)	284, 704, 842, 946, 1149
Lsp1109I	GCAGC	2 cut(s)	811, 814
LweI	GCATC	3 cut(s)	243, 483, 656
MaeI	CTAG	7 cut(s)	39, 51, 204, 276, 881, 941, 1217
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	3 cut(s)	24, 135, 193
MalI	GATC	5 cut(s)	261, 405, 429, 470, 555
MboI	GATC	5 cut(s)	259, 403, 427, 468, 553
MboII	GAAGA	2 cut(s)	535, 1020
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	2 cut(s)	403, 553
MhlI	GDGCHC	1 cut(s)	1049
MlsI	TGGCCA	2 cut(s)	722, 1088
MluCI	AATT	6 cut(s)	6, 345, 444, 699, 759, 1109
MluNI	TGGCCA	2 cut(s)	722, 1088
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	7 cut(s)	47, 153, 353, 417, 654, 937, 944
Mox20I	TGGCCA	2 cut(s)	722, 1088
Mph1103I	ATGCAT	1 cut(s)	649
MscI	TGGCCA	2 cut(s)	722, 1088
MseI	TTAA	3 cut(s)	348, 891, 1038
MslI	CAYNNNNRTG	4 cut(s)	150, 435, 512, 883
Msp20I	TGGCCA	2 cut(s)	722, 1088
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	4 cut(s)	696, 814, 1101, 1163
MunI	CAATTG	1 cut(s)	6
MvaI	CCWGG	4 cut(s)	696, 814, 1101, 1163
MwoI	GCNNNNNNNGC	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	1204
NdeII	GATC	5 cut(s)	259, 403, 427, 468, 553
NheI	GCTAGC	1 cut(s)	38
NlaIII	CATG	7 cut(s)	149, 434, 511, 751, 858, 973, 1208
NlaIV	GGNNCC	2 cut(s)	405, 1151
NmuCI	GTSAC	2 cut(s)	24, 193
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	1 cut(s)	751
PagI	TCATGA	1 cut(s)	507
PciI	ACATGT	1 cut(s)	747
PfeI	GAWTC	1 cut(s)	664
PfoI	TCCNGGA	1 cut(s)	694
PkrI	GCNGC	2 cut(s)	826, 829
PscI	ACATGT	1 cut(s)	747
PshBI	ATTAAT	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	1049
Psp1406I	AACGTT	1 cut(s)	420
Psp6I	CCWGG	4 cut(s)	694, 812, 1099, 1161
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	4 cut(s)	694, 812, 1099, 1161
PspN4I	GGNNCC	2 cut(s)	405, 1151
PspPI	GGNCC	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	403, 553
PvuII	CAGCTG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
RseI	CAYNNNNRTG	4 cut(s)	150, 435, 512, 883
SacI	GAGCTC	1 cut(s)	1049
SaqAI	TTAA	3 cut(s)	348, 891, 1038
SatI	GCNGC	2 cut(s)	825, 828
Sau3AI	GATC	5 cut(s)	259, 403, 427, 468, 553
Sau96I	GGNCC	1 cut(s)	169
ScrFI	CCNGG	4 cut(s)	696, 814, 1101, 1163
SduI	GDGCHC	1 cut(s)	1049
SfaNI	GCATC	3 cut(s)	243, 483, 656
SfcI	CTRYAG	2 cut(s)	378, 1194
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	4 cut(s)	150, 435, 512, 883
SpeI	ACTAGT	1 cut(s)	1216
Sse9I	AATT	6 cut(s)	6, 345, 444, 699, 759, 1109
SsiI	CCGC	1 cut(s)	1068
SspMI	CTAG	7 cut(s)	39, 51, 204, 276, 881, 941, 1217
SstI	GAGCTC	1 cut(s)	1049
StyD4I	CCNGG	4 cut(s)	694, 812, 1099, 1161
StyI	CCWWGG	2 cut(s)	1089, 1204
TaaI	ACNGT	2 cut(s)	567, 755
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	234
TaqII	GACCGA	1 cut(s)	265
TasI	AATT	6 cut(s)	6, 345, 444, 699, 759, 1109
TatI	WGTACW	1 cut(s)	750
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	3 cut(s)	348, 891, 1038
Tru9I	TTAA	3 cut(s)	348, 891, 1038
TseFI	GTSAC	2 cut(s)	24, 193
TseI	GCWGC	2 cut(s)	824, 827
Tsp45I	GTSAC	2 cut(s)	24, 193
TspDTI	ATGAA	7 cut(s)	252, 496, 644, 648, 924, 986, 1155
VpaK11BI	GGWCC	1 cut(s)	169
VspI	ATTAAT	1 cut(s)	348
XapI	RAATTY	1 cut(s)	444
XceI	RCATGY	1 cut(s)	751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	7 cut(s)	39, 51, 204, 276, 881, 941, 1217
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.