Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007209.1

Orthogroup ID

OG0015646

Physical Location & Seq

Genomic Coordinates Reverse (-)

69561 .. 73384

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007209.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

atggagactataacatggagaaaacgaagactaagaactggaacaagaggaagattcctattcagctatctctgtttcttcctcaccagctcggggcctcaactttcgagtcacatgaagagaaccaatttcgagcaaaactctagccacaatgaagatggatcaaggtgggttgatcttcttaatcagagggtatggtcacaagaacttgctagcaccccacccagaggttggaactcctataacgcaatcagctggactattacagaggaagagttcttgcaaaatgctgaaatcatctccaagaagttacttcctcacggatatgagtatgtagttgtggaccatctgtggtataggagaaatgtgacctgcgctagtgtagactctcttggagttgatgtaattgatgaatgggggagaccgatgcctgacccagataggtggcctagctccagaggtgggaaagggtttactgaagtggcagacagagtacataaaatgggtttgaagtttggaattaatgttatgagaggaataaacacacaagctgtaaaagccaatacgcagatcttggatcctctctcggggaatgtttatgattatttcaatggaaaaatttggactgcacaagatatagggatcaaggagaggacttgtgctcggatgcaaaatggtttcatgagtgtggatacaaccttgcaagctggaaggttcttcttggcagacctctatcaactgtatgccaattggggtgttgattttgtgaaacaggactgcgtgtttggtaatgacttggatatgaatgaaatatatcatgcatcatggcttttgaggaatgatagacctatattgtattctgtatctcctggaattggagcaacaaccatgatggccaaaagagtaagtggtgtagtgaacatgtacagtataaacgggcataactgggatgactgggaagatgttgttgcccgttttgatgttgccagggattttgctgctgctaatatgattggagcaaacagctcgtggcctgacttagatatgcttcccctgggatggcttagtgatgcaggttcaaatgaaggtccacacagaacaactaacctcacattagaggagcaaagaactatgatgaccttgtggtgcatggccaagtctcctctcatgtttggaggagatctgagaaagcttgatgatacaacttacagtatcctaacaaatcctaccttgctagaggtcaattcttttagctcaaataataaggagtttccatacataaaatctgaaggacttcgctcttgggttgcaactggaagacaacgagaaatatatgtggctttatttaatctgaactcaaagaagactactataaccgctcaaaaatcagacttagccagggcacttcctgggacaacattgactactagagcttcctgcaaaggcaaagaagtatggagccgactagacttggggattatagaccactccatatccattgctgtagaaacccatgggactgcactagttgtcctacattgcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005994 GO:0005995 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006672 GO:0006677 GO:0006687 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015925 GO:0016042 GO:0016052 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019377 GO:0030149 GO:0034641 GO:0043603 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044262 GO:0044275 GO:0044424 GO:0044464 GO:0046352 GO:0046466 GO:0046477 GO:0046479 GO:0046514 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Melibiase_2

Protein Analysis

515

Amino Acids

58.36

Weight (kDa)

6.84

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015646)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05560
rosa_chinensis	RchiOBHm_Chr3g0454341
rosa_laevigata	RLG00000025459
rosa_multiflora	Rmu_sc0000006.1_g000022 Rmu_sc0007209.1_g000014
rosa_roxburghii	Rroxscaffold_165G00437170 Rroxscaffold_6G00425190
rosa_rugosa	Rorug02G0654200 Rorug02G0654300 Rorug02G0654400 Rorug02G0654500
rosa_samantha	Rh3AG058400 Rh3BG060100 Rh3CG059200 Rh3DG060500
rosa_wichuraiana	Rw3G004490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	380, 1064
AccB7I	CCANNNNNTGG	1 cut(s)	231
AccBSI	CCGCTC	1 cut(s)	1379
AccI	GTMKAC	1 cut(s)	384
AciI	CCGC	1 cut(s)	1377
AclWI	GGATC	4 cut(s)	169, 572, 585, 650
AcoI	YGGCCR	2 cut(s)	894, 1152
AcsI	RAATTY	1 cut(s)	618
AcuI	CTGAAG	2 cut(s)	498, 1308
AfaI	GTAC	2 cut(s)	495, 926
AfiI	CCNNNNNNNGG	7 cut(s)	93, 227, 231, 462, 587, 875, 1059
AflIII	ACRYGT	1 cut(s)	921
AgsI	TTSAA	3 cut(s)	511, 610, 1080
AhlI	ACTAGT	1 cut(s)	1525
AjnI	CCWGG	5 cut(s)	868, 986, 1053, 1397, 1408
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	2 cut(s)	415, 1164
AlwI	GGATC	4 cut(s)	169, 572, 585, 650
Ama87I	CYCGRG	2 cut(s)	91, 586
AoxI	GGCC	5 cut(s)	95, 446, 894, 1031, 1152
ApeKI	GCWGC	2 cut(s)	998, 1001
ApoI	RAATTY	1 cut(s)	618
ArsI	GACNNNNNNTTYG	2 cut(s)	767, 799
AseI	ATTAAT	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	1293
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	3 cut(s)	95, 343, 1088
AsuHPI	GGTGA	1 cut(s)	76
AsuNHI	GCTAGC	1 cut(s)	212
AvaI	CYCGRG	2 cut(s)	91, 586
AvaII	GGWCC	2 cut(s)	343, 1088
BaeGI	GKGCMC	1 cut(s)	1405
BalI	TGGCCA	2 cut(s)	896, 1154
BamHI	GGATCC	1 cut(s)	577
BauI	CACGAG	1 cut(s)	1027
BbsI	GAAGAC	3 cut(s)	34, 1324, 1370
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	2 cut(s)	985, 988
BccI	CCATC	4 cut(s)	152, 354, 886, 1053
BcgI	CGANNNNNNTGC	2 cut(s)	1008, 1042
BciT130I	CCWGG	5 cut(s)	870, 988, 1055, 1399, 1410
BciVI	GTATCC	2 cut(s)	685, 1223
BcoDI	GTCTC	2 cut(s)	415, 1164
BcuI	ACTAGT	1 cut(s)	1525
BfaI	CTAG	8 cut(s)	144, 213, 378, 450, 1235, 1428, 1466, 1526
BfmI	CTRYAG	1 cut(s)	1503
BfuAI	ACCTGC	2 cut(s)	380, 1064
BfuI	GTATCC	2 cut(s)	685, 1223
BglII	AGATCT	2 cut(s)	570, 1180
BisI	GCNGC	2 cut(s)	999, 1002
BlsI	GCNGC	2 cut(s)	1000, 1003
Bme1390I	CCNGG	5 cut(s)	870, 988, 1055, 1399, 1410
Bme18I	GGWCC	2 cut(s)	343, 1088
BmeT110I	CYCGRG	2 cut(s)	91, 586
BmgT120I	GGNCC	3 cut(s)	95, 343, 1088
BmiI	GGNNCC	3 cut(s)	96, 579, 1460
BmrFI	CCNGG	5 cut(s)	870, 988, 1055, 1399, 1410
BmrI	ACTGGG	2 cut(s)	955, 964
BmsI	GCATC	4 cut(s)	417, 657, 830, 1060
BmtI	GCTAGC	1 cut(s)	216
BmuI	ACTGGG	2 cut(s)	955, 964
BpiI	GAAGAC	3 cut(s)	34, 1324, 1370
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	6 cut(s)	987, 1053, 1054, 1398, 1409, 1513
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	7 cut(s)	93, 227, 231, 462, 587, 875, 1059
Bse1I	ACTGG	4 cut(s)	43, 950, 959, 1318
Bse3DI	GCAATG	2 cut(s)	1497, 1537
BseBI	CCWGG	5 cut(s)	870, 988, 1055, 1399, 1410
BseDI	CCNNGG	6 cut(s)	987, 1053, 1054, 1398, 1409, 1513
BseGI	GGATG	3 cut(s)	672, 955, 1064
BseLI	CCNNNNNNNGG	7 cut(s)	93, 227, 231, 462, 587, 875, 1059
BseMI	GCAATG	2 cut(s)	1497, 1537
BseMII	CTCAG	1 cut(s)	1175
BseNI	ACTGG	4 cut(s)	43, 950, 959, 1318
BseRI	GAGGAG	3 cut(s)	1133, 1152, 1191
BseSI	GKGCMC	1 cut(s)	1405
BseXI	GCAGC	2 cut(s)	985, 988
BsgI	GTGCAG	2 cut(s)	612, 1506
BshFI	GGCC	5 cut(s)	97, 448, 896, 1033, 1154
BsiHKAI	GWGCWC	1 cut(s)	664
BsiHKCI	CYCGRG	2 cut(s)	91, 586
BslFI	GGGAC	2 cut(s)	1426, 1531
BslI	CCNNNNNNNGG	7 cut(s)	93, 227, 231, 462, 587, 875, 1059
BsmAI	GTCTC	2 cut(s)	415, 1164
BsmFI	GGGAC	2 cut(s)	1426, 1531
BsnI	GGCC	5 cut(s)	97, 448, 896, 1033, 1154
Bso31I	GGTCTC	1 cut(s)	415
BsoBI	CYCGRG	2 cut(s)	91, 586
Bsp1286I	GDGCHC	2 cut(s)	664, 1405
Bsp1407I	TGTACA	1 cut(s)	924
Bsp143I	GATC	6 cut(s)	161, 175, 570, 577, 642, 1180
Bsp19I	CCATGG	1 cut(s)	1513
BspACI	CCGC	1 cut(s)	1377
BspANI	GGCC	5 cut(s)	97, 448, 896, 1033, 1154
BspCNI	CTCAG	1 cut(s)	1176
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	3 cut(s)	96, 579, 1460
BspMI	ACCTGC	2 cut(s)	380, 1064
BspOI	GCTAGC	1 cut(s)	216
BspPI	GGATC	4 cut(s)	169, 572, 585, 650
BspTNI	GGTCTC	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	1379
BsrDI	GCAATG	2 cut(s)	1497, 1537
BsrGI	TGTACA	1 cut(s)	924
BsrI	ACTGG	4 cut(s)	43, 950, 959, 1318
BssECI	CCNNGG	6 cut(s)	987, 1053, 1054, 1398, 1409, 1513
BssMI	GATC	6 cut(s)	161, 175, 570, 577, 642, 1180
BssSI	CACGAG	1 cut(s)	1027
BssT1I	CCWWGG	1 cut(s)	1513
Bst2BI	CACGAG	1 cut(s)	1027
Bst2UI	CCWGG	5 cut(s)	870, 988, 1055, 1399, 1410
Bst4CI	ACNGT	3 cut(s)	741, 929, 1211
Bst6I	CTCTTC	2 cut(s)	113, 267
BstAUI	TGTACA	1 cut(s)	924
BstC8I	GCNNGC	2 cut(s)	214, 705
BstDEI	CTNAG	5 cut(s)	32, 1039, 1064, 1184, 1393
BstDSI	CCRYGG	1 cut(s)	1513
BstF5I	GGATG	3 cut(s)	672, 955, 1064
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	6 cut(s)	164, 178, 573, 580, 645, 1183
BstMAI	GTCTC	2 cut(s)	415, 1164
BstMBI	GATC	6 cut(s)	161, 175, 570, 577, 642, 1180
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNI	CCWGG	5 cut(s)	870, 988, 1055, 1399, 1410
BstNSI	RCATGY	1 cut(s)	925
BstSCI	CCNGG	5 cut(s)	868, 986, 1053, 1397, 1408
BstSFI	CTRYAG	1 cut(s)	1503
BstSLI	GKGCMC	1 cut(s)	1405
BstV1I	GCAGC	2 cut(s)	985, 988
BstV2I	GAAGAC	3 cut(s)	34, 1324, 1370
BstX2I	RGATCY	3 cut(s)	570, 577, 1180
BstXI	CCANNNNNNTGG	1 cut(s)	444
BstYI	RGATCY	3 cut(s)	570, 577, 1180
BsuI	GTATCC	2 cut(s)	685, 1223
BsuRI	GGCC	5 cut(s)	97, 448, 896, 1033, 1154
BtgI	CCRYGG	1 cut(s)	1513
BtsCI	GGATG	3 cut(s)	672, 955, 1064
BveI	ACCTGC	2 cut(s)	380, 1064
Cac8I	GCNNGC	2 cut(s)	214, 705
CciI	TCATGA	1 cut(s)	681
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	3 cut(s)	95, 343, 1088
Csp6I	GTAC	2 cut(s)	494, 925
CviQI	GTAC	2 cut(s)	494, 925
DdeI	CTNAG	5 cut(s)	32, 1039, 1064, 1184, 1393
DpnI	GATC	6 cut(s)	163, 177, 572, 579, 644, 1182
DpnII	GATC	6 cut(s)	161, 175, 570, 577, 642, 1180
EaeI	YGGCCR	2 cut(s)	894, 1152
Eam1104I	CTCTTC	2 cut(s)	113, 267
EarI	CTCTTC	2 cut(s)	113, 267
Eco130I	CCWWGG	1 cut(s)	1513
Eco31I	GGTCTC	1 cut(s)	415
Eco47I	GGWCC	2 cut(s)	343, 1088
Eco57I	CTGAAG	2 cut(s)	498, 1308
Eco88I	CYCGRG	2 cut(s)	91, 586
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRII	CCWGG	5 cut(s)	868, 986, 1053, 1397, 1408
EcoT14I	CCWWGG	1 cut(s)	1513
EcoT22I	ATGCAT	1 cut(s)	823
ErhI	CCWWGG	1 cut(s)	1513
FaqI	GGGAC	2 cut(s)	1426, 1531
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	999, 1002
FokI	GGATG	3 cut(s)	679, 962, 1071
Fsp4HI	GCNGC	2 cut(s)	999, 1002
FspBI	CTAG	8 cut(s)	144, 213, 378, 450, 1235, 1428, 1466, 1526
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	2 cut(s)	999, 1002
GsuI	CTGGAG	1 cut(s)	439
HaeIII	GGCC	5 cut(s)	97, 448, 896, 1033, 1154
HhaI	GCGC	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HindIII	AAGCTT	1 cut(s)	1190
HinfI	GANTC	3 cut(s)	54, 109, 386
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	5 cut(s)	343, 385, 474, 919, 1091
Hpy188I	TCNGA	6 cut(s)	189, 666, 1185, 1288, 1353, 1390
Hpy188III	TCNNGA	2 cut(s)	456, 682
Hpy8I	GTNNAC	5 cut(s)	343, 385, 474, 919, 1091
HpyAV	CCTTC	3 cut(s)	705, 1079, 1283
HpyCH4III	ACNGT	3 cut(s)	741, 929, 1211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	5 cut(s)	32, 1039, 1064, 1184, 1393
HspAI	GCGC	1 cut(s)	375
Kzo9I	GATC	6 cut(s)	161, 175, 570, 577, 642, 1180
LmnI	GCTCC	5 cut(s)	458, 878, 1016, 1120, 1458
Lsp1109I	GCAGC	2 cut(s)	985, 988
LweI	GCATC	4 cut(s)	417, 657, 830, 1060
MaeI	CTAG	8 cut(s)	144, 213, 378, 450, 1235, 1428, 1466, 1526
MaeIII	GTNAC	4 cut(s)	110, 198, 309, 367
MalI	GATC	6 cut(s)	163, 177, 572, 579, 644, 1182
MbiI	CCGCTC	1 cut(s)	1379
MboI	GATC	6 cut(s)	161, 175, 570, 577, 642, 1180
MfeI	CAATTG	1 cut(s)	748
MflI	RGATCY	3 cut(s)	570, 577, 1180
MhlI	GDGCHC	2 cut(s)	664, 1405
MlsI	TGGCCA	2 cut(s)	896, 1154
MluCI	AATT	8 cut(s)	127, 405, 519, 618, 748, 873, 1243, 1543
MluNI	TGGCCA	2 cut(s)	896, 1154
MlyI	GAGTC	2 cut(s)	118, 380
MmeI	TCCRAC	1 cut(s)	212
Mox20I	TGGCCA	2 cut(s)	896, 1154
Mph1103I	ATGCAT	1 cut(s)	823
MroXI	GAANNNNTTC	1 cut(s)	1293
MscI	TGGCCA	2 cut(s)	896, 1154
MseI	TTAA	3 cut(s)	183, 522, 1347
MslI	CAYNNNNRTG	2 cut(s)	324, 686
Msp20I	TGGCCA	2 cut(s)	896, 1154
MspA1I	CMGCKG	1 cut(s)	255
MspR9I	CCNGG	5 cut(s)	870, 988, 1055, 1399, 1410
MunI	CAATTG	1 cut(s)	748
MvaI	CCWGG	5 cut(s)	870, 988, 1055, 1399, 1410
MwoI	GCNNNNNNNGC	1 cut(s)	557
NcoI	CCATGG	1 cut(s)	1513
NdeII	GATC	6 cut(s)	161, 175, 570, 577, 642, 1180
NheI	GCTAGC	1 cut(s)	212
NlaIV	GGNNCC	3 cut(s)	96, 579, 1460
NmuCI	GTSAC	3 cut(s)	110, 198, 367
NsiI	ATGCAT	1 cut(s)	823
NspI	RCATGY	1 cut(s)	925
PagI	TCATGA	1 cut(s)	681
PasI	CCCWGGG	1 cut(s)	1054
PciI	ACATGT	1 cut(s)	921
PdmI	GAANNNNTTC	1 cut(s)	1293
PfeI	GAWTC	1 cut(s)	54
PflMI	CCANNNNNTGG	1 cut(s)	231
PfoI	TCCNGGA	1 cut(s)	868
PkrI	GCNGC	2 cut(s)	1000, 1003
PleI	GAGTC	2 cut(s)	117, 380
PpsI	GAGTC	2 cut(s)	117, 380
PscI	ACATGT	1 cut(s)	921
PshBI	ATTAAT	1 cut(s)	522
Psp6I	CCWGG	5 cut(s)	868, 986, 1053, 1397, 1408
PspGI	CCWGG	5 cut(s)	868, 986, 1053, 1397, 1408
PspN4I	GGNNCC	3 cut(s)	96, 579, 1460
PspPI	GGNCC	3 cut(s)	95, 343, 1088
PsuI	RGATCY	3 cut(s)	570, 577, 1180
PvuII	CAGCTG	1 cut(s)	255
RsaI	GTAC	2 cut(s)	495, 926
RsaNI	GTAC	2 cut(s)	494, 925
RseI	CAYNNNNRTG	2 cut(s)	324, 686
SaqAI	TTAA	3 cut(s)	183, 522, 1347
SatI	GCNGC	2 cut(s)	999, 1002
Sau3AI	GATC	6 cut(s)	161, 175, 570, 577, 642, 1180
Sau96I	GGNCC	3 cut(s)	95, 343, 1088
SchI	GAGTC	2 cut(s)	118, 380
ScrFI	CCNGG	5 cut(s)	870, 988, 1055, 1399, 1410
SduI	GDGCHC	2 cut(s)	664, 1405
SfaNI	GCATC	4 cut(s)	417, 657, 830, 1060
SfcI	CTRYAG	1 cut(s)	1503
SinI	GGWCC	2 cut(s)	343, 1088
SmiMI	CAYNNNNRTG	2 cut(s)	324, 686
SpeI	ACTAGT	1 cut(s)	1525
Sse9I	AATT	8 cut(s)	127, 405, 519, 618, 748, 873, 1243, 1543
SsiI	CCGC	1 cut(s)	1377
SspMI	CTAG	8 cut(s)	144, 213, 378, 450, 1235, 1428, 1466, 1526
StyD4I	CCNGG	5 cut(s)	868, 986, 1053, 1397, 1408
StyI	CCWWGG	1 cut(s)	1513
TaaI	ACNGT	3 cut(s)	741, 929, 1211
TaqI	TCGA	2 cut(s)	107, 132
TaqII	GACCGA	1 cut(s)	439
TasI	AATT	8 cut(s)	127, 405, 519, 618, 748, 873, 1243, 1543
TatI	WGTACW	2 cut(s)	493, 924
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	3 cut(s)	183, 522, 1347
Tru9I	TTAA	3 cut(s)	183, 522, 1347
TseFI	GTSAC	3 cut(s)	110, 198, 367
TseI	GCWGC	2 cut(s)	998, 1001
Tsp45I	GTSAC	3 cut(s)	110, 198, 367
TspDTI	ATGAA	7 cut(s)	131, 168, 426, 670, 818, 822, 1098
TspGWI	ACGGA	1 cut(s)	336
Van91I	CCANNNNNTGG	1 cut(s)	231
VpaK11BI	GGWCC	2 cut(s)	343, 1088
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	618
XceI	RCATGY	1 cut(s)	925
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 228
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	1293
XspI	CTAG	8 cut(s)	144, 213, 378, 450, 1235, 1428, 1466, 1526
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.