Rh3DG060500

alpha-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
4086772 .. 4090552
3781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG060500.1

Sequence Viewer

Length: 1467 bp
ATGGAGACTATAACATGGAGAAAACGAAGACTAAGAACTGGAACAAGAGGAAGGCAAAACTCTATCCACAATGAAGATGGATCAAGGTGGGTTGATCTTCTTAATCAGAGGGTATGGTCACAAGAACTTGCTAGCACCCCACCCAGAGGTTGGAACTCCTATAACGCAATCAGCTGGACTATTACAGAGGAAGAGTTCTTGCAAAATGCTGAAATCATCTCCAAGAAGTTACTTCCTCATGGATATGAGTATGTAGTTGTGGACCATCTGTGGTATAGAAGAAATGTGACCGGCGCTAGTGTAGACTCTCTTGGAGTTGATGTAATTGATGAATGGGGGAGACCGATGCCTGACCCAGATAGGTGGCCTAGCTCCAGAGGTGGGAAAGGGTTTACTGAAGTGGCAGACAGAGTACATAAAATGGGTTTGAAGTTTGGAATTAATGTTATGAGAGGAATAAACACACAAGCTGTAAAAGCCAATACCCATATCTTGGATCCTCTCTCGGGGAATGTTTATGATTATTTCAATGGAAAAATTTGGACTGCACAAGATATAGGGATCAAGGAGAGGACTTGTGCTCGGATGCAAAATGGTTTCATGAGTGTGGATACAACCTTGCAAGCTGGAAGGTTCTTCTTGGCAGACCTCTATCAACTGTATGCCAATTGGGGTGTTGATTTTGTGAAACAGGACTGCGTGTTTGGTAATGACTTGGATATGAATGAAATATATCATGCATCATGGCTTTTGAGGAATGATAGACCTATATTGTATTCTGTATCTCCTGGAATTGGAGCAACACCCATGATGGCCAAAAGTGTAAGTGGTGTAGTGAACATGTACAGTATAAACGGGCATAACTGGGATGACTGGGAAGATGTTGTTACCTGTTTTGATGTTGCCAGGGATTTTGCTGCTGCTAATATGATTGGAGCAAACAGCTCGTGGCCTGACTTAGATATGCTTCCCCTGGGATGGCTTAGTGATGCAGGTTCAAATGAAGGTCCACACAGAACAACTAACCTCACATTAGAGGAGCAAAGAACTATGATGACCTTGTGGTGCATGGCCAAGTCTCCTCTCATGTTTGGAGGAGATCTGAGAAAGCTTGATGATACAACTTACAGTATCCTAACAAATCCTACCTTGCTAGAGGTCAATTCTTTTAGCTCAAATAATAAGGAGTTTCCATACATAAAATCTGAAGGACTTCGCTCTTGGGTTGCAACTGGAAGACAACGAGAAATATATGTTGCTTTATTTAATCTGAACTCAAAGAAGATTACTATAACCGCACAAAAATCGGACTTGGCCAAGGCACTTCCTGGGACAACATTGACTACTAGAGCTTCCTGCAAAGGCAAAGAAGTATGGAGCCGACTAGACTTGGGGATTATAGACCACTCCATATCCATTGCTGTAGAAACCCATGGGACTGCACTAGTTGTACTACATTGCAATTAG

Protein Analysis

488

Amino Acids

55.06

Weight (kDa)

6.28

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Melibiase_2 PF16499 219 - 388 8.9e-10 Alpha galactosidase A
Melibiase_C PF17801 404 - 484 1.2e-06 Alpha galactosidase C-terminal beta sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 983
AccB7I CCANNNNNTGG 2 cut(s) 150, 493
AccI GTMKAC 1 cut(s) 303
AciI CCGC 1 cut(s) 1296
AclWI GGATC 4 cut(s) 88, 491, 504, 569
AcoI YGGCCR 3 cut(s) 813, 1071, 1314
AcsI RAATTY 1 cut(s) 537
AcuI CTGAAG 2 cut(s) 417, 1227
AfaI GTAC 3 cut(s) 414, 845, 1452
AfiI CCNNNNNNNGG 7 cut(s) 146, 150, 381, 493, 506, 794, 978
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 3 cut(s) 430, 529, 999
AhlI ACTAGT 1 cut(s) 1444
AjnI CCWGG 4 cut(s) 787, 905, 972, 1327
AluBI AGCT 8 cut(s) 174, 372, 470, 626, 945, 1111, 1173, 1352
AluI AGCT 8 cut(s) 174, 372, 470, 626, 945, 1111, 1173, 1352
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 2 cut(s) 334, 1083
AlwI GGATC 4 cut(s) 88, 491, 504, 569
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 5 cut(s) 365, 813, 950, 1071, 1314
ApeKI GCWGC 2 cut(s) 917, 920
ApoI RAATTY 1 cut(s) 537
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AseI ATTAAT 1 cut(s) 441
Asp700I GAANNNNTTC 1 cut(s) 1212
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 262, 1007
AsuNHI GCTAGC 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 2 cut(s) 262, 1007
BalI TGGCCA 3 cut(s) 815, 1073, 1316
BamHI GGATCC 1 cut(s) 496
BauI CACGAG 1 cut(s) 946
BbsI GAAGAC 2 cut(s) 34, 1243
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 2 cut(s) 904, 907
BccI CCATC 4 cut(s) 71, 273, 805, 972
BcgI CGANNNNNNTGC 4 cut(s) 927, 961, 1287, 1321
BciT130I CCWGG 4 cut(s) 789, 907, 974, 1329
BciVI GTATCC 2 cut(s) 604, 1142
BcoDI GTCTC 2 cut(s) 334, 1083
BcuI ACTAGT 1 cut(s) 1444
BfaI CTAG 7 cut(s) 132, 297, 369, 1154, 1347, 1385, 1445
BfmI CTRYAG 1 cut(s) 1422
BfoI RGCGCY 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 983
BfuI GTATCC 2 cut(s) 604, 1142
BglII AGATCT 1 cut(s) 1099
BisI GCNGC 2 cut(s) 918, 921
BlsI GCNGC 2 cut(s) 919, 922
Bme1390I CCNGG 4 cut(s) 789, 907, 974, 1329
Bme18I GGWCC 2 cut(s) 262, 1007
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 2 cut(s) 262, 1007
BmiI GGNNCC 2 cut(s) 498, 1379
BmrFI CCNGG 4 cut(s) 789, 907, 974, 1329
BmrI ACTGGG 2 cut(s) 874, 883
BmsI GCATC 4 cut(s) 336, 576, 749, 979
BmtI GCTAGC 1 cut(s) 135
BmuI ACTGGG 2 cut(s) 874, 883
BpiI GAAGAC 2 cut(s) 34, 1243
BpmI CTGGAG 1 cut(s) 358
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 6 cut(s) 906, 972, 973, 1317, 1328, 1432
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 7 cut(s) 146, 150, 381, 493, 506, 794, 978
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 4 cut(s) 43, 869, 878, 1237
Bse3DI GCAATG 2 cut(s) 1416, 1456
BseBI CCWGG 4 cut(s) 789, 907, 974, 1329
BseDI CCNNGG 6 cut(s) 906, 972, 973, 1317, 1328, 1432
BseGI GGATG 3 cut(s) 591, 874, 983
BseLI CCNNNNNNNGG 7 cut(s) 146, 150, 381, 493, 506, 794, 978
BseMI GCAATG 2 cut(s) 1416, 1456
BseMII CTCAG 1 cut(s) 1094
BseNI ACTGG 4 cut(s) 43, 869, 878, 1237
BseRI GAGGAG 3 cut(s) 1052, 1071, 1110
BseXI GCAGC 2 cut(s) 904, 907
BsgI GTGCAG 2 cut(s) 531, 1425
BshFI GGCC 5 cut(s) 367, 815, 952, 1073, 1316
BsiHKAI GWGCWC 1 cut(s) 583
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 2 cut(s) 1345, 1450
BslI CCNNNNNNNGG 7 cut(s) 146, 150, 381, 493, 506, 794, 978
BsmAI GTCTC 2 cut(s) 334, 1083
BsmFI GGGAC 2 cut(s) 1345, 1450
BsnI GGCC 5 cut(s) 367, 815, 952, 1073, 1316
Bso31I GGTCTC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 583
Bsp1407I TGTACA 1 cut(s) 843
Bsp143I GATC 5 cut(s) 80, 94, 496, 561, 1099
Bsp19I CCATGG 1 cut(s) 1432
BspACI CCGC 1 cut(s) 1296
BspANI GGCC 5 cut(s) 367, 815, 952, 1073, 1316
BspCNI CTCAG 1 cut(s) 1095
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 498, 1379
BspMI ACCTGC 1 cut(s) 983
BspOI GCTAGC 1 cut(s) 135
BspPI GGATC 4 cut(s) 88, 491, 504, 569
BspTNI GGTCTC 1 cut(s) 334
BsrDI GCAATG 2 cut(s) 1416, 1456
BsrFI RCCGGY 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 843
BsrI ACTGG 4 cut(s) 43, 869, 878, 1237
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 6 cut(s) 906, 972, 973, 1317, 1328, 1432
BssMI GATC 5 cut(s) 80, 94, 496, 561, 1099
BssSI CACGAG 1 cut(s) 946
BssT1I CCWWGG 2 cut(s) 1317, 1432
Bst2BI CACGAG 1 cut(s) 946
Bst2UI CCWGG 4 cut(s) 789, 907, 974, 1329
Bst4CI ACNGT 3 cut(s) 660, 848, 1130
Bst6I CTCTTC 1 cut(s) 186
BstAUI TGTACA 1 cut(s) 843
BstC8I GCNNGC 2 cut(s) 133, 624
BstDEI CTNAG 4 cut(s) 32, 958, 983, 1103
BstDSI CCRYGG 1 cut(s) 1432
BstF5I GGATG 3 cut(s) 591, 874, 983
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 5 cut(s) 83, 97, 499, 564, 1102
BstMAI GTCTC 2 cut(s) 334, 1083
BstMBI GATC 5 cut(s) 80, 94, 496, 561, 1099
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 4 cut(s) 789, 907, 974, 1329
BstNSI RCATGY 1 cut(s) 844
BstSCI CCNGG 4 cut(s) 787, 905, 972, 1327
BstSFI CTRYAG 1 cut(s) 1422
BstV1I GCAGC 2 cut(s) 904, 907
BstV2I GAAGAC 2 cut(s) 34, 1243
BstX2I RGATCY 2 cut(s) 496, 1099
BstXI CCANNNNNNTGG 1 cut(s) 363
BstYI RGATCY 2 cut(s) 496, 1099
BsuI GTATCC 2 cut(s) 604, 1142
BsuRI GGCC 5 cut(s) 367, 815, 952, 1073, 1316
BtgI CCRYGG 1 cut(s) 1432
BtsCI GGATG 3 cut(s) 591, 874, 983
BveI ACCTGC 1 cut(s) 983
Cac8I GCNNGC 2 cut(s) 133, 624
CciI TCATGA 1 cut(s) 600
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 262, 1007
Csp6I GTAC 3 cut(s) 413, 844, 1451
CviQI GTAC 3 cut(s) 413, 844, 1451
DdeI CTNAG 4 cut(s) 32, 958, 983, 1103
DpnI GATC 5 cut(s) 82, 96, 498, 563, 1101
DpnII GATC 5 cut(s) 80, 94, 496, 561, 1099
EaeI YGGCCR 3 cut(s) 813, 1071, 1314
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 2 cut(s) 1317, 1432
Eco31I GGTCTC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 262, 1007
Eco57I CTGAAG 2 cut(s) 417, 1227
Eco88I CYCGRG 1 cut(s) 505
EcoRII CCWGG 4 cut(s) 787, 905, 972, 1327
EcoT14I CCWWGG 2 cut(s) 1317, 1432
EcoT22I ATGCAT 1 cut(s) 742
ErhI CCWWGG 2 cut(s) 1317, 1432
FaqI GGGAC 2 cut(s) 1345, 1450
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 918, 921
FokI GGATG 3 cut(s) 598, 881, 990
Fsp4HI GCNGC 2 cut(s) 918, 921
FspBI CTAG 7 cut(s) 132, 297, 369, 1154, 1347, 1385, 1445
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 918, 921
GsuI CTGGAG 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 5 cut(s) 367, 815, 952, 1073, 1316
HapII CCGG 1 cut(s) 291
HhaI GCGC 1 cut(s) 296
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 1109
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 291
Hpy166II GTNNAC 5 cut(s) 262, 304, 393, 838, 1010
Hpy188I TCNGA 6 cut(s) 108, 585, 1104, 1207, 1272, 1309
Hpy188III TCNNGA 2 cut(s) 375, 601
Hpy8I GTNNAC 5 cut(s) 262, 304, 393, 838, 1010
HpyAV CCTTC 4 cut(s) 45, 624, 998, 1202
HpyCH4III ACNGT 3 cut(s) 660, 848, 1130
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 4 cut(s) 32, 958, 983, 1103
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 5 cut(s) 80, 94, 496, 561, 1099
LmnI GCTCC 5 cut(s) 377, 797, 935, 1039, 1377
Lsp1109I GCAGC 2 cut(s) 904, 907
LweI GCATC 4 cut(s) 336, 576, 749, 979
MaeI CTAG 7 cut(s) 132, 297, 369, 1154, 1347, 1385, 1445
MaeIII GTNAC 4 cut(s) 117, 228, 286, 886
MalI GATC 5 cut(s) 82, 96, 498, 563, 1101
MboI GATC 5 cut(s) 80, 94, 496, 561, 1099
MboII GAAGA 9 cut(s) 39, 86, 89, 203, 291, 628, 890, 1248, 1294
MfeI CAATTG 1 cut(s) 667
MflI RGATCY 2 cut(s) 496, 1099
MhlI GDGCHC 1 cut(s) 583
MlsI TGGCCA 3 cut(s) 815, 1073, 1316
MluCI AATT 7 cut(s) 324, 438, 537, 667, 792, 1162, 1462
MluNI TGGCCA 3 cut(s) 815, 1073, 1316
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 131
Mox20I TGGCCA 3 cut(s) 815, 1073, 1316
Mph1103I ATGCAT 1 cut(s) 742
MroXI GAANNNNTTC 1 cut(s) 1212
MscI TGGCCA 3 cut(s) 815, 1073, 1316
MseI TTAA 3 cut(s) 102, 441, 1266
MslI CAYNNNNRTG 2 cut(s) 243, 605
Msp20I TGGCCA 3 cut(s) 815, 1073, 1316
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 4 cut(s) 789, 907, 974, 1329
MunI CAATTG 1 cut(s) 667
MvaI CCWGG 4 cut(s) 789, 907, 974, 1329
MwoI GCNNNNNNNGC 1 cut(s) 476
NcoI CCATGG 1 cut(s) 1432
NdeII GATC 5 cut(s) 80, 94, 496, 561, 1099
NheI GCTAGC 1 cut(s) 131
NlaIV GGNNCC 2 cut(s) 498, 1379
NmuCI GTSAC 2 cut(s) 117, 286
NsiI ATGCAT 1 cut(s) 742
NspI RCATGY 1 cut(s) 844
PagI TCATGA 1 cut(s) 600
PasI CCCWGGG 1 cut(s) 973
PciI ACATGT 1 cut(s) 840
PdmI GAANNNNTTC 1 cut(s) 1212
PflMI CCANNNNNTGG 2 cut(s) 150, 493
PfoI TCCNGGA 1 cut(s) 787
PkrI GCNGC 2 cut(s) 919, 922
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PscI ACATGT 1 cut(s) 840
PshBI ATTAAT 1 cut(s) 441
Psp6I CCWGG 4 cut(s) 787, 905, 972, 1327
PspGI CCWGG 4 cut(s) 787, 905, 972, 1327
PspN4I GGNNCC 2 cut(s) 498, 1379
PspPI GGNCC 2 cut(s) 262, 1007
PsuI RGATCY 2 cut(s) 496, 1099
PvuII CAGCTG 1 cut(s) 174
RsaI GTAC 3 cut(s) 414, 845, 1452
RsaNI GTAC 3 cut(s) 413, 844, 1451
RseI CAYNNNNRTG 2 cut(s) 243, 605
SaqAI TTAA 3 cut(s) 102, 441, 1266
SatI GCNGC 2 cut(s) 918, 921
Sau3AI GATC 5 cut(s) 80, 94, 496, 561, 1099
Sau96I GGNCC 2 cut(s) 262, 1007
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 4 cut(s) 789, 907, 974, 1329
SduI GDGCHC 1 cut(s) 583
SfaNI GCATC 4 cut(s) 336, 576, 749, 979
SfcI CTRYAG 1 cut(s) 1422
SinI GGWCC 2 cut(s) 262, 1007
SmiMI CAYNNNNRTG 2 cut(s) 243, 605
SpeI ACTAGT 1 cut(s) 1444
Sse9I AATT 7 cut(s) 324, 438, 537, 667, 792, 1162, 1462
SsiI CCGC 1 cut(s) 1296
SspMI CTAG 7 cut(s) 132, 297, 369, 1154, 1347, 1385, 1445
StyD4I CCNGG 4 cut(s) 787, 905, 972, 1327
StyI CCWWGG 2 cut(s) 1317, 1432
TaaI ACNGT 3 cut(s) 660, 848, 1130
TaqII GACCGA 1 cut(s) 358
TasI AATT 7 cut(s) 324, 438, 537, 667, 792, 1162, 1462
TatI WGTACW 3 cut(s) 412, 843, 1450
Tru1I TTAA 3 cut(s) 102, 441, 1266
Tru9I TTAA 3 cut(s) 102, 441, 1266
TseFI GTSAC 2 cut(s) 117, 286
TseI GCWGC 2 cut(s) 917, 920
Tsp45I GTSAC 2 cut(s) 117, 286
TspDTI ATGAA 6 cut(s) 87, 345, 589, 737, 741, 1017
Van91I CCANNNNNTGG 2 cut(s) 150, 493
VpaK11BI GGWCC 2 cut(s) 262, 1007
VspI ATTAAT 1 cut(s) 441
XapI RAATTY 1 cut(s) 537
XceI RCATGY 1 cut(s) 844
XcmI CCANNNNNNNNNTGG 2 cut(s) 74, 147
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 1212
XspI CTAG 7 cut(s) 132, 297, 369, 1154, 1347, 1385, 1445
Zsp2I ATGCAT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.