Rh3BG060100

alpha-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
4088817 .. 4092622
3806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG060100.1

Sequence Viewer

Length: 1461 bp
ATGGAGACTATAACATGGAGAAAACGAAGACTAAGAACTGGAACAAGGCAAAACTCTATCCACAATGAAGATGGATCAAGGTGGGTTGATCTTCTTAATCAGAGGGTATGGTCACAAGAACTTGCTAGCACCCCACCCAGAGGTTGGAACTCCTATAACGCAATCAGCTGGACTATTACAGAGGAAGAGTTCTTGCAAAATGCTGAAATCATCTCCAAGAAGTTACTTCCTCATGGATATGAGTATGTAGTTGTGGACCATCTGTGGTATAGGAGAAATGTGACCTGCGCTAGTGTAGACTCTCTTGGAGTTGATGTAATTGATGAATGGGGGAGACCGATGCCTGACCCAGATAGGTGGCCTAGCTCCAGAGGTGGGAAAGGGTTTACTGAAGTGGCAGACAGAGTACATAAAATGGGTTTGAAGTTTGGAATTAATGTTATGAGAGGAATAAACACACAAGCTGTAAAAGCCAATACCCATATCTTGGATCCTCTCTCGGGGAATGTTTATGATTATTTCAATGGAAAAATTTGGACTGCACAAGATATAGGGATCAAGGAGAGGACTTGTGCTCGGATGCAAAATGGTTTCATGAGTGTGGATACAACCTTGCAAGCTGGAAGGTTCTTCTTGGCAGACCTCTATCAACTGTATGCCAATTGGGGTGTTGATTTTGTGAAACAGGACTGCGTGTTTGGTAATGACTTGGATATGAATGAAATATATCATGCATCATGGCTTTTGAGGAACGATAGACCTATATTGTATTCTGTATCTCCTGGAATTGGAGCAACACCCATGATGGCCAAAAGTGTAAGTGGTGTAGTGAACATGTACAGTATAAACGGGCATAACTGGGATGACTGGGAAGATGTTGTTGCCCGTTTTGATGTTGCCAGGGATTTTGCTGCTGCTAATATGATTGGAGCAAACAGCTCGTGGCCTGACTTAGATATGCTTCCCCTGGGATGGCTTAGTGATGCAGGTTCAAATGAAGGTCCACACAGAACAACTAACCTCACATTAGAGGAGCAAAGAACTATGATGACCTTGTGGTGCATGGCCAAGTCTCCTCTCATGTTTGGAGGAGATCTGAGAAAGCTTGATGATACAACTTACAGTGTCCTAACAAATCCTACCTTGCTAGAGATCAATTCTTTTAGCTCAAATAATAAGGAGTTTCCATACATAAAATCTGAAGGACTTCGCTCTTGGGTTGCAACTGGAAGACAACGAGAAATATACGTTGCTTTATTTAATCTGAACTCAAAGAAGACTACTATAACCGCACAAAAATCAGACTTAGCCAGGGCACTTCCTGGGACAACATTGACTACTAGAGCTTCCTGCAAAGGCAAAGAAGTTTGGAGCCGACTAGACTTGGGGATTATAGACCACTCCATATCCATTGCTGTAGAAACCCATGGGACTGCACTAGTTGTCCTACATTGCAATTAG

Protein Analysis

486

Amino Acids

54.94

Weight (kDa)

6.28

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Melibiase_2 PF16499 217 - 386 1.5e-09 Alpha galactosidase A
Melibiase_C PF17801 402 - 482 1.9e-06 Alpha galactosidase C-terminal beta sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 293, 977
AccB7I CCANNNNNTGG 2 cut(s) 144, 487
AccI GTMKAC 1 cut(s) 297
AciI CCGC 1 cut(s) 1290
AclWI GGATC 4 cut(s) 82, 485, 498, 563
AcoI YGGCCR 2 cut(s) 807, 1065
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 2 cut(s) 411, 1221
AfaI GTAC 2 cut(s) 408, 839
AfiI CCNNNNNNNGG 7 cut(s) 140, 144, 375, 487, 500, 788, 972
AflIII ACRYGT 1 cut(s) 834
AgsI TTSAA 3 cut(s) 424, 523, 993
AhlI ACTAGT 1 cut(s) 1438
AjnI CCWGG 5 cut(s) 781, 899, 966, 1310, 1321
AluBI AGCT 8 cut(s) 168, 366, 464, 620, 939, 1105, 1167, 1346
AluI AGCT 8 cut(s) 168, 366, 464, 620, 939, 1105, 1167, 1346
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 328, 1077
AlwI GGATC 4 cut(s) 82, 485, 498, 563
Ama87I CYCGRG 1 cut(s) 499
AoxI GGCC 4 cut(s) 359, 807, 944, 1065
ApeKI GCWGC 2 cut(s) 911, 914
ApoI RAATTY 1 cut(s) 531
ArsI GACNNNNNNTTYG 2 cut(s) 680, 712
AseI ATTAAT 1 cut(s) 435
Asp700I GAANNNNTTC 1 cut(s) 1206
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 256, 1001
AsuNHI GCTAGC 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 499
AvaII GGWCC 2 cut(s) 256, 1001
BaeGI GKGCMC 1 cut(s) 1318
BalI TGGCCA 2 cut(s) 809, 1067
BamHI GGATCC 1 cut(s) 490
BauI CACGAG 1 cut(s) 940
BbsI GAAGAC 3 cut(s) 34, 1237, 1283
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 2 cut(s) 898, 901
BccI CCATC 4 cut(s) 65, 267, 799, 966
BcgI CGANNNNNNTGC 2 cut(s) 921, 955
BciT130I CCWGG 5 cut(s) 783, 901, 968, 1312, 1323
BciVI GTATCC 1 cut(s) 598
BcoDI GTCTC 2 cut(s) 328, 1077
BcuI ACTAGT 1 cut(s) 1438
BfaI CTAG 7 cut(s) 126, 291, 363, 1148, 1341, 1379, 1439
BfmI CTRYAG 1 cut(s) 1416
BfuAI ACCTGC 2 cut(s) 293, 977
BfuI GTATCC 1 cut(s) 598
BglII AGATCT 1 cut(s) 1093
BisI GCNGC 2 cut(s) 912, 915
BlsI GCNGC 2 cut(s) 913, 916
Bme1390I CCNGG 5 cut(s) 783, 901, 968, 1312, 1323
Bme18I GGWCC 2 cut(s) 256, 1001
BmeT110I CYCGRG 1 cut(s) 499
BmgT120I GGNCC 2 cut(s) 256, 1001
BmiI GGNNCC 2 cut(s) 492, 1373
BmrFI CCNGG 5 cut(s) 783, 901, 968, 1312, 1323
BmrI ACTGGG 2 cut(s) 868, 877
BmsI GCATC 4 cut(s) 330, 570, 743, 973
BmtI GCTAGC 1 cut(s) 129
BmuI ACTGGG 2 cut(s) 868, 877
BpiI GAAGAC 3 cut(s) 34, 1237, 1283
BpmI CTGGAG 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 6 cut(s) 900, 966, 967, 1311, 1322, 1426
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 7 cut(s) 140, 144, 375, 487, 500, 788, 972
Bse1I ACTGG 4 cut(s) 43, 863, 872, 1231
Bse3DI GCAATG 2 cut(s) 1410, 1450
BseBI CCWGG 5 cut(s) 783, 901, 968, 1312, 1323
BseDI CCNNGG 6 cut(s) 900, 966, 967, 1311, 1322, 1426
BseGI GGATG 3 cut(s) 585, 868, 977
BseLI CCNNNNNNNGG 7 cut(s) 140, 144, 375, 487, 500, 788, 972
BseMI GCAATG 2 cut(s) 1410, 1450
BseMII CTCAG 1 cut(s) 1088
BseNI ACTGG 4 cut(s) 43, 863, 872, 1231
BseRI GAGGAG 3 cut(s) 1046, 1065, 1104
BseSI GKGCMC 1 cut(s) 1318
BseXI GCAGC 2 cut(s) 898, 901
BsgI GTGCAG 2 cut(s) 525, 1419
BshFI GGCC 4 cut(s) 361, 809, 946, 1067
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 499
BslFI GGGAC 2 cut(s) 1339, 1444
BslI CCNNNNNNNGG 7 cut(s) 140, 144, 375, 487, 500, 788, 972
BsmAI GTCTC 2 cut(s) 328, 1077
BsmFI GGGAC 2 cut(s) 1339, 1444
BsnI GGCC 4 cut(s) 361, 809, 946, 1067
Bso31I GGTCTC 1 cut(s) 328
BsoBI CYCGRG 1 cut(s) 499
Bsp1286I GDGCHC 2 cut(s) 577, 1318
Bsp1407I TGTACA 1 cut(s) 837
Bsp143I GATC 6 cut(s) 74, 88, 490, 555, 1093, 1152
Bsp19I CCATGG 1 cut(s) 1426
BspACI CCGC 1 cut(s) 1290
BspANI GGCC 4 cut(s) 361, 809, 946, 1067
BspCNI CTCAG 1 cut(s) 1089
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 2 cut(s) 492, 1373
BspMI ACCTGC 2 cut(s) 293, 977
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 4 cut(s) 82, 485, 498, 563
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 2 cut(s) 1410, 1450
BsrGI TGTACA 1 cut(s) 837
BsrI ACTGG 4 cut(s) 43, 863, 872, 1231
BssECI CCNNGG 6 cut(s) 900, 966, 967, 1311, 1322, 1426
BssMI GATC 6 cut(s) 74, 88, 490, 555, 1093, 1152
BssSI CACGAG 1 cut(s) 940
BssT1I CCWWGG 1 cut(s) 1426
Bst2BI CACGAG 1 cut(s) 940
Bst2UI CCWGG 5 cut(s) 783, 901, 968, 1312, 1323
Bst4CI ACNGT 3 cut(s) 654, 842, 1124
Bst6I CTCTTC 1 cut(s) 180
BstAUI TGTACA 1 cut(s) 837
BstC8I GCNNGC 2 cut(s) 127, 618
BstDEI CTNAG 5 cut(s) 32, 952, 977, 1097, 1306
BstDSI CCRYGG 1 cut(s) 1426
BstF5I GGATG 3 cut(s) 585, 868, 977
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 6 cut(s) 77, 91, 493, 558, 1096, 1155
BstMAI GTCTC 2 cut(s) 328, 1077
BstMBI GATC 6 cut(s) 74, 88, 490, 555, 1093, 1152
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNI CCWGG 5 cut(s) 783, 901, 968, 1312, 1323
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 5 cut(s) 781, 899, 966, 1310, 1321
BstSFI CTRYAG 1 cut(s) 1416
BstSLI GKGCMC 1 cut(s) 1318
BstV1I GCAGC 2 cut(s) 898, 901
BstV2I GAAGAC 3 cut(s) 34, 1237, 1283
BstX2I RGATCY 2 cut(s) 490, 1093
BstXI CCANNNNNNTGG 1 cut(s) 357
BstYI RGATCY 2 cut(s) 490, 1093
BsuI GTATCC 1 cut(s) 598
BsuRI GGCC 4 cut(s) 361, 809, 946, 1067
BtgI CCRYGG 1 cut(s) 1426
BtsCI GGATG 3 cut(s) 585, 868, 977
BtsIMutI CAGTG 1 cut(s) 1129
BveI ACCTGC 2 cut(s) 293, 977
Cac8I GCNNGC 2 cut(s) 127, 618
CciI TCATGA 1 cut(s) 594
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 256, 1001
Csp6I GTAC 2 cut(s) 407, 838
CviQI GTAC 2 cut(s) 407, 838
DdeI CTNAG 5 cut(s) 32, 952, 977, 1097, 1306
DpnI GATC 6 cut(s) 76, 90, 492, 557, 1095, 1154
DpnII GATC 6 cut(s) 74, 88, 490, 555, 1093, 1152
EaeI YGGCCR 2 cut(s) 807, 1065
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 1426
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 2 cut(s) 256, 1001
Eco57I CTGAAG 2 cut(s) 411, 1221
Eco88I CYCGRG 1 cut(s) 499
EcoRII CCWGG 5 cut(s) 781, 899, 966, 1310, 1321
EcoT14I CCWWGG 1 cut(s) 1426
EcoT22I ATGCAT 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 1426
FaqI GGGAC 2 cut(s) 1339, 1444
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 912, 915
FokI GGATG 3 cut(s) 592, 875, 984
Fsp4HI GCNGC 2 cut(s) 912, 915
FspBI CTAG 7 cut(s) 126, 291, 363, 1148, 1341, 1379, 1439
GlaI GCGC 1 cut(s) 289
GluI GCNGC 2 cut(s) 912, 915
GsuI CTGGAG 1 cut(s) 352
HaeIII GGCC 4 cut(s) 361, 809, 946, 1067
HhaI GCGC 1 cut(s) 290
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 1 cut(s) 299
Hpy166II GTNNAC 5 cut(s) 256, 298, 387, 832, 1004
Hpy188I TCNGA 6 cut(s) 102, 579, 1098, 1201, 1266, 1303
Hpy188III TCNNGA 2 cut(s) 369, 595
Hpy8I GTNNAC 5 cut(s) 256, 298, 387, 832, 1004
HpyAV CCTTC 3 cut(s) 618, 992, 1196
HpyCH4III ACNGT 3 cut(s) 654, 842, 1124
HpyCH4IV ACGT 1 cut(s) 1248
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 5 cut(s) 32, 952, 977, 1097, 1306
HpySE526I ACGT 1 cut(s) 1248
HspAI GCGC 1 cut(s) 288
Kzo9I GATC 6 cut(s) 74, 88, 490, 555, 1093, 1152
LmnI GCTCC 5 cut(s) 371, 791, 929, 1033, 1371
Lsp1109I GCAGC 2 cut(s) 898, 901
LweI GCATC 4 cut(s) 330, 570, 743, 973
MaeI CTAG 7 cut(s) 126, 291, 363, 1148, 1341, 1379, 1439
MaeII ACGT 1 cut(s) 1248
MaeIII GTNAC 3 cut(s) 111, 222, 280
MalI GATC 6 cut(s) 76, 90, 492, 557, 1095, 1154
MboI GATC 6 cut(s) 74, 88, 490, 555, 1093, 1152
MboII GAAGA 8 cut(s) 39, 80, 83, 197, 622, 884, 1242, 1288
MfeI CAATTG 1 cut(s) 661
MflI RGATCY 2 cut(s) 490, 1093
MhlI GDGCHC 2 cut(s) 577, 1318
MlsI TGGCCA 2 cut(s) 809, 1067
MluCI AATT 7 cut(s) 318, 432, 531, 661, 786, 1156, 1456
MluNI TGGCCA 2 cut(s) 809, 1067
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 125
Mox20I TGGCCA 2 cut(s) 809, 1067
Mph1103I ATGCAT 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 1206
MscI TGGCCA 2 cut(s) 809, 1067
MseI TTAA 3 cut(s) 96, 435, 1260
MslI CAYNNNNRTG 2 cut(s) 237, 599
Msp20I TGGCCA 2 cut(s) 809, 1067
MspA1I CMGCKG 1 cut(s) 168
MspR9I CCNGG 5 cut(s) 783, 901, 968, 1312, 1323
MunI CAATTG 1 cut(s) 661
MvaI CCWGG 5 cut(s) 783, 901, 968, 1312, 1323
MwoI GCNNNNNNNGC 1 cut(s) 470
NcoI CCATGG 1 cut(s) 1426
NdeII GATC 6 cut(s) 74, 88, 490, 555, 1093, 1152
NheI GCTAGC 1 cut(s) 125
NlaIV GGNNCC 2 cut(s) 492, 1373
NmuCI GTSAC 2 cut(s) 111, 280
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 1 cut(s) 838
PagI TCATGA 1 cut(s) 594
PasI CCCWGGG 1 cut(s) 967
PciI ACATGT 1 cut(s) 834
PdmI GAANNNNTTC 1 cut(s) 1206
PflMI CCANNNNNTGG 2 cut(s) 144, 487
PfoI TCCNGGA 1 cut(s) 781
PkrI GCNGC 2 cut(s) 913, 916
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PscI ACATGT 1 cut(s) 834
PshBI ATTAAT 1 cut(s) 435
Psp6I CCWGG 5 cut(s) 781, 899, 966, 1310, 1321
PspGI CCWGG 5 cut(s) 781, 899, 966, 1310, 1321
PspN4I GGNNCC 2 cut(s) 492, 1373
PspPI GGNCC 2 cut(s) 256, 1001
PsuI RGATCY 2 cut(s) 490, 1093
PvuII CAGCTG 1 cut(s) 168
RsaI GTAC 2 cut(s) 408, 839
RsaNI GTAC 2 cut(s) 407, 838
RseI CAYNNNNRTG 2 cut(s) 237, 599
SaqAI TTAA 3 cut(s) 96, 435, 1260
SatI GCNGC 2 cut(s) 912, 915
Sau3AI GATC 6 cut(s) 74, 88, 490, 555, 1093, 1152
Sau96I GGNCC 2 cut(s) 256, 1001
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 5 cut(s) 783, 901, 968, 1312, 1323
SduI GDGCHC 2 cut(s) 577, 1318
SfaNI GCATC 4 cut(s) 330, 570, 743, 973
SfcI CTRYAG 1 cut(s) 1416
SinI GGWCC 2 cut(s) 256, 1001
SmiMI CAYNNNNRTG 2 cut(s) 237, 599
SpeI ACTAGT 1 cut(s) 1438
Sse9I AATT 7 cut(s) 318, 432, 531, 661, 786, 1156, 1456
SsiI CCGC 1 cut(s) 1290
SspMI CTAG 7 cut(s) 126, 291, 363, 1148, 1341, 1379, 1439
StyD4I CCNGG 5 cut(s) 781, 899, 966, 1310, 1321
StyI CCWWGG 1 cut(s) 1426
TaaI ACNGT 3 cut(s) 654, 842, 1124
TaiI ACGT 1 cut(s) 1251
TaqII GACCGA 1 cut(s) 352
TasI AATT 7 cut(s) 318, 432, 531, 661, 786, 1156, 1456
TatI WGTACW 2 cut(s) 406, 837
Tru1I TTAA 3 cut(s) 96, 435, 1260
Tru9I TTAA 3 cut(s) 96, 435, 1260
TscAI CASTG 1 cut(s) 1129
TseFI GTSAC 2 cut(s) 111, 280
TseI GCWGC 2 cut(s) 911, 914
Tsp45I GTSAC 2 cut(s) 111, 280
TspDTI ATGAA 6 cut(s) 81, 339, 583, 731, 735, 1011
TspRI CASTG 1 cut(s) 1129
Van91I CCANNNNNTGG 2 cut(s) 144, 487
VpaK11BI GGWCC 2 cut(s) 256, 1001
VspI ATTAAT 1 cut(s) 435
XapI RAATTY 1 cut(s) 531
XceI RCATGY 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 2 cut(s) 68, 141
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 1206
XspI CTAG 7 cut(s) 126, 291, 363, 1148, 1341, 1379, 1439
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.