Rroxscaffold_165G00437170

alpha-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000165
Physical Location & Seq
Forward (+)
271092 .. 275486
4395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_165G00437170.1

Sequence Viewer

Length: 1467 bp
ATGGAGACTATAACATGGAGAAAACGAAGACTAAGAACCGGAACAAGAGGACGGCAAAACTCTATCCACAATGAAGATGGATCAAGGTGGGTTGATCTTCTTAATCAGAGGGTATGGTCACAAGAACTTGCTAGCACCCCACCCAGAGGTTGGAACTCCTATAACGCAATCAGCTGGACTATTACAGAGGAAGAGTTCTTGCAAAATGCTGAAATCGTCTCCAAGAAGTTACTTCCTCATGGATATGAGTATGTAGTTGTGGACCATCTGTGGTATAGGAGAAATGTGACTGGCGCTAGTGTAGACTCTCTTGGAGTTGATGTAATTGATGAATGGGGGAGACCGATGCCTGACCCAGATAGGTGGCCTAGCTCCAGAGGTGGGAAAGGGTTTACTGAAGTGGCTGACAGAGTACATAAAATGGGTTTGAAGTTTGGAATTAATGTTATGAGAGGAATAAACACACAAGCTGTAAAAGCCAATACCCATATCTTGGATCCTCTCTCAGGGAATGTTTATGATTATTTCAACGGAAAAATTTGGACTGCACTAGATATAGGGATCAAGGAGAGGACTTGTGCTCGGATGCAAAATGGTTTCATGAGTGTGAATACAACCTTGCAAGCTGGAAGGTTTTTCTTGGCAGACCTCTATCAACTGTATGCCAATTGGGGTGTTGATTTTGTGAAACAGGACTGCGTGTTTGGTAATGACTTGGACATGAATGAAATATATCATGCATCATGGCTTTTGAGGAATCAAAGACCTATATTGTATTCTGTATCTCCTGGAATTGGAGCAACACCCAAGATGGCCAAAAGTGTAAGTGGTGTGGTGAACATGTACAGTATAAACGGGGATAACTGGGATGACTGGGAAGATGTTGTTGCCCGTTTTGATGTTGCCAGGGATTTTGCTGCTGCTAATATGATTGGAGAAAACAGCTCGTGGCCTGACTTAGATATGCTTCCCCTGGGATGGCTTAGTGATGCAGGTTCAAATGAAGGTCCACACAGAACAACTAACCTCACATTAGAAGAGCAAAAAACTATGATGACCTTGTGGTGCATGGCCAAGTCTCCTCTCATGTTTGGAGGAGATTTGAGAAAGCTTGATGATACAACATACAGTATCCTAACAAATCCTACCTTGCTGGAGATCAATTCTTTTAGCTCAAATAATAAGGAGTTTCCATGCATAAAATCTGAAGGACTTCGCTCTTGGGTTGCAACTGGAAGACGAGGAGAAATATATGTTGCTTTATTTAATCTGAACTCAAAGAAGACTACTATAACCGTGCAAAAATCGGACTTGGCCGAGGCACTTCCTGGGACGACATCGACTACTAGAGCTTCCTGCAAAGGCAAGGAAGTATGGAGCCAACTAGACTTGGGGATTATAGACCACTCCATATCCATTGCTGTAGAAACCCATGGGATTGCACTAGTTGTCCTACATTGCAGTTAG

Protein Analysis

488

Amino Acids

54.91

Weight (kDa)

6.1

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Melibiase_2 PF16499 219 - 388 2.7e-10 Alpha galactosidase A
Melibiase_C PF17801 404 - 484 9.3e-08 Alpha galactosidase C-terminal beta sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 983
AccB7I CCANNNNNTGG 2 cut(s) 150, 493
AccI GTMKAC 1 cut(s) 303
AclWI GGATC 4 cut(s) 88, 491, 504, 569
AcoI YGGCCR 3 cut(s) 813, 1071, 1314
AcsI RAATTY 1 cut(s) 537
AcuI CTGAAG 2 cut(s) 417, 1227
AfaI GTAC 2 cut(s) 414, 845
AfiI CCNNNNNNNGG 7 cut(s) 146, 150, 381, 493, 506, 794, 978
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 3 cut(s) 430, 529, 999
AhlI ACTAGT 1 cut(s) 1444
AjnI CCWGG 4 cut(s) 787, 905, 972, 1327
AluBI AGCT 8 cut(s) 174, 372, 470, 626, 945, 1111, 1173, 1352
AluI AGCT 8 cut(s) 174, 372, 470, 626, 945, 1111, 1173, 1352
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 3 cut(s) 223, 334, 1083
AlwI GGATC 4 cut(s) 88, 491, 504, 569
AoxI GGCC 5 cut(s) 365, 813, 950, 1071, 1314
ApeKI GCWGC 2 cut(s) 917, 920
ApoI RAATTY 1 cut(s) 537
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AseI ATTAAT 1 cut(s) 441
Asp700I GAANNNNTTC 1 cut(s) 1212
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 262, 1007
AsuHPI GGTGA 1 cut(s) 847
AsuNHI GCTAGC 1 cut(s) 131
AvaII GGWCC 2 cut(s) 262, 1007
BalI TGGCCA 2 cut(s) 815, 1073
BamHI GGATCC 1 cut(s) 496
BauI CACGAG 1 cut(s) 946
BbsI GAAGAC 3 cut(s) 34, 1243, 1289
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 2 cut(s) 904, 907
BccI CCATC 4 cut(s) 71, 273, 805, 972
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 4 cut(s) 789, 907, 974, 1329
BciVI GTATCC 1 cut(s) 1142
BcoDI GTCTC 3 cut(s) 223, 334, 1083
BcuI ACTAGT 1 cut(s) 1444
BfaI CTAG 7 cut(s) 132, 297, 369, 551, 1347, 1385, 1445
BfmI CTRYAG 1 cut(s) 1422
BfoI RGCGCY 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 983
BfuI GTATCC 1 cut(s) 1142
BisI GCNGC 2 cut(s) 918, 921
BlsI GCNGC 2 cut(s) 919, 922
Bme1390I CCNGG 4 cut(s) 789, 907, 974, 1329
Bme18I GGWCC 2 cut(s) 262, 1007
BmgT120I GGNCC 2 cut(s) 262, 1007
BmiI GGNNCC 2 cut(s) 498, 1379
BmrFI CCNGG 4 cut(s) 789, 907, 974, 1329
BmrI ACTGGG 2 cut(s) 874, 883
BmsI GCATC 4 cut(s) 336, 576, 749, 979
BmtI GCTAGC 1 cut(s) 135
BmuI ACTGGG 2 cut(s) 874, 883
BpiI GAAGAC 3 cut(s) 34, 1243, 1289
BpmI CTGGAG 2 cut(s) 358, 1175
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 6 cut(s) 906, 972, 973, 1317, 1328, 1432
BsaWI WCCGGW 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 7 cut(s) 146, 150, 381, 493, 506, 794, 978
Bse1I ACTGG 4 cut(s) 295, 869, 878, 1237
Bse3DI GCAATG 2 cut(s) 1416, 1456
BseBI CCWGG 4 cut(s) 789, 907, 974, 1329
BseDI CCNNGG 6 cut(s) 906, 972, 973, 1317, 1328, 1432
BseGI GGATG 3 cut(s) 591, 874, 983
BseLI CCNNNNNNNGG 7 cut(s) 146, 150, 381, 493, 506, 794, 978
BseMI GCAATG 2 cut(s) 1416, 1456
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 4 cut(s) 295, 869, 878, 1237
BseRI GAGGAG 3 cut(s) 1071, 1110, 1257
BseXI GCAGC 2 cut(s) 904, 907
BsgI GTGCAG 1 cut(s) 531
BshFI GGCC 5 cut(s) 367, 815, 952, 1073, 1316
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 1345
BslI CCNNNNNNNGG 7 cut(s) 146, 150, 381, 493, 506, 794, 978
BsmAI GTCTC 3 cut(s) 223, 334, 1083
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 1345
BsnI GGCC 5 cut(s) 367, 815, 952, 1073, 1316
Bso31I GGTCTC 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 583
Bsp1407I TGTACA 1 cut(s) 843
Bsp143I GATC 5 cut(s) 80, 94, 496, 561, 1158
Bsp19I CCATGG 1 cut(s) 1432
BspANI GGCC 5 cut(s) 367, 815, 952, 1073, 1316
BspCNI CTCAG 1 cut(s) 518
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 498, 1379
BspMI ACCTGC 1 cut(s) 983
BspOI GCTAGC 1 cut(s) 135
BspPI GGATC 4 cut(s) 88, 491, 504, 569
BspQI GCTCTTC 1 cut(s) 1032
BspTNI GGTCTC 1 cut(s) 334
BsrDI GCAATG 2 cut(s) 1416, 1456
BsrGI TGTACA 1 cut(s) 843
BsrI ACTGG 4 cut(s) 295, 869, 878, 1237
BssECI CCNNGG 6 cut(s) 906, 972, 973, 1317, 1328, 1432
BssMI GATC 5 cut(s) 80, 94, 496, 561, 1158
BssSI CACGAG 1 cut(s) 946
BssT1I CCWWGG 1 cut(s) 1432
Bst2BI CACGAG 1 cut(s) 946
Bst2UI CCWGG 4 cut(s) 789, 907, 974, 1329
Bst4CI ACNGT 4 cut(s) 660, 848, 1130, 1297
Bst6I CTCTTC 2 cut(s) 186, 1032
BstAUI TGTACA 1 cut(s) 843
BstC8I GCNNGC 2 cut(s) 133, 624
BstDEI CTNAG 4 cut(s) 32, 505, 958, 983
BstDSI CCRYGG 1 cut(s) 1432
BstENI CCTNNNNNAGG 1 cut(s) 504
BstF5I GGATG 3 cut(s) 591, 874, 983
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 5 cut(s) 83, 97, 499, 564, 1161
BstMAI GTCTC 3 cut(s) 223, 334, 1083
BstMBI GATC 5 cut(s) 80, 94, 496, 561, 1158
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 4 cut(s) 789, 907, 974, 1329
BstNSI RCATGY 1 cut(s) 844
BstSCI CCNGG 4 cut(s) 787, 905, 972, 1327
BstSFI CTRYAG 1 cut(s) 1422
BstV1I GCAGC 2 cut(s) 904, 907
BstV2I GAAGAC 3 cut(s) 34, 1243, 1289
BstX2I RGATCY 1 cut(s) 496
BstXI CCANNNNNNTGG 1 cut(s) 363
BstYI RGATCY 1 cut(s) 496
BsuI GTATCC 1 cut(s) 1142
BsuRI GGCC 5 cut(s) 367, 815, 952, 1073, 1316
BtgI CCRYGG 1 cut(s) 1432
BtsCI GGATG 3 cut(s) 591, 874, 983
BveI ACCTGC 1 cut(s) 983
Cac8I GCNNGC 2 cut(s) 133, 624
CciI TCATGA 1 cut(s) 600
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 262, 1007
Csp6I GTAC 2 cut(s) 413, 844
CviQI GTAC 2 cut(s) 413, 844
DdeI CTNAG 4 cut(s) 32, 505, 958, 983
DpnI GATC 5 cut(s) 82, 96, 498, 563, 1160
DpnII GATC 5 cut(s) 80, 94, 496, 561, 1158
EaeI YGGCCR 3 cut(s) 813, 1071, 1314
Eam1104I CTCTTC 2 cut(s) 186, 1032
EarI CTCTTC 2 cut(s) 186, 1032
Eco130I CCWWGG 1 cut(s) 1432
Eco31I GGTCTC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 262, 1007
Eco57I CTGAAG 2 cut(s) 417, 1227
EcoNI CCTNNNNNAGG 1 cut(s) 504
EcoRII CCWGG 4 cut(s) 787, 905, 972, 1327
EcoT14I CCWWGG 1 cut(s) 1432
EcoT22I ATGCAT 2 cut(s) 742, 1199
ErhI CCWWGG 1 cut(s) 1432
Esp3I CGTCTC 1 cut(s) 223
FaqI GGGAC 1 cut(s) 1345
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 918, 921
FokI GGATG 3 cut(s) 598, 881, 990
Fsp4HI GCNGC 2 cut(s) 918, 921
FspBI CTAG 7 cut(s) 132, 297, 369, 551, 1347, 1385, 1445
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 918, 921
GsuI CTGGAG 2 cut(s) 358, 1175
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 5 cut(s) 367, 815, 952, 1073, 1316
HapII CCGG 1 cut(s) 39
HhaI GCGC 1 cut(s) 296
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 1109
HinfI GANTC 2 cut(s) 305, 757
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 847
Hpy166II GTNNAC 5 cut(s) 262, 304, 393, 838, 1010
Hpy188I TCNGA 5 cut(s) 108, 585, 1207, 1272, 1309
Hpy188III TCNNGA 2 cut(s) 375, 601
Hpy8I GTNNAC 5 cut(s) 262, 304, 393, 838, 1010
HpyAV CCTTC 3 cut(s) 624, 998, 1202
HpyCH4III ACNGT 4 cut(s) 660, 848, 1130, 1297
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 4 cut(s) 32, 505, 958, 983
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 5 cut(s) 80, 94, 496, 561, 1158
LguI GCTCTTC 1 cut(s) 1032
LmnI GCTCC 3 cut(s) 377, 797, 1377
Lsp1109I GCAGC 2 cut(s) 904, 907
LweI GCATC 4 cut(s) 336, 576, 749, 979
MaeI CTAG 7 cut(s) 132, 297, 369, 551, 1347, 1385, 1445
MaeIII GTNAC 3 cut(s) 117, 228, 286
MalI GATC 5 cut(s) 82, 96, 498, 563, 1160
MboI GATC 5 cut(s) 80, 94, 496, 561, 1158
MboII GAAGA 8 cut(s) 39, 86, 89, 203, 890, 1049, 1248, 1294
MfeI CAATTG 1 cut(s) 667
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 1 cut(s) 583
MlsI TGGCCA 2 cut(s) 815, 1073
MluCI AATT 6 cut(s) 324, 438, 537, 667, 792, 1162
MluNI TGGCCA 2 cut(s) 815, 1073
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 131
Mox20I TGGCCA 2 cut(s) 815, 1073
Mph1103I ATGCAT 2 cut(s) 742, 1199
MroXI GAANNNNTTC 1 cut(s) 1212
MscI TGGCCA 2 cut(s) 815, 1073
MseI TTAA 3 cut(s) 102, 441, 1266
MslI CAYNNNNRTG 2 cut(s) 243, 605
Msp20I TGGCCA 2 cut(s) 815, 1073
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 4 cut(s) 789, 907, 974, 1329
MunI CAATTG 1 cut(s) 667
MvaI CCWGG 4 cut(s) 789, 907, 974, 1329
MwoI GCNNNNNNNGC 1 cut(s) 476
NcoI CCATGG 1 cut(s) 1432
NdeII GATC 5 cut(s) 80, 94, 496, 561, 1158
NheI GCTAGC 1 cut(s) 131
NlaIV GGNNCC 2 cut(s) 498, 1379
NmeAIII GCCGAG 1 cut(s) 1342
NmuCI GTSAC 2 cut(s) 117, 286
NsiI ATGCAT 2 cut(s) 742, 1199
NspI RCATGY 1 cut(s) 844
PagI TCATGA 1 cut(s) 600
PasI CCCWGGG 1 cut(s) 973
PciI ACATGT 1 cut(s) 840
PciSI GCTCTTC 1 cut(s) 1032
PdmI GAANNNNTTC 1 cut(s) 1212
PfeI GAWTC 1 cut(s) 757
PflMI CCANNNNNTGG 2 cut(s) 150, 493
PfoI TCCNGGA 1 cut(s) 787
PkrI GCNGC 2 cut(s) 919, 922
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PscI ACATGT 1 cut(s) 840
PshBI ATTAAT 1 cut(s) 441
Psp6I CCWGG 4 cut(s) 787, 905, 972, 1327
PspGI CCWGG 4 cut(s) 787, 905, 972, 1327
PspN4I GGNNCC 2 cut(s) 498, 1379
PspPI GGNCC 2 cut(s) 262, 1007
PsuI RGATCY 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 174
RsaI GTAC 2 cut(s) 414, 845
RsaNI GTAC 2 cut(s) 413, 844
RseI CAYNNNNRTG 2 cut(s) 243, 605
SapI GCTCTTC 1 cut(s) 1032
SaqAI TTAA 3 cut(s) 102, 441, 1266
SatI GCNGC 2 cut(s) 918, 921
Sau3AI GATC 5 cut(s) 80, 94, 496, 561, 1158
Sau96I GGNCC 2 cut(s) 262, 1007
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 4 cut(s) 789, 907, 974, 1329
SduI GDGCHC 1 cut(s) 583
SfaNI GCATC 4 cut(s) 336, 576, 749, 979
SfcI CTRYAG 1 cut(s) 1422
SinI GGWCC 2 cut(s) 262, 1007
SmiMI CAYNNNNRTG 2 cut(s) 243, 605
SpeI ACTAGT 1 cut(s) 1444
Sse9I AATT 6 cut(s) 324, 438, 537, 667, 792, 1162
SspMI CTAG 7 cut(s) 132, 297, 369, 551, 1347, 1385, 1445
StyD4I CCNGG 4 cut(s) 787, 905, 972, 1327
StyI CCWWGG 1 cut(s) 1432
TaaI ACNGT 4 cut(s) 660, 848, 1130, 1297
TaqI TCGA 1 cut(s) 1340
TaqII GACCGA 1 cut(s) 358
TasI AATT 6 cut(s) 324, 438, 537, 667, 792, 1162
TatI WGTACW 2 cut(s) 412, 843
TfiI GAWTC 1 cut(s) 757
Tru1I TTAA 3 cut(s) 102, 441, 1266
Tru9I TTAA 3 cut(s) 102, 441, 1266
TseFI GTSAC 2 cut(s) 117, 286
TseI GCWGC 2 cut(s) 917, 920
Tsp45I GTSAC 2 cut(s) 117, 286
TspDTI ATGAA 6 cut(s) 87, 345, 589, 737, 741, 1017
TspGWI ACGGA 1 cut(s) 546
Van91I CCANNNNNTGG 2 cut(s) 150, 493
VpaK11BI GGWCC 2 cut(s) 262, 1007
VspI ATTAAT 1 cut(s) 441
XagI CCTNNNNNAGG 1 cut(s) 504
XapI RAATTY 1 cut(s) 537
XceI RCATGY 1 cut(s) 844
XcmI CCANNNNNNNNNTGG 2 cut(s) 74, 147
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 1212
XspI CTAG 7 cut(s) 132, 297, 369, 551, 1347, 1385, 1445
Zsp2I ATGCAT 2 cut(s) 742, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.