Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000006.1

Orthogroup ID

OG0015646

Physical Location & Seq

Genomic Coordinates Reverse (-)

81579 .. 84657

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000006.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgaagatggatcaaggtgggttgatcttcttaatcagagggtatggtcacaagaacttgctagcaccccacccagaggttggaactcctataacgcaatcagctggactattacagaggaagagttcttgcaaaatgctgaaatcatctccaagaagttacttcctcacggatatgaggagaaatgtgacctgtgctagtgtagactctctcggagttgatgtaattgatgaatgggggagaccgatgcctgacccagataggtggcctagctccagaggtgggaaagggtttactgaagtggcagacagagtacataaaatgggtttgaagtttggaattaatgttatgagaggaataaacacacaagctgtaaaagccaatacgcagatcttggatcctctctcggggaatgtttatgattatttcaatggaaaaatttggactgcacaagatatagggatcaaggagaggacttgtgctcggatgcaaaatggtttcatgagtgtggatacaaccttgcaagctggaaggttcttcttggcagacctctatcaactgtatgccaattggggtgttgattttgtgaaacaggactgcgtgtttggtaatgacttggatatgaatgaaatatatcatgcatcatggcttttgaggaatgatagacctatattgtattctgtatctcctggaattggagcaacaaccatgatggccaaaagagtaagtggtgtagtgaacatgtacagtataaacgggcataactgggatgactgggaagatgttgttgcccgttttgatgttgccagggattttgctgctgctaatatgattggagcaaacagctcgtggcctgacttagatatgcttcccctgggatggcttagtgatgcaggttcaaatgaaggtccacacagaacaactaacctcacattagaggagcaaagaactatgatgaccttgtggtgcatggccaagtctcctctcatgtttggaggagatctgagaaagcttgatgatacaacttacagtatcctaacaaatcctaccttgctagaggtcaattcttttagctcaaataataaggagtttccatacataaaatctgaaggacttcgctcttgggttgcaactggaagacaacgagaaatatatgtggctttatttaatctgaactcaaagaagactactataaccgctcaaaaatcagacttagccagggcacttcctgggacaacattgactactagagcttcctgcaaaggcaaagaagtatggagccgactagacttggggattatagaccactccatatccattgctgtagaaacccatgggactgcactagttgtcctacattgcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005994 GO:0005995 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006672 GO:0006677 GO:0006687 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015925 GO:0016042 GO:0016052 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019377 GO:0030149 GO:0034641 GO:0043603 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044262 GO:0044275 GO:0044424 GO:0044464 GO:0046352 GO:0046466 GO:0046477 GO:0046479 GO:0046514 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Melibiase_2

Protein Analysis

455

Amino Acids

50.73

Weight (kDa)

8.08

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015646)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05560
rosa_chinensis	RchiOBHm_Chr3g0454341
rosa_laevigata	RLG00000025459
rosa_multiflora	Rmu_sc0000006.1_g000022 Rmu_sc0007209.1_g000014
rosa_roxburghii	Rroxscaffold_165G00437170 Rroxscaffold_6G00425190
rosa_rugosa	Rorug02G0654200 Rorug02G0654300 Rorug02G0654400 Rorug02G0654500
rosa_samantha	Rh3AG058400 Rh3BG060100 Rh3CG059200 Rh3DG060500
rosa_wichuraiana	Rw3G004490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	884
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	1199
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	1 cut(s)	1197
AclWI	GGATC	4 cut(s)	18, 392, 405, 470
AcoI	YGGCCR	2 cut(s)	714, 972
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	2 cut(s)	318, 1128
AfaI	GTAC	2 cut(s)	315, 746
AfiI	CCNNNNNNNGG	6 cut(s)	76, 80, 282, 407, 695, 879
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	3 cut(s)	331, 430, 900
AhlI	ACTAGT	1 cut(s)	1345
AjnI	CCWGG	5 cut(s)	688, 806, 873, 1217, 1228
AluBI	AGCT	8 cut(s)	104, 273, 371, 527, 846, 1012, 1074, 1253
AluI	AGCT	8 cut(s)	104, 273, 371, 527, 846, 1012, 1074, 1253
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	2 cut(s)	235, 984
AlwI	GGATC	4 cut(s)	18, 392, 405, 470
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	4 cut(s)	266, 714, 851, 972
ApeKI	GCWGC	2 cut(s)	818, 821
ApoI	RAATTY	1 cut(s)	438
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AseI	ATTAAT	1 cut(s)	342
Asp700I	GAANNNNTTC	1 cut(s)	1113
AspS9I	GGNCC	1 cut(s)	908
AsuNHI	GCTAGC	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	908
BaeGI	GKGCMC	1 cut(s)	1225
BalI	TGGCCA	2 cut(s)	716, 974
BamHI	GGATCC	1 cut(s)	397
BauI	CACGAG	1 cut(s)	847
BbsI	GAAGAC	2 cut(s)	1144, 1190
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	2 cut(s)	805, 808
BccI	CCATC	2 cut(s)	706, 873
BcgI	CGANNNNNNTGC	2 cut(s)	828, 862
BciT130I	CCWGG	5 cut(s)	690, 808, 875, 1219, 1230
BciVI	GTATCC	2 cut(s)	505, 1043
BcoDI	GTCTC	2 cut(s)	235, 984
BcuI	ACTAGT	1 cut(s)	1345
BfaI	CTAG	7 cut(s)	62, 198, 270, 1055, 1248, 1286, 1346
BfmI	CTRYAG	1 cut(s)	1323
BfuAI	ACCTGC	1 cut(s)	884
BfuI	GTATCC	2 cut(s)	505, 1043
BglII	AGATCT	2 cut(s)	390, 1000
BisI	GCNGC	2 cut(s)	819, 822
BlsI	GCNGC	2 cut(s)	820, 823
Bme1390I	CCNGG	5 cut(s)	690, 808, 875, 1219, 1230
Bme18I	GGWCC	1 cut(s)	908
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	908
BmiI	GGNNCC	2 cut(s)	399, 1280
BmrFI	CCNGG	5 cut(s)	690, 808, 875, 1219, 1230
BmrI	ACTGGG	2 cut(s)	775, 784
BmsI	GCATC	4 cut(s)	237, 477, 650, 880
BmtI	GCTAGC	1 cut(s)	65
BmuI	ACTGGG	2 cut(s)	775, 784
BpiI	GAAGAC	2 cut(s)	1144, 1190
BpmI	CTGGAG	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	6 cut(s)	807, 873, 874, 1218, 1229, 1333
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	6 cut(s)	76, 80, 282, 407, 695, 879
Bse1I	ACTGG	3 cut(s)	770, 779, 1138
Bse3DI	GCAATG	2 cut(s)	1317, 1357
BseBI	CCWGG	5 cut(s)	690, 808, 875, 1219, 1230
BseDI	CCNNGG	6 cut(s)	807, 873, 874, 1218, 1229, 1333
BseGI	GGATG	3 cut(s)	492, 775, 884
BseLI	CCNNNNNNNGG	6 cut(s)	76, 80, 282, 407, 695, 879
BseMI	GCAATG	2 cut(s)	1317, 1357
BseMII	CTCAG	1 cut(s)	995
BseNI	ACTGG	3 cut(s)	770, 779, 1138
BseRI	GAGGAG	4 cut(s)	193, 953, 972, 1011
BseSI	GKGCMC	1 cut(s)	1225
BseXI	GCAGC	2 cut(s)	805, 808
BsgI	GTGCAG	2 cut(s)	432, 1326
BshFI	GGCC	4 cut(s)	268, 716, 853, 974
BsiHKAI	GWGCWC	1 cut(s)	484
BsiHKCI	CYCGRG	1 cut(s)	406
BslFI	GGGAC	2 cut(s)	1246, 1351
BslI	CCNNNNNNNGG	6 cut(s)	76, 80, 282, 407, 695, 879
BsmAI	GTCTC	2 cut(s)	235, 984
BsmFI	GGGAC	2 cut(s)	1246, 1351
BsnI	GGCC	4 cut(s)	268, 716, 853, 974
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	484, 1225
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	6 cut(s)	10, 24, 390, 397, 462, 1000
Bsp19I	CCATGG	1 cut(s)	1333
BspACI	CCGC	1 cut(s)	1197
BspANI	GGCC	4 cut(s)	268, 716, 853, 974
BspCNI	CTCAG	1 cut(s)	996
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	399, 1280
BspMI	ACCTGC	1 cut(s)	884
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	4 cut(s)	18, 392, 405, 470
BspTNI	GGTCTC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	1199
BsrDI	GCAATG	2 cut(s)	1317, 1357
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	3 cut(s)	770, 779, 1138
BssECI	CCNNGG	6 cut(s)	807, 873, 874, 1218, 1229, 1333
BssMI	GATC	6 cut(s)	10, 24, 390, 397, 462, 1000
BssSI	CACGAG	1 cut(s)	847
BssT1I	CCWWGG	1 cut(s)	1333
Bst2BI	CACGAG	1 cut(s)	847
Bst2UI	CCWGG	5 cut(s)	690, 808, 875, 1219, 1230
Bst4CI	ACNGT	3 cut(s)	561, 749, 1031
Bst6I	CTCTTC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	2 cut(s)	63, 525
BstDEI	CTNAG	4 cut(s)	859, 884, 1004, 1213
BstDSI	CCRYGG	1 cut(s)	1333
BstF5I	GGATG	3 cut(s)	492, 775, 884
BstKTI	GATC	6 cut(s)	13, 27, 393, 400, 465, 1003
BstMAI	GTCTC	2 cut(s)	235, 984
BstMBI	GATC	6 cut(s)	10, 24, 390, 397, 462, 1000
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	5 cut(s)	690, 808, 875, 1219, 1230
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	5 cut(s)	688, 806, 873, 1217, 1228
BstSFI	CTRYAG	1 cut(s)	1323
BstSLI	GKGCMC	1 cut(s)	1225
BstV1I	GCAGC	2 cut(s)	805, 808
BstV2I	GAAGAC	2 cut(s)	1144, 1190
BstX2I	RGATCY	3 cut(s)	390, 397, 1000
BstXI	CCANNNNNNTGG	1 cut(s)	264
BstYI	RGATCY	3 cut(s)	390, 397, 1000
BsuI	GTATCC	2 cut(s)	505, 1043
BsuRI	GGCC	4 cut(s)	268, 716, 853, 974
BtgI	CCRYGG	1 cut(s)	1333
BtsCI	GGATG	3 cut(s)	492, 775, 884
BveI	ACCTGC	1 cut(s)	884
Cac8I	GCNNGC	2 cut(s)	63, 525
CciI	TCATGA	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	908
Csp6I	GTAC	2 cut(s)	314, 745
CviAII	CATG	8 cut(s)	502, 638, 645, 709, 742, 970, 988, 1334
CviQI	GTAC	2 cut(s)	314, 745
DdeI	CTNAG	4 cut(s)	859, 884, 1004, 1213
DpnI	GATC	6 cut(s)	12, 26, 392, 399, 464, 1002
DpnII	GATC	6 cut(s)	10, 24, 390, 397, 462, 1000
EaeI	YGGCCR	2 cut(s)	714, 972
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	1333
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	908
Eco57I	CTGAAG	2 cut(s)	318, 1128
Eco88I	CYCGRG	1 cut(s)	406
EcoRII	CCWGG	5 cut(s)	688, 806, 873, 1217, 1228
EcoT14I	CCWWGG	1 cut(s)	1333
EcoT22I	ATGCAT	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	1333
FaeI	CATG	8 cut(s)	505, 641, 648, 712, 745, 973, 991, 1337
FaqI	GGGAC	2 cut(s)	1246, 1351
FatI	CATG	8 cut(s)	501, 637, 644, 708, 741, 969, 987, 1333
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	819, 822
FokI	GGATG	3 cut(s)	499, 782, 891
Fsp4HI	GCNGC	2 cut(s)	819, 822
FspBI	CTAG	7 cut(s)	62, 198, 270, 1055, 1248, 1286, 1346
GluI	GCNGC	2 cut(s)	819, 822
GsuI	CTGGAG	1 cut(s)	259
HaeIII	GGCC	4 cut(s)	268, 716, 853, 974
Hin1II	CATG	8 cut(s)	505, 641, 648, 712, 745, 973, 991, 1337
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	1 cut(s)	206
Hpy166II	GTNNAC	4 cut(s)	205, 294, 739, 911
Hpy188I	TCNGA	7 cut(s)	38, 215, 486, 1005, 1108, 1173, 1210
Hpy188III	TCNNGA	2 cut(s)	276, 502
Hpy8I	GTNNAC	4 cut(s)	205, 294, 739, 911
HpyAV	CCTTC	3 cut(s)	525, 899, 1103
HpyCH4III	ACNGT	3 cut(s)	561, 749, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	4 cut(s)	859, 884, 1004, 1213
Hsp92II	CATG	8 cut(s)	505, 641, 648, 712, 745, 973, 991, 1337
Kzo9I	GATC	6 cut(s)	10, 24, 390, 397, 462, 1000
LmnI	GCTCC	5 cut(s)	278, 698, 836, 940, 1278
Lsp1109I	GCAGC	2 cut(s)	805, 808
LweI	GCATC	4 cut(s)	237, 477, 650, 880
MaeI	CTAG	7 cut(s)	62, 198, 270, 1055, 1248, 1286, 1346
MaeIII	GTNAC	3 cut(s)	47, 158, 187
MalI	GATC	6 cut(s)	12, 26, 392, 399, 464, 1002
MbiI	CCGCTC	1 cut(s)	1199
MboI	GATC	6 cut(s)	10, 24, 390, 397, 462, 1000
MboII	GAAGA	7 cut(s)	16, 19, 133, 529, 791, 1149, 1195
MfeI	CAATTG	1 cut(s)	568
MflI	RGATCY	3 cut(s)	390, 397, 1000
MhlI	GDGCHC	2 cut(s)	484, 1225
MlsI	TGGCCA	2 cut(s)	716, 974
MluCI	AATT	7 cut(s)	225, 339, 438, 568, 693, 1063, 1363
MluNI	TGGCCA	2 cut(s)	716, 974
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	61
Mox20I	TGGCCA	2 cut(s)	716, 974
Mph1103I	ATGCAT	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	1113
MscI	TGGCCA	2 cut(s)	716, 974
MseI	TTAA	3 cut(s)	32, 342, 1167
MslI	CAYNNNNRTG	2 cut(s)	173, 506
Msp20I	TGGCCA	2 cut(s)	716, 974
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	5 cut(s)	690, 808, 875, 1219, 1230
MunI	CAATTG	1 cut(s)	568
MvaI	CCWGG	5 cut(s)	690, 808, 875, 1219, 1230
MwoI	GCNNNNNNNGC	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	1333
NdeII	GATC	6 cut(s)	10, 24, 390, 397, 462, 1000
NheI	GCTAGC	1 cut(s)	61
NlaIII	CATG	8 cut(s)	505, 641, 648, 712, 745, 973, 991, 1337
NlaIV	GGNNCC	2 cut(s)	399, 1280
NmuCI	GTSAC	2 cut(s)	47, 187
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	1 cut(s)	745
PagI	TCATGA	1 cut(s)	501
PasI	CCCWGGG	1 cut(s)	874
PciI	ACATGT	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	1113
PflMI	CCANNNNNTGG	1 cut(s)	80
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	2 cut(s)	820, 823
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PscI	ACATGT	1 cut(s)	741
PshBI	ATTAAT	1 cut(s)	342
Psp6I	CCWGG	5 cut(s)	688, 806, 873, 1217, 1228
PspGI	CCWGG	5 cut(s)	688, 806, 873, 1217, 1228
PspN4I	GGNNCC	2 cut(s)	399, 1280
PspPI	GGNCC	1 cut(s)	908
PsuI	RGATCY	3 cut(s)	390, 397, 1000
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	315, 746
RsaNI	GTAC	2 cut(s)	314, 745
RseI	CAYNNNNRTG	2 cut(s)	173, 506
SaqAI	TTAA	3 cut(s)	32, 342, 1167
SatI	GCNGC	2 cut(s)	819, 822
Sau3AI	GATC	6 cut(s)	10, 24, 390, 397, 462, 1000
Sau96I	GGNCC	1 cut(s)	908
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	5 cut(s)	690, 808, 875, 1219, 1230
SduI	GDGCHC	2 cut(s)	484, 1225
SfaNI	GCATC	4 cut(s)	237, 477, 650, 880
SfcI	CTRYAG	1 cut(s)	1323
SinI	GGWCC	1 cut(s)	908
SmiMI	CAYNNNNRTG	2 cut(s)	173, 506
SpeI	ACTAGT	1 cut(s)	1345
Sse9I	AATT	7 cut(s)	225, 339, 438, 568, 693, 1063, 1363
SsiI	CCGC	1 cut(s)	1197
SspMI	CTAG	7 cut(s)	62, 198, 270, 1055, 1248, 1286, 1346
StyD4I	CCNGG	5 cut(s)	688, 806, 873, 1217, 1228
StyI	CCWWGG	1 cut(s)	1333
TaaI	ACNGT	3 cut(s)	561, 749, 1031
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	7 cut(s)	225, 339, 438, 568, 693, 1063, 1363
TatI	WGTACW	2 cut(s)	313, 744
Tru1I	TTAA	3 cut(s)	32, 342, 1167
Tru9I	TTAA	3 cut(s)	32, 342, 1167
TseFI	GTSAC	2 cut(s)	47, 187
TseI	GCWGC	2 cut(s)	818, 821
Tsp45I	GTSAC	2 cut(s)	47, 187
TspDTI	ATGAA	6 cut(s)	17, 246, 490, 638, 642, 918
TspGWI	ACGGA	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	908
VspI	ATTAAT	1 cut(s)	342
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	1113
XspI	CTAG	7 cut(s)	62, 198, 270, 1055, 1248, 1286, 1346
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.