Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016871

Physical Location & Seq

Genomic Coordinates Reverse (-)

4556104 .. 4559297

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07600.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGACAAGCAGCAGCAGCGACAATGGGACGAGTTGAACCTCGACTGTTTACTAAACGTGTTTGCAAGACTTGGAATGGAGGAACTGCTCTACGATGTCCCCTTCGTCTGCAAGTCATGGCACAGAGCAAGCCACAATCCTTCATGCTGGCAGTCTCTTGATTTTCCCGACATTGATCATAGTGCCATTGACAAGGATGACTATTCCGATGATTCCTCTGAGGAAGATGAACCCAAACCTCGGGAACCCAATTCTTTCTATGATAAGTTCGTGCACGTTTATCCAATTGAGAGCAGTCGTTTCTCTATCAGTGGTATTGTAAAGGTTGTCCTCAAGCGCAGCAACGGACTTGCCACTTCTCTTGGGCTACCCCGAAATTGCGTACCCCAAGTTCTTACATCTGTTTCAGATGTGATTCCCGGACTTAAGTTCTTGTCTCTTTGGTGCGACTACAAGCTCACAATGCAGTACAAACTCGCACTTAGGGAACTGTTTACCAAGTGTACAAACTTGGAGACATTGTCATTGGAAAGCAGCTCCCGCAACTTCCGCCACCAGAAACTTAATAGTTTTCTAATCCTCACACATCTTCGCTGCAAGAGTGTTGTTGATTTGCGCGTGTTGAATTCCCAGATGTGTAAACACGACACATTTGCGATTTCCAGCAAGCTGCCCAAATTAAAGTACTTGAGCTTTAGGAAGTGTGACATGGATCGAGACGGTATCATCAGCTTACTGCAGAGGTGCACAGAGATGGTGGATATTTTTAAAGAGATGGCATCGGCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

264

Amino Acids

30.47

Weight (kDa)

6.65

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07600 FvH4_6g07600
rosa_chinensis	RchiOBHm_Chr4g0385781 RchiOBHm_Chr4g0385921
rosa_laevigata	RLG00000010201
rosa_multiflora	Rmu_sc0007400.1_g000010 Rmu_sc0024454.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333520
rosa_rugosa	Rorug03G0302900 Rorug03G0303000
rosa_samantha	Rh4AG007500 Rh4BG005300 Rh4CG008100 Rh4DG007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	618
AciI	CCGC	2 cut(s)	541, 550
AclWI	GGATC	1 cut(s)	720
AcsI	RAATTY	1 cut(s)	625
AfaI	GTAC	4 cut(s)	384, 470, 505, 686
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflII	CTTAAG	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	37, 625
AluBI	AGCT	5 cut(s)	457, 537, 670, 693, 732
AluI	AGCT	5 cut(s)	457, 537, 670, 693, 732
Alw21I	GWGCWC	2 cut(s)	276, 749
Alw26I	GTCTC	4 cut(s)	159, 441, 509, 711
Alw44I	GTGCAC	2 cut(s)	272, 745
AlwI	GGATC	1 cut(s)	720
Ama87I	CYCGRG	1 cut(s)	240
ApaLI	GTGCAC	2 cut(s)	272, 745
ApeKI	GCWGC	7 cut(s)	10, 13, 16, 339, 534, 594, 670
ApoI	RAATTY	1 cut(s)	625
AspLEI	GCGC	2 cut(s)	339, 618
AsuC2I	CCSGG	1 cut(s)	420
AvaI	CYCGRG	1 cut(s)	240
BaeGI	GKGCMC	2 cut(s)	276, 749
Bbv12I	GWGCWC	2 cut(s)	276, 749
BbvI	GCAGC	7 cut(s)	22, 25, 28, 351, 546, 581, 657
BccI	CCATC	2 cut(s)	748, 769
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	4 cut(s)	159, 441, 509, 711
BfaI	CTAG	1 cut(s)	790
BfmI	CTRYAG	1 cut(s)	737
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	7 cut(s)	11, 14, 17, 340, 535, 595, 671
BlsI	GCNGC	7 cut(s)	12, 15, 18, 341, 536, 596, 672
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	1 cut(s)	420
BmeT110I	CYCGRG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	788
BpuEI	CTTGAG	2 cut(s)	317, 709
BpuMI	CCSGG	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	210
BseSI	GKGCMC	2 cut(s)	276, 749
BseXI	GCAGC	7 cut(s)	22, 25, 28, 351, 546, 581, 657
Bsh1236I	CGCG	1 cut(s)	618
BsiHKAI	GWGCWC	2 cut(s)	276, 749
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	2 cut(s)	41, 83
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	4 cut(s)	159, 441, 509, 711
BsmBI	CGTCTC	1 cut(s)	711
BsmFI	GGGAC	2 cut(s)	41, 83
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	276, 749
Bsp1407I	TGTACA	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	175, 712
BspACI	CCGC	2 cut(s)	541, 550
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	741
BspPI	GGATC	1 cut(s)	720
BspTI	CTTAAG	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	2 cut(s)	175, 712
Bst4CI	ACNGT	3 cut(s)	47, 492, 722
BstAFI	CTTAAG	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	130, 149, 668
BstDEI	CTNAG	2 cut(s)	219, 482
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	618
BstHHI	GCGC	2 cut(s)	339, 618
BstKTI	GATC	2 cut(s)	178, 715
BstMAI	GTCTC	4 cut(s)	159, 441, 509, 711
BstMBI	GATC	2 cut(s)	175, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 463, 540, 549
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	1 cut(s)	737
BstSLI	GKGCMC	2 cut(s)	276, 749
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	7 cut(s)	22, 25, 28, 351, 546, 581, 657
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	3 cut(s)	130, 149, 668
CfoI	GCGC	2 cut(s)	339, 618
Csp6I	GTAC	4 cut(s)	383, 469, 504, 685
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	3 cut(s)	117, 144, 709
CviJI	RGCY	8 cut(s)	132, 367, 457, 537, 670, 693, 732, 785
CviKI_1	RGCY	8 cut(s)	132, 367, 457, 537, 670, 693, 732, 785
CviQI	GTAC	4 cut(s)	383, 469, 504, 685
DdeI	CTNAG	2 cut(s)	219, 482
DpnI	GATC	2 cut(s)	177, 714
DpnII	GATC	2 cut(s)	175, 712
DraI	TTTAAA	1 cut(s)	769
EciI	GGCGGA	1 cut(s)	539
Eco88I	CYCGRG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	625
Esp3I	CGTCTC	1 cut(s)	711
FaeI	CATG	3 cut(s)	120, 147, 712
FaiI	YATR	5 cut(s)	118, 145, 180, 261, 710
FaqI	GGGAC	2 cut(s)	41, 83
FatI	CATG	3 cut(s)	116, 143, 708
FauI	CCCGC	1 cut(s)	548
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	7 cut(s)	11, 14, 17, 340, 535, 595, 671
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	7 cut(s)	11, 14, 17, 340, 535, 595, 671
FspBI	CTAG	1 cut(s)	790
GlaI	GCGC	2 cut(s)	338, 617
GluI	GCNGC	7 cut(s)	11, 14, 17, 340, 535, 595, 671
HapII	CCGG	1 cut(s)	420
HhaI	GCGC	2 cut(s)	339, 618
Hin1II	CATG	3 cut(s)	120, 147, 712
Hin6I	GCGC	2 cut(s)	337, 616
HinP1I	GCGC	2 cut(s)	337, 616
HinfI	GANTC	2 cut(s)	212, 415
HpaII	CCGG	1 cut(s)	420
Hpy166II	GTNNAC	6 cut(s)	50, 274, 495, 504, 641, 747
Hpy188I	TCNGA	3 cut(s)	208, 220, 409
Hpy188III	TCNNGA	4 cut(s)	158, 167, 242, 716
Hpy8I	GTNNAC	6 cut(s)	50, 274, 495, 504, 641, 747
HpyAV	CCTTC	2 cut(s)	112, 150
HpyCH4III	ACNGT	3 cut(s)	47, 492, 722
HpyCH4IV	ACGT	2 cut(s)	57, 276
HpyCH4V	TGCA	7 cut(s)	65, 111, 274, 466, 597, 739, 747
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 463, 540, 549
HpyF3I	CTNAG	2 cut(s)	219, 482
HpySE526I	ACGT	2 cut(s)	57, 276
Hsp92II	CATG	3 cut(s)	120, 147, 712
HspAI	GCGC	2 cut(s)	337, 616
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	175, 712
LmnI	GCTCC	1 cut(s)	542
LpnPI	CCDG	5 cut(s)	133, 433, 569, 644, 676
Lsp1109I	GCAGC	7 cut(s)	22, 25, 28, 351, 546, 581, 657
LweI	GCATC	1 cut(s)	788
MaeI	CTAG	1 cut(s)	790
MaeII	ACGT	2 cut(s)	57, 276
MaeIII	GTNAC	1 cut(s)	704
MalI	GATC	2 cut(s)	177, 714
MboI	GATC	2 cut(s)	175, 712
MboII	GAAGA	2 cut(s)	236, 581
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	276, 749
MluCI	AATT	5 cut(s)	250, 285, 376, 625, 677
MnlI	CCTC	8 cut(s)	50, 73, 214, 226, 249, 341, 590, 735
MseI	TTAA	4 cut(s)	426, 564, 680, 768
MslI	CAYNNNNRTG	1 cut(s)	752
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	420
MunI	CAATTG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	4 cut(s)	16, 463, 540, 549
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	2 cut(s)	175, 712
NlaIII	CATG	3 cut(s)	120, 147, 712
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	704
PfeI	GAWTC	2 cut(s)	212, 415
PflFI	GACNNNGTC	1 cut(s)	520
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	7 cut(s)	12, 15, 18, 341, 536, 596, 672
PspN4I	GGNNCC	1 cut(s)	246
PsrI	GAACNNNNNNTAC	2 cut(s)	375, 407
PstI	CTGCAG	1 cut(s)	741
PsyI	GACNNNGTC	1 cut(s)	520
RsaI	GTAC	4 cut(s)	384, 470, 505, 686
RsaNI	GTAC	4 cut(s)	383, 469, 504, 685
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	4 cut(s)	426, 564, 680, 768
SatI	GCNGC	7 cut(s)	11, 14, 17, 340, 535, 595, 671
Sau3AI	GATC	2 cut(s)	175, 712
ScaI	AGTACT	1 cut(s)	686
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	276, 749
SfaNI	GCATC	1 cut(s)	788
SfcI	CTRYAG	1 cut(s)	737
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	3 cut(s)	332, 425, 688
SmoI	CTYRAG	3 cut(s)	332, 425, 688
Sse9I	AATT	5 cut(s)	250, 285, 376, 625, 677
SsiI	CCGC	2 cut(s)	541, 550
SspMI	CTAG	1 cut(s)	790
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	3 cut(s)	47, 492, 722
TaiI	ACGT	2 cut(s)	60, 279
TaqI	TCGA	2 cut(s)	42, 715
TasI	AATT	5 cut(s)	250, 285, 376, 625, 677
TatI	WGTACW	3 cut(s)	468, 503, 684
TfiI	GAWTC	2 cut(s)	212, 415
Tru1I	TTAA	4 cut(s)	426, 564, 680, 768
Tru9I	TTAA	4 cut(s)	426, 564, 680, 768
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	7 cut(s)	10, 13, 16, 339, 534, 594, 670
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	2 cut(s)	132, 243
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	520
Vha464I	CTTAAG	1 cut(s)	425
VneI	GTGCAC	2 cut(s)	272, 745
XapI	RAATTY	1 cut(s)	625
XspI	CTAG	1 cut(s)	790
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.