Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016871

Physical Location & Seq

Genomic Coordinates Forward (+)

976670 .. 978482

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATACACAACGACGATGGGACGAGTTAAACCCTGACTGTTTACTAAACGTGTTTGGAAGACTTGGAATGGAGGAACTGCTCTATGATGTCCCATTTGTGTGCAAGTCATGGCATAGAGCAAGCCACAATCCATCGTGCTGGCAATCTCTCATTTTTCCAGACATTGATCATAATGCTGTTGACGAAGATGAGAGTATCAAATATGATGCTTCCTCTGAGGACAATGAGTCCAAAGCTCAGAGTTTTGGTGCTTTCTACAACAGATTCATGCATGTATATTGGATTGACAGCAGTCATTTCTCAATTGGTGGTATTATAAAGGTTGTCATCAAGCGCAGCAACGGACTTGCTACTGTTCTTAAGCTACCTCAAAACTCCACAGAAGAAGTTCTTACATCTGTTTCAGATGTGTGTCCTGGACTTAAGTTTTTGTCTCTATCGTGTGACTACAAGTTCTCAATCCTTTCAAAGTACTCCCTCGCAGTTCAGGAACTGATTACGAATTGTTCAAATTTGGAGACATTGTCATTGGGACTCAGCTGCCACCGCTACCGCAACCAGAGATTTAATCATGTTGGACTCCTGGTACAGATCAGCATTCACTGCAAGAATGTTGTAGATTTGCGCGTGTCGAATTCCCAGATATGTAAATATGGGACATTCTCGATTGCCACCTTGCTGCCTAAAATAAAGTACTTGAGCTTTAGGAAGTGTGACATTGATCAAAAAGATCTCATCAGCTTACTGCTGGGGTGCAAAGAGCTAGTGCTTTTGGATATGAGAGATTGTGTAGGTTTTAAGGTTGATGATGAAATATCTAAGCTTGCTTCTCATATCAGTACATTTGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

285

Amino Acids

32.46

Weight (kDa)

6.14

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07600 FvH4_6g07600
rosa_chinensis	RchiOBHm_Chr4g0385781 RchiOBHm_Chr4g0385921
rosa_laevigata	RLG00000010201
rosa_multiflora	Rmu_sc0007400.1_g000010 Rmu_sc0024454.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333520
rosa_rugosa	Rorug03G0302900 Rorug03G0303000
rosa_samantha	Rh4AG007500 Rh4BG005300 Rh4CG008100 Rh4DG007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AccII	CGCG	1 cut(s)	630
AciI	CCGC	2 cut(s)	550, 556
AcsI	RAATTY	2 cut(s)	514, 637
AfaI	GTAC	4 cut(s)	476, 591, 698, 844
AflII	CTTAAG	2 cut(s)	362, 425
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	471, 513
AhdI	GACNNNNNGTC	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	418, 585
AluBI	AGCT	7 cut(s)	239, 367, 543, 705, 744, 766, 826
AluI	AGCT	7 cut(s)	239, 367, 543, 705, 744, 766, 826
Alw26I	GTCTC	2 cut(s)	441, 515
AlwNI	CAGNNNCTG	1 cut(s)	496
ApeKI	GCWGC	3 cut(s)	339, 543, 682
ApoI	RAATTY	2 cut(s)	514, 637
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	2 cut(s)	339, 630
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	351, 530, 669
BccI	CCATC	2 cut(s)	12, 142
BciT130I	CCWGG	2 cut(s)	420, 587
BclI	TGATCA	2 cut(s)	169, 724
BcoDI	GTCTC	2 cut(s)	441, 515
BfaI	CTAG	1 cut(s)	767
BfrI	CTTAAG	2 cut(s)	362, 425
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	3 cut(s)	340, 544, 683
BlsI	GCNGC	3 cut(s)	341, 545, 684
BmcAI	AGTACT	2 cut(s)	476, 698
Bme1390I	CCNGG	2 cut(s)	420, 587
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	420, 587
BmsI	GCATC	1 cut(s)	199
BoxI	GACNNNNGTC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	721
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
BseBI	CCWGG	2 cut(s)	420, 587
BseMII	CTCAG	3 cut(s)	210, 254, 553
BseXI	GCAGC	3 cut(s)	351, 530, 669
BseYI	CCCAGC	1 cut(s)	751
Bsh1236I	CGCG	1 cut(s)	630
BslFI	GGGAC	4 cut(s)	35, 77, 549, 673
BsmAI	GTCTC	2 cut(s)	441, 515
BsmFI	GGGAC	4 cut(s)	35, 77, 549, 673
BsmI	GAATGC	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	169, 594, 724, 733
BspACI	CCGC	2 cut(s)	550, 556
BspCNI	CTCAG	3 cut(s)	211, 253, 552
BspFNI	CGCG	1 cut(s)	630
BspTI	CTTAAG	2 cut(s)	362, 425
BssMI	GATC	4 cut(s)	169, 594, 724, 733
Bst2UI	CCWGG	2 cut(s)	420, 587
Bst4CI	ACNGT	2 cut(s)	41, 358
BstAFI	CTTAAG	2 cut(s)	362, 425
BstAPI	GCANNNNNTGC	1 cut(s)	606
BstC8I	GCNNGC	3 cut(s)	124, 143, 828
BstDEI	CTNAG	4 cut(s)	219, 240, 539, 822
BstFNI	CGCG	1 cut(s)	630
BstHHI	GCGC	2 cut(s)	339, 630
BstKTI	GATC	4 cut(s)	172, 597, 727, 736
BstMAI	GTCTC	2 cut(s)	441, 515
BstMBI	GATC	4 cut(s)	169, 594, 724, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	549, 606
BstNI	CCWGG	2 cut(s)	420, 587
BstNSI	RCATGY	1 cut(s)	278
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	418, 585
BstUI	CGCG	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	351, 530, 669
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	3 cut(s)	124, 143, 828
CaiI	CAGNNNCTG	1 cut(s)	496
CfoI	GCGC	2 cut(s)	339, 630
Csp6I	GTAC	4 cut(s)	475, 590, 697, 843
CviAII	CATG	4 cut(s)	111, 271, 275, 575
CviJI	RGCY	8 cut(s)	126, 239, 367, 543, 705, 744, 766, 826
CviKI_1	RGCY	8 cut(s)	126, 239, 367, 543, 705, 744, 766, 826
CviQI	GTAC	4 cut(s)	475, 590, 697, 843
DdeI	CTNAG	4 cut(s)	219, 240, 539, 822
DpnI	GATC	4 cut(s)	171, 596, 726, 735
DpnII	GATC	4 cut(s)	169, 594, 724, 733
DriI	GACNNNNNGTC	1 cut(s)	229
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	2 cut(s)	418, 585
EcoT22I	ATGCAT	1 cut(s)	276
FaeI	CATG	4 cut(s)	114, 274, 278, 578
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	4 cut(s)	35, 77, 549, 673
FatI	CATG	4 cut(s)	110, 270, 274, 574
FbaI	TGATCA	2 cut(s)	169, 724
Fnu4HI	GCNGC	3 cut(s)	340, 544, 683
Fsp4HI	GCNGC	3 cut(s)	340, 544, 683
FspBI	CTAG	1 cut(s)	767
GlaI	GCGC	2 cut(s)	338, 629
GluI	GCNGC	3 cut(s)	340, 544, 683
GsaI	CCCAGC	1 cut(s)	755
HhaI	GCGC	2 cut(s)	339, 630
Hin1II	CATG	4 cut(s)	114, 274, 278, 578
Hin6I	GCGC	2 cut(s)	337, 628
HinP1I	GCGC	2 cut(s)	337, 628
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	4 cut(s)	230, 267, 537, 582
Hpy166II	GTNNAC	2 cut(s)	44, 184
Hpy188I	TCNGA	3 cut(s)	220, 243, 409
Hpy188III	TCNNGA	3 cut(s)	161, 491, 667
Hpy8I	GTNNAC	2 cut(s)	44, 184
Hpy99I	CGWCG	1 cut(s)	18
HpyCH4III	ACNGT	2 cut(s)	41, 358
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	105, 274, 609, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	549, 606
HpyF3I	CTNAG	4 cut(s)	219, 240, 539, 822
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	114, 274, 278, 578
HspAI	GCGC	2 cut(s)	337, 628
Ksp22I	TGATCA	2 cut(s)	169, 724
Kzo9I	GATC	4 cut(s)	169, 594, 724, 733
Lsp1109I	GCAGC	3 cut(s)	351, 530, 669
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	767
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	446, 716
MalI	GATC	4 cut(s)	171, 596, 726, 735
MboI	GATC	4 cut(s)	169, 594, 724, 733
MboII	GAAGA	3 cut(s)	72, 200, 398
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	733
MluCI	AATT	4 cut(s)	306, 505, 514, 637
MlyI	GAGTC	3 cut(s)	239, 531, 576
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	5 cut(s)	67, 214, 226, 381, 491
Mph1103I	ATGCAT	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	6 cut(s)	29, 363, 426, 570, 801, 856
MslI	CAYNNNNRTG	1 cut(s)	100
MspA1I	CMGCKG	1 cut(s)	543
MspCI	CTTAAG	2 cut(s)	362, 425
MspR9I	CCNGG	2 cut(s)	420, 587
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	600
MvaI	CCWGG	2 cut(s)	420, 587
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	2 cut(s)	549, 606
NdeII	GATC	4 cut(s)	169, 594, 724, 733
NlaIII	CATG	4 cut(s)	114, 274, 278, 578
NmuCI	GTSAC	2 cut(s)	446, 716
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	1 cut(s)	278
PctI	GAATGC	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	267
PflFI	GACNNNGTC	1 cut(s)	526
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	3 cut(s)	341, 545, 684
PleI	GAGTC	3 cut(s)	238, 531, 576
PpsI	GAGTC	3 cut(s)	238, 531, 576
PshAI	GACNNNNGTC	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	418, 585
PspFI	CCCAGC	1 cut(s)	751
PspGI	CCWGG	2 cut(s)	418, 585
PstNI	CAGNNNCTG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	733
PsyI	GACNNNGTC	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	543
RsaI	GTAC	4 cut(s)	476, 591, 698, 844
RsaNI	GTAC	4 cut(s)	475, 590, 697, 843
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	6 cut(s)	29, 363, 426, 570, 801, 856
SatI	GCNGC	3 cut(s)	340, 544, 683
Sau3AI	GATC	4 cut(s)	169, 594, 724, 733
ScaI	AGTACT	2 cut(s)	476, 698
SchI	GAGTC	3 cut(s)	239, 531, 576
ScrFI	CCNGG	2 cut(s)	420, 587
SfaNI	GCATC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	3 cut(s)	362, 425, 700
SmoI	CTYRAG	3 cut(s)	362, 425, 700
Sse9I	AATT	4 cut(s)	306, 505, 514, 637
SsiI	CCGC	2 cut(s)	550, 556
SspMI	CTAG	1 cut(s)	767
StyD4I	CCNGG	2 cut(s)	418, 585
TaaI	ACNGT	2 cut(s)	41, 358
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	635, 668
TasI	AATT	4 cut(s)	306, 505, 514, 637
TatI	WGTACW	3 cut(s)	474, 696, 842
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	6 cut(s)	29, 363, 426, 570, 801, 856
Tru9I	TTAA	6 cut(s)	29, 363, 426, 570, 801, 856
TscAI	CASTG	1 cut(s)	611
TseFI	GTSAC	2 cut(s)	446, 716
TseI	GCWGC	3 cut(s)	339, 543, 682
Tsp45I	GTSAC	2 cut(s)	446, 716
TspDTI	ATGAA	2 cut(s)	259, 828
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	611
Tth111I	GACNNNGTC	1 cut(s)	526
Vha464I	CTTAAG	2 cut(s)	362, 425
XapI	RAATTY	2 cut(s)	514, 637
XceI	RCATGY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	1 cut(s)	767
ZrmI	AGTACT	2 cut(s)	476, 698
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.