Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016871

Physical Location & Seq

Genomic Coordinates Reverse (-)

1383469 .. 1385406

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGGAACTGCTCTATGATGTCCCATTCGTGTGCAAGTCATGGCATAGAGCAAGCCACAATCCATCATGCTGGCAATCTCTCATTTTTCCAGACATTGATCATAATGCTGTTGACGAAGATGAGAATATCAAATATGATGCTTCCTCTGCGGACAATGAGTCCAAACCTCAGAGTTTTGGTGCTTTCTATGACAGATTCATGCATGAATATCAAATTGACAGCGGTCGTTTCTCAATCGGCGGTATTATAAAGGTTGTCATCAAGCGCAGCAACGGACTTCCTACTGTTCTTAAGCTACCTCAAAACTCCACAGAAGAAGTTCTTACGTCTGTTTCAGATGTCTGTCCTGGACTTAAGTTTTTGTCTCTATCGTGTGACTGCAAGTTCTCAATCCTTTCAAAGTACTCCCTCGCAGTTCAGGAACTGATTACGAATTGTACAAATTTGGAGACTTTGTCATTGGAAAGCAGCTGCCACCGCTACCGCAACCAGAGATTTAATCATGTTGCACTCCTGGTACAGATCAGCATTCACTGCAAGAATGTTGTAGATTTGCGCGTGTCGAATTCCCAGCTATGTAAATATGGGACATTCTCGATTGCCACCTTGCTGCCTAAAATAAAGTACTTGAGCTTTAGGAAGTGTGACATTGATCAAAAAGATCTCATCAGCTTACTGCTGAGGTGCAAAGAGCTAGTGCTTTTGGATATGAGAGATTGTGTAGGTTTTAAGGTTGACAATGAAATATCTAAGCTTGCTTCTCATATTAGCACATTTGTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

262

Amino Acids

29.82

Weight (kDa)

6.44

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07600 FvH4_6g07600
rosa_chinensis	RchiOBHm_Chr4g0385781 RchiOBHm_Chr4g0385921
rosa_laevigata	RLG00000010201
rosa_multiflora	Rmu_sc0007400.1_g000010 Rmu_sc0024454.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333520
rosa_rugosa	Rorug03G0302900 Rorug03G0303000
rosa_samantha	Rh4AG007500 Rh4BG005300 Rh4CG008100 Rh4DG007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AccII	CGCG	1 cut(s)	561
AciI	CCGC	5 cut(s)	152, 225, 243, 481, 487
AcsI	RAATTY	2 cut(s)	445, 568
AfaI	GTAC	4 cut(s)	407, 442, 522, 629
AflII	CTTAAG	2 cut(s)	293, 356
AgsI	TTSAA	1 cut(s)	402
AhdI	GACNNNNNGTC	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	349, 516
AleI	CACNNNNGTG	1 cut(s)	779
AluBI	AGCT	7 cut(s)	298, 474, 577, 636, 675, 697, 757
AluI	AGCT	7 cut(s)	298, 474, 577, 636, 675, 697, 757
Alw26I	GTCTC	2 cut(s)	372, 446
AlwNI	CAGNNNCTG	1 cut(s)	427
ApeKI	GCWGC	4 cut(s)	270, 471, 474, 613
ApoI	RAATTY	2 cut(s)	445, 568
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	2 cut(s)	270, 561
BbvCI	CCTCAGC	1 cut(s)	683
BbvI	GCAGC	4 cut(s)	282, 461, 483, 600
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	351, 518
BclI	TGATCA	2 cut(s)	100, 655
BcoDI	GTCTC	2 cut(s)	372, 446
BfaI	CTAG	1 cut(s)	698
BfrI	CTTAAG	2 cut(s)	293, 356
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	4 cut(s)	271, 472, 475, 614
BlsI	GCNGC	4 cut(s)	272, 473, 476, 615
BmcAI	AGTACT	2 cut(s)	407, 629
Bme1390I	CCNGG	2 cut(s)	351, 518
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	351, 518
BmsI	GCATC	1 cut(s)	130
BoxI	GACNNNNGTC	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
BseBI	CCWGG	2 cut(s)	351, 518
BseMII	CTCAG	2 cut(s)	185, 674
BseXI	GCAGC	4 cut(s)	282, 461, 483, 600
BseYI	CCCAGC	1 cut(s)	573
Bsh1236I	CGCG	1 cut(s)	561
Bsh1285I	CGRYCG	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	229
BslFI	GGGAC	2 cut(s)	8, 604
BsmAI	GTCTC	2 cut(s)	372, 446
BsmFI	GGGAC	2 cut(s)	8, 604
BsmI	GAATGC	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	440
Bsp143I	GATC	4 cut(s)	100, 525, 655, 664
BspACI	CCGC	5 cut(s)	152, 225, 243, 481, 487
BspCNI	CTCAG	2 cut(s)	184, 675
BspFNI	CGCG	1 cut(s)	561
BspTI	CTTAAG	2 cut(s)	293, 356
BsrGI	TGTACA	1 cut(s)	440
BssMI	GATC	4 cut(s)	100, 525, 655, 664
Bst2UI	CCWGG	2 cut(s)	351, 518
Bst4CI	ACNGT	1 cut(s)	289
BstAFI	CTTAAG	2 cut(s)	293, 356
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	55, 74, 759
BstDEI	CTNAG	3 cut(s)	171, 683, 753
BstFNI	CGCG	1 cut(s)	561
BstHHI	GCGC	2 cut(s)	270, 561
BstKTI	GATC	4 cut(s)	103, 528, 658, 667
BstMAI	GTCTC	2 cut(s)	372, 446
BstMBI	GATC	4 cut(s)	100, 525, 655, 664
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 480, 537
BstNI	CCWGG	2 cut(s)	351, 518
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	349, 516
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	4 cut(s)	282, 461, 483, 600
BstX2I	RGATCY	1 cut(s)	664
BstXI	CCANNNNNNTGG	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	535
Cac8I	GCNNGC	3 cut(s)	55, 74, 759
CaiI	CAGNNNCTG	1 cut(s)	427
CfoI	GCGC	2 cut(s)	270, 561
Csp6I	GTAC	4 cut(s)	406, 441, 521, 628
CviAII	CATG	5 cut(s)	42, 69, 202, 206, 506
CviJI	RGCY	8 cut(s)	57, 298, 474, 577, 636, 675, 697, 757
CviKI_1	RGCY	8 cut(s)	57, 298, 474, 577, 636, 675, 697, 757
CviQI	GTAC	4 cut(s)	406, 441, 521, 628
DdeI	CTNAG	3 cut(s)	171, 683, 753
DpnI	GATC	4 cut(s)	102, 527, 657, 666
DpnII	GATC	4 cut(s)	100, 525, 655, 664
DriI	GACNNNNNGTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	349, 516
EcoT22I	ATGCAT	1 cut(s)	207
FaeI	CATG	5 cut(s)	45, 72, 205, 209, 509
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	2 cut(s)	8, 604
FatI	CATG	5 cut(s)	41, 68, 201, 205, 505
FbaI	TGATCA	2 cut(s)	100, 655
Fnu4HI	GCNGC	4 cut(s)	271, 472, 475, 614
Fsp4HI	GCNGC	4 cut(s)	271, 472, 475, 614
FspBI	CTAG	1 cut(s)	698
GlaI	GCGC	2 cut(s)	269, 560
GluI	GCNGC	4 cut(s)	271, 472, 475, 614
GsaI	CCCAGC	1 cut(s)	577
HhaI	GCGC	2 cut(s)	270, 561
Hin1II	CATG	5 cut(s)	45, 72, 205, 209, 509
Hin6I	GCGC	2 cut(s)	268, 559
HinP1I	GCGC	2 cut(s)	268, 559
HincII	GTYRAC	2 cut(s)	115, 739
HindII	GTYRAC	2 cut(s)	115, 739
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	2 cut(s)	161, 198
Hpy166II	GTNNAC	2 cut(s)	115, 739
Hpy188I	TCNGA	2 cut(s)	174, 340
Hpy188III	TCNNGA	3 cut(s)	92, 422, 598
Hpy8I	GTNNAC	2 cut(s)	115, 739
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	6 cut(s)	36, 205, 384, 512, 540, 690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 480, 537
HpyF3I	CTNAG	3 cut(s)	171, 683, 753
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	5 cut(s)	45, 72, 205, 209, 509
HspAI	GCGC	2 cut(s)	268, 559
Ksp22I	TGATCA	2 cut(s)	100, 655
Kzo9I	GATC	4 cut(s)	100, 525, 655, 664
LpnPI	CCDG	9 cut(s)	58, 105, 336, 363, 407, 503, 506, 530, 587
Lsp1109I	GCAGC	4 cut(s)	282, 461, 483, 600
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	377, 647
MalI	GATC	4 cut(s)	102, 527, 657, 666
MboI	GATC	4 cut(s)	100, 525, 655, 664
MboII	GAAGA	2 cut(s)	131, 329
MflI	RGATCY	1 cut(s)	664
MluCI	AATT	4 cut(s)	216, 436, 445, 568
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	5 cut(s)	157, 180, 312, 422, 678
Mph1103I	ATGCAT	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	5 cut(s)	294, 357, 501, 732, 787
MslI	CAYNNNNRTG	2 cut(s)	31, 779
MspA1I	CMGCKG	2 cut(s)	225, 474
MspCI	CTTAAG	2 cut(s)	293, 356
MspR9I	CCNGG	2 cut(s)	351, 518
Mva1269I	GAATGC	1 cut(s)	531
MvaI	CCWGG	2 cut(s)	351, 518
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	3 cut(s)	149, 480, 537
NdeII	GATC	4 cut(s)	100, 525, 655, 664
NlaIII	CATG	5 cut(s)	45, 72, 205, 209, 509
NmuCI	GTSAC	2 cut(s)	377, 647
NsiI	ATGCAT	1 cut(s)	207
OliI	CACNNNNGTG	1 cut(s)	779
PctI	GAATGC	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	198
PflFI	GACNNNGTC	1 cut(s)	457
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	272, 473, 476, 615
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	349, 516
PspFI	CCCAGC	1 cut(s)	573
PspGI	CCWGG	2 cut(s)	349, 516
PstNI	CAGNNNCTG	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	664
PsyI	GACNNNGTC	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	474
RsaI	GTAC	4 cut(s)	407, 442, 522, 629
RsaNI	GTAC	4 cut(s)	406, 441, 521, 628
RseI	CAYNNNNRTG	2 cut(s)	31, 779
SaqAI	TTAA	5 cut(s)	294, 357, 501, 732, 787
SatI	GCNGC	4 cut(s)	271, 472, 475, 614
Sau3AI	GATC	4 cut(s)	100, 525, 655, 664
ScaI	AGTACT	2 cut(s)	407, 629
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	351, 518
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	2 cut(s)	31, 779
SmlI	CTYRAG	3 cut(s)	293, 356, 631
SmoI	CTYRAG	3 cut(s)	293, 356, 631
Sse9I	AATT	4 cut(s)	216, 436, 445, 568
SsiI	CCGC	5 cut(s)	152, 225, 243, 481, 487
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	2 cut(s)	349, 516
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	2 cut(s)	566, 599
TasI	AATT	4 cut(s)	216, 436, 445, 568
TatI	WGTACW	3 cut(s)	405, 440, 627
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	5 cut(s)	294, 357, 501, 732, 787
Tru9I	TTAA	5 cut(s)	294, 357, 501, 732, 787
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	2 cut(s)	377, 647
TseI	GCWGC	4 cut(s)	270, 471, 474, 613
Tsp45I	GTSAC	2 cut(s)	377, 647
TspDTI	ATGAA	3 cut(s)	190, 222, 759
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	542
Tth111I	GACNNNGTC	1 cut(s)	457
Vha464I	CTTAAG	2 cut(s)	293, 356
XapI	RAATTY	2 cut(s)	445, 568
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	1 cut(s)	698
ZrmI	AGTACT	2 cut(s)	407, 629
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.