Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016871

Physical Location & Seq

Genomic Coordinates Reverse (-)

64125519 .. 64127228

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCACGCTGCAACTCAGATGGATACACAACGACGATGGGACGAGTTAAACTCTGACTGTTTACTAAACGTGTTTGGAAGACTTGGAATGGAGGAACTACTCTATGGTGTCCCATTCGTGTGCAAGTCATGGCATAGAGCAAGCCACAATCCGTCATGCTGGCAATCTCTCATTTTTCCGGACATTGATCATAATGCTGTTGACGAAGATGAGAATATCGAATCTGATGCTTCCTCTGCGGACAATGAGTCCAAACCTCAGAGTTTTGGTGCTTTCTATGACAGATTCATGCATGTATATTGGATTGACAGCAGTCTTTTCTCAATCGGTGGTATTATAAAGGTTGTCATCAAGCGCAGCAACGGACTTCCTACTGTTCTTAAGCTACCTCAAAACTCCACAGAAGAAGTTCTTACGTCTGTTTCAGATGTGTGTCCTGGACTTAAGTTTTTGTCTCTATCGTGTGACTACAAGTTCTCAATCCTTTCAAAGTACTGCCTTGCAGTTCAGGAACTGATTACGAATTGTACAAATTTGGAGACATTGTCATTGGAAAGCAGTTGCCACCGCTACGGCAACCAGAGATTTAATCATGTTGCACTCCTGGTACAGATCAGCATTCACTGCAAGAATGTTGTAGATTTGCGTGTGTCGAATTCCCAGATATGTAAATATGGGACATCCTCGATTGCCACATTGCTGCCTAAAATAAAGTACTTGAGCTTTAGGAAGTGTGACATTGATCAAAAAGATCTCATCAGCTTACTGCTAAGGTGCAAAGAGCTAGTGCTTTTGGATATGAGAGATTGTGTAGGTTTTAAGGTTGATGATGAAATATCTAAGCTTGCTTCTCATATCAATACATTTGTATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

292

Amino Acids

32.96

Weight (kDa)

5.84

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07600 FvH4_6g07600
rosa_chinensis	RchiOBHm_Chr4g0385781 RchiOBHm_Chr4g0385921
rosa_laevigata	RLG00000010201
rosa_multiflora	Rmu_sc0007400.1_g000010 Rmu_sc0024454.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333520
rosa_rugosa	Rorug03G0302900 Rorug03G0303000
rosa_samantha	Rh4AG007500 Rh4BG005300 Rh4CG008100 Rh4DG007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	338, 874
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	2 cut(s)	239, 568
AcsI	RAATTY	2 cut(s)	532, 655
AfaI	GTAC	4 cut(s)	494, 529, 609, 716
AflII	CTTAAG	2 cut(s)	380, 443
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	489
AhdI	GACNNNNNGTC	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	436, 603
AluBI	AGCT	5 cut(s)	385, 723, 762, 784, 844
AluI	AGCT	5 cut(s)	385, 723, 762, 784, 844
Alw26I	GTCTC	2 cut(s)	459, 533
AlwNI	CAGNNNCTG	1 cut(s)	514
Aor13HI	TCCGGA	1 cut(s)	178
ApeKI	GCWGC	3 cut(s)	8, 357, 700
ApoI	RAATTY	2 cut(s)	532, 655
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	369, 687
BccI	CCATC	2 cut(s)	13, 30
BceAI	ACGGC	1 cut(s)	589
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	2 cut(s)	438, 605
BciVI	GTATCC	1 cut(s)	16
BclI	TGATCA	2 cut(s)	187, 742
BcoDI	GTCTC	2 cut(s)	459, 533
BfaI	CTAG	1 cut(s)	785
BfrI	CTTAAG	2 cut(s)	380, 443
BfuI	GTATCC	1 cut(s)	16
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	3 cut(s)	9, 358, 701
BlsI	GCNGC	3 cut(s)	10, 359, 702
BmcAI	AGTACT	2 cut(s)	494, 716
Bme1390I	CCNGG	2 cut(s)	438, 605
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	438, 605
BmsI	GCATC	1 cut(s)	217
BoxI	GACNNNNGTC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
Bpu10I	CCTNAGC	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	739
BsaWI	WCCGGW	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bse3DI	GCAATG	1 cut(s)	695
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	438, 605
BseGI	GGATG	1 cut(s)	680
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	2 cut(s)	29, 272
BseXI	GCAGC	2 cut(s)	369, 687
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	3 cut(s)	53, 95, 691
BsmAI	GTCTC	2 cut(s)	459, 533
BsmFI	GGGAC	3 cut(s)	53, 95, 691
BsmI	GAATGC	1 cut(s)	618
Bsp13I	TCCGGA	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	527
Bsp143I	GATC	4 cut(s)	187, 612, 742, 751
BspACI	CCGC	2 cut(s)	239, 568
BspCNI	CTCAG	2 cut(s)	28, 271
BspEI	TCCGGA	1 cut(s)	178
BspTI	CTTAAG	2 cut(s)	380, 443
BsrDI	GCAATG	1 cut(s)	695
BsrGI	TGTACA	1 cut(s)	527
BssMI	GATC	4 cut(s)	187, 612, 742, 751
Bst2UI	CCWGG	2 cut(s)	438, 605
Bst4CI	ACNGT	2 cut(s)	59, 376
BstAFI	CTTAAG	2 cut(s)	380, 443
BstAPI	GCANNNNNTGC	1 cut(s)	624
BstAUI	TGTACA	1 cut(s)	527
BstC8I	GCNNGC	4 cut(s)	6, 142, 161, 846
BstDEI	CTNAG	4 cut(s)	15, 258, 770, 840
BstF5I	GGATG	1 cut(s)	680
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	4 cut(s)	190, 615, 745, 754
BstMAI	GTCTC	2 cut(s)	459, 533
BstMBI	GATC	4 cut(s)	187, 612, 742, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 624
BstNI	CCWGG	2 cut(s)	438, 605
BstNSI	RCATGY	1 cut(s)	296
BstPAI	GACNNNNGTC	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	436, 603
BstV1I	GCAGC	2 cut(s)	369, 687
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BsuI	GTATCC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	680
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	622
Cac8I	GCNNGC	4 cut(s)	6, 142, 161, 846
CaiI	CAGNNNCTG	1 cut(s)	514
CfoI	GCGC	1 cut(s)	357
Csp6I	GTAC	4 cut(s)	493, 528, 608, 715
CviAII	CATG	5 cut(s)	129, 156, 289, 293, 593
CviJI	RGCY	6 cut(s)	144, 385, 723, 762, 784, 844
CviKI_1	RGCY	6 cut(s)	144, 385, 723, 762, 784, 844
CviQI	GTAC	4 cut(s)	493, 528, 608, 715
DdeI	CTNAG	4 cut(s)	15, 258, 770, 840
DpnI	GATC	4 cut(s)	189, 614, 744, 753
DpnII	GATC	4 cut(s)	187, 612, 742, 751
DriI	GACNNNNNGTC	1 cut(s)	247
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	2 cut(s)	436, 603
EcoT22I	ATGCAT	1 cut(s)	294
FaeI	CATG	5 cut(s)	132, 159, 292, 296, 596
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	3 cut(s)	53, 95, 691
FatI	CATG	5 cut(s)	128, 155, 288, 292, 592
FbaI	TGATCA	2 cut(s)	187, 742
Fnu4HI	GCNGC	3 cut(s)	9, 358, 701
FokI	GGATG	1 cut(s)	667
Fsp4HI	GCNGC	3 cut(s)	9, 358, 701
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	3 cut(s)	9, 358, 701
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	5 cut(s)	132, 159, 292, 296, 596
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	3 cut(s)	221, 248, 285
HpaII	CCGG	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	62, 202
Hpy188I	TCNGA	5 cut(s)	18, 55, 226, 261, 427
Hpy188III	TCNNGA	2 cut(s)	179, 509
Hpy8I	GTNNAC	2 cut(s)	62, 202
Hpy99I	CGWCG	1 cut(s)	36
HpyCH4III	ACNGT	2 cut(s)	59, 376
HpyCH4IV	ACGT	2 cut(s)	69, 416
HpyCH4V	TGCA	8 cut(s)	4, 11, 123, 292, 503, 599, 627, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 624
HpyF3I	CTNAG	4 cut(s)	15, 258, 770, 840
HpySE526I	ACGT	2 cut(s)	69, 416
Hsp92II	CATG	5 cut(s)	132, 159, 292, 296, 596
HspAI	GCGC	1 cut(s)	355
Kpn2I	TCCGGA	1 cut(s)	178
Ksp22I	TGATCA	2 cut(s)	187, 742
Kzo9I	GATC	4 cut(s)	187, 612, 742, 751
LpnPI	CCDG	9 cut(s)	145, 192, 423, 450, 494, 590, 593, 617, 674
Lsp1109I	GCAGC	2 cut(s)	369, 687
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	2 cut(s)	69, 416
MaeIII	GTNAC	2 cut(s)	464, 734
MalI	GATC	4 cut(s)	189, 614, 744, 753
MboI	GATC	4 cut(s)	187, 612, 742, 751
MboII	GAAGA	3 cut(s)	90, 218, 416
MflI	RGATCY	1 cut(s)	751
MluCI	AATT	3 cut(s)	523, 532, 655
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	5 cut(s)	85, 244, 267, 399, 694
Mph1103I	ATGCAT	1 cut(s)	294
MroI	TCCGGA	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	5 cut(s)	47, 381, 444, 588, 819
MslI	CAYNNNNRTG	1 cut(s)	118
MspCI	CTTAAG	2 cut(s)	380, 443
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	438, 605
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	2 cut(s)	438, 605
MwoI	GCNNNNNNNGC	2 cut(s)	236, 624
NdeII	GATC	4 cut(s)	187, 612, 742, 751
NlaIII	CATG	5 cut(s)	132, 159, 292, 296, 596
NmuCI	GTSAC	2 cut(s)	464, 734
NsiI	ATGCAT	1 cut(s)	294
NspI	RCATGY	1 cut(s)	296
PctI	GAATGC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	221, 285
PflFI	GACNNNGTC	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	3 cut(s)	10, 359, 702
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	312
PsiI	TTATAA	2 cut(s)	338, 874
Psp6I	CCWGG	2 cut(s)	436, 603
PspGI	CCWGG	2 cut(s)	436, 603
PstNI	CAGNNNCTG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	751
PsyI	GACNNNGTC	1 cut(s)	544
RsaI	GTAC	4 cut(s)	494, 529, 609, 716
RsaNI	GTAC	4 cut(s)	493, 528, 608, 715
RseI	CAYNNNNRTG	1 cut(s)	118
SaqAI	TTAA	5 cut(s)	47, 381, 444, 588, 819
SatI	GCNGC	3 cut(s)	9, 358, 701
Sau3AI	GATC	4 cut(s)	187, 612, 742, 751
ScaI	AGTACT	2 cut(s)	494, 716
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	438, 605
SfaNI	GCATC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	118
SmlI	CTYRAG	3 cut(s)	380, 443, 718
SmoI	CTYRAG	3 cut(s)	380, 443, 718
Sse9I	AATT	3 cut(s)	523, 532, 655
SsiI	CCGC	2 cut(s)	239, 568
SspMI	CTAG	1 cut(s)	785
StyD4I	CCNGG	2 cut(s)	436, 603
TaaI	ACNGT	2 cut(s)	59, 376
TaiI	ACGT	2 cut(s)	72, 419
TaqI	TCGA	3 cut(s)	219, 653, 686
TasI	AATT	3 cut(s)	523, 532, 655
TatI	WGTACW	3 cut(s)	492, 527, 714
TfiI	GAWTC	2 cut(s)	221, 285
Tru1I	TTAA	5 cut(s)	47, 381, 444, 588, 819
Tru9I	TTAA	5 cut(s)	47, 381, 444, 588, 819
TscAI	CASTG	1 cut(s)	629
TseFI	GTSAC	2 cut(s)	464, 734
TseI	GCWGC	3 cut(s)	8, 357, 700
Tsp45I	GTSAC	2 cut(s)	464, 734
TspDTI	ATGAA	2 cut(s)	277, 846
TspGWI	ACGGA	2 cut(s)	141, 378
TspRI	CASTG	1 cut(s)	629
Tth111I	GACNNNGTC	1 cut(s)	544
Vha464I	CTTAAG	2 cut(s)	380, 443
XapI	RAATTY	2 cut(s)	532, 655
XceI	RCATGY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	1 cut(s)	785
ZrmI	AGTACT	2 cut(s)	494, 716
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.