Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016871

Physical Location & Seq

Genomic Coordinates Forward (+)

1444453 .. 1445404

Gene Structure 952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG008100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATACACAACGACGATGGGACGAGTTAAACCCTGACTGTTTGCTAAACGTGTTTGGAAGACTTGGAATGGAGGAACTGCTCTATGGTGTCCCATTCGTGTGCAAGGCATGGCATAGAGCAAGCCACAATCCTTCGTGCTGGAAATCTCTCATTTTTCCAGACATTGATCATAATGCTGTTGACGAAGATGAGAATATCAAATATGATGCTTCCTCTGAGGACAATGAGTCCAAACCTCAGAGTTTTGGTGCTTTCTATGACAGATTCATGCATGAATATCAAATTGACAGCGGTCGTTTCTCAATCGGTGGTATTATAAAGGTTGTCATCAAGCGCAGCAACGGACTTGCTACTGTTCTTAAGCTACCTCAAAACTCCACAGAAGAAGTTCTTACGTCTGTTTCAGATGTGTGTCCTGGACTTAAGTTTTTGTCTCTATCGTGTGACTACAAGTTCTCAATCCTTTCAAAGTACTCCCTTGCAGTTCTGGAACTGATTACGAATTGTACAAATTTGGAGACATTGTCATTGGAAAGCAGTTGCCACCGCTACGGCAACCAGAGATTTAATCATGTTGCACTTCTGGTACAGATCAGCATTCACTGCAAGAATGTTGTAGATTTGCGCGTGTCGAATTCCCAGATATGTAAATATGGGACACGCTCGATTACCGCATTGCTGCCTAAAATTAAGTACTTGAGCTTTAGGAAGTGTGACGTTGATCAAAAAGATCTCATCAGCTTACTGCTGAGGTGCAAAGAGCTAGTGCTTTTGGATATGAGAGATTGTGTAGGTTTTAAGGTTGATGATGAAATATCTAAGCTTGCTTCTCATATCAGTACATTTGTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

285

Amino Acids

32.45

Weight (kDa)

6.25

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07600 FvH4_6g07600
rosa_chinensis	RchiOBHm_Chr4g0385781 RchiOBHm_Chr4g0385921
rosa_laevigata	RLG00000010201
rosa_multiflora	Rmu_sc0007400.1_g000010 Rmu_sc0024454.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333520
rosa_rugosa	Rorug03G0302900 Rorug03G0303000
rosa_samantha	Rh4AG007500 Rh4BG005300 Rh4CG008100 Rh4DG007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AccII	CGCG	1 cut(s)	630
AciI	CCGC	3 cut(s)	294, 550, 675
AcsI	RAATTY	2 cut(s)	514, 637
AfaI	GTAC	5 cut(s)	476, 511, 591, 698, 844
AflII	CTTAAG	2 cut(s)	362, 425
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	471
AhdI	GACNNNNNGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	5 cut(s)	367, 705, 744, 766, 826
AluI	AGCT	5 cut(s)	367, 705, 744, 766, 826
Alw26I	GTCTC	2 cut(s)	441, 515
ApeKI	GCWGC	2 cut(s)	339, 682
ApoI	RAATTY	2 cut(s)	514, 637
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	2 cut(s)	339, 630
BbsI	GAAGAC	1 cut(s)	67
BbvCI	CCTCAGC	1 cut(s)	752
BbvI	GCAGC	2 cut(s)	351, 669
BccI	CCATC	1 cut(s)	12
BceAI	ACGGC	1 cut(s)	571
BciT130I	CCWGG	1 cut(s)	420
BclI	TGATCA	2 cut(s)	169, 724
BcoDI	GTCTC	2 cut(s)	441, 515
BfaI	CTAG	1 cut(s)	767
BfrI	CTTAAG	2 cut(s)	362, 425
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	2 cut(s)	340, 683
BlsI	GCNGC	2 cut(s)	341, 684
BmcAI	AGTACT	2 cut(s)	476, 698
Bme1390I	CCNGG	1 cut(s)	420
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	199
BoxI	GACNNNNGTC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	721
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bse3DI	GCAATG	1 cut(s)	677
BseBI	CCWGG	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	3 cut(s)	210, 254, 743
BseXI	GCAGC	2 cut(s)	351, 669
Bsh1236I	CGCG	1 cut(s)	630
Bsh1285I	CGRYCG	1 cut(s)	298
BsiEI	CGRYCG	1 cut(s)	298
BslFI	GGGAC	3 cut(s)	35, 77, 673
BsmAI	GTCTC	2 cut(s)	441, 515
BsmFI	GGGAC	3 cut(s)	35, 77, 673
BsmI	GAATGC	1 cut(s)	600
Bsp1407I	TGTACA	1 cut(s)	509
Bsp143I	GATC	4 cut(s)	169, 594, 724, 733
BspACI	CCGC	3 cut(s)	294, 550, 675
BspCNI	CTCAG	3 cut(s)	211, 253, 744
BspFNI	CGCG	1 cut(s)	630
BspTI	CTTAAG	2 cut(s)	362, 425
BsrDI	GCAATG	1 cut(s)	677
BsrGI	TGTACA	1 cut(s)	509
BssMI	GATC	4 cut(s)	169, 594, 724, 733
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	41, 358
BstAFI	CTTAAG	2 cut(s)	362, 425
BstAPI	GCANNNNNTGC	1 cut(s)	606
BstAUI	TGTACA	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	124, 828
BstDEI	CTNAG	4 cut(s)	219, 240, 752, 822
BstFNI	CGCG	1 cut(s)	630
BstHHI	GCGC	2 cut(s)	339, 630
BstKTI	GATC	4 cut(s)	172, 597, 727, 736
BstMAI	GTCTC	2 cut(s)	441, 515
BstMBI	GATC	4 cut(s)	169, 594, 724, 733
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	606
BstNI	CCWGG	1 cut(s)	420
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	418
BstUI	CGCG	1 cut(s)	630
BstV1I	GCAGC	2 cut(s)	351, 669
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	2 cut(s)	124, 828
CfoI	GCGC	2 cut(s)	339, 630
Csp6I	GTAC	5 cut(s)	475, 510, 590, 697, 843
CviAII	CATG	4 cut(s)	111, 271, 275, 575
CviJI	RGCY	6 cut(s)	126, 367, 705, 744, 766, 826
CviKI_1	RGCY	6 cut(s)	126, 367, 705, 744, 766, 826
CviQI	GTAC	5 cut(s)	475, 510, 590, 697, 843
DdeI	CTNAG	4 cut(s)	219, 240, 752, 822
DpnI	GATC	4 cut(s)	171, 596, 726, 735
DpnII	GATC	4 cut(s)	169, 594, 724, 733
DriI	GACNNNNNGTC	1 cut(s)	229
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	418
EcoT22I	ATGCAT	1 cut(s)	276
FaeI	CATG	4 cut(s)	114, 274, 278, 578
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	3 cut(s)	35, 77, 673
FatI	CATG	4 cut(s)	110, 270, 274, 574
FbaI	TGATCA	2 cut(s)	169, 724
Fnu4HI	GCNGC	2 cut(s)	340, 683
Fsp4HI	GCNGC	2 cut(s)	340, 683
FspBI	CTAG	1 cut(s)	767
GlaI	GCGC	2 cut(s)	338, 629
GluI	GCNGC	2 cut(s)	340, 683
HhaI	GCGC	2 cut(s)	339, 630
Hin1II	CATG	4 cut(s)	114, 274, 278, 578
Hin6I	GCGC	2 cut(s)	337, 628
HinP1I	GCGC	2 cut(s)	337, 628
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	2 cut(s)	230, 267
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	220, 243, 409
Hpy188III	TCNNGA	2 cut(s)	161, 491
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	2 cut(s)	41, 358
HpyCH4IV	ACGT	3 cut(s)	51, 398, 720
HpyCH4V	TGCA	6 cut(s)	105, 274, 485, 581, 609, 759
HpyF10VI	GCNNNNNNNGC	1 cut(s)	606
HpyF3I	CTNAG	4 cut(s)	219, 240, 752, 822
HpySE526I	ACGT	3 cut(s)	51, 398, 720
Hsp92II	CATG	4 cut(s)	114, 274, 278, 578
HspAI	GCGC	2 cut(s)	337, 628
Ksp22I	TGATCA	2 cut(s)	169, 724
Kzo9I	GATC	4 cut(s)	169, 594, 724, 733
LpnPI	CCDG	9 cut(s)	48, 127, 174, 405, 432, 476, 572, 575, 656
Lsp1109I	GCAGC	2 cut(s)	351, 669
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	767
MaeII	ACGT	3 cut(s)	51, 398, 720
MaeIII	GTNAC	2 cut(s)	446, 716
MalI	GATC	4 cut(s)	171, 596, 726, 735
MboI	GATC	4 cut(s)	169, 594, 724, 733
MboII	GAAGA	3 cut(s)	72, 200, 398
MflI	RGATCY	1 cut(s)	733
MluCI	AATT	5 cut(s)	285, 505, 514, 637, 690
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	6 cut(s)	67, 214, 226, 249, 381, 747
Mph1103I	ATGCAT	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	7 cut(s)	29, 363, 426, 570, 693, 801, 856
MslI	CAYNNNNRTG	1 cut(s)	100
MspA1I	CMGCKG	1 cut(s)	294
MspCI	CTTAAG	2 cut(s)	362, 425
MspR9I	CCNGG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	1 cut(s)	606
NdeII	GATC	4 cut(s)	169, 594, 724, 733
NlaIII	CATG	4 cut(s)	114, 274, 278, 578
NmuCI	GTSAC	2 cut(s)	446, 716
NsiI	ATGCAT	1 cut(s)	276
PctI	GAATGC	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	267
PflFI	GACNNNGTC	1 cut(s)	526
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	341, 684
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	733
PsyI	GACNNNGTC	1 cut(s)	526
RsaI	GTAC	5 cut(s)	476, 511, 591, 698, 844
RsaNI	GTAC	5 cut(s)	475, 510, 590, 697, 843
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	7 cut(s)	29, 363, 426, 570, 693, 801, 856
SatI	GCNGC	2 cut(s)	340, 683
Sau3AI	GATC	4 cut(s)	169, 594, 724, 733
ScaI	AGTACT	2 cut(s)	476, 698
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	420
SfaNI	GCATC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	3 cut(s)	362, 425, 700
SmoI	CTYRAG	3 cut(s)	362, 425, 700
Sse9I	AATT	5 cut(s)	285, 505, 514, 637, 690
SsiI	CCGC	3 cut(s)	294, 550, 675
SspMI	CTAG	1 cut(s)	767
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	41, 358
TaiI	ACGT	3 cut(s)	54, 401, 723
TaqI	TCGA	2 cut(s)	635, 668
TasI	AATT	5 cut(s)	285, 505, 514, 637, 690
TatI	WGTACW	4 cut(s)	474, 509, 696, 842
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	7 cut(s)	29, 363, 426, 570, 693, 801, 856
Tru9I	TTAA	7 cut(s)	29, 363, 426, 570, 693, 801, 856
TscAI	CASTG	1 cut(s)	611
TseFI	GTSAC	2 cut(s)	446, 716
TseI	GCWGC	2 cut(s)	339, 682
Tsp45I	GTSAC	2 cut(s)	446, 716
TspDTI	ATGAA	3 cut(s)	259, 291, 828
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	611
Tth111I	GACNNNGTC	1 cut(s)	526
Vha464I	CTTAAG	2 cut(s)	362, 425
XapI	RAATTY	2 cut(s)	514, 637
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	1 cut(s)	767
ZrmI	AGTACT	2 cut(s)	476, 698
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.