RchiOBHm_Chr4g0385921

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016871
Physical Location & Seq
Forward (+)
1553098 .. 1555121
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35932

Sequence Viewer

Length: 789 bp
ATGGAGGAACTGCTCTATGATGTCCCATTTGTGTGCAAGTCATGGCATAGAGCAAGCCACAATCCATCGTGCTGGCAATCTCTCATTTTTCCAGACATTGATCATAATGCTGTTGACGAAGATGAGAATATCAAATATGATGCTTCCTCTGCGGACAATGAGTCCAAACCTCAGAGTTTTGGTGCTTTCTATGACAGATTCATGCATGAATATCAAATTGACAGCGGTCGTTTCTCAATCGGTGGTATTATAAAGGTTGTCATCAAGCGCGGCAACGGACTTGCTACTGTTCTTAAGCTACCTCAAAACTCCACAGAAGAAGTTCTTACGTCTGTTTCAGATGTGTGTCCTGGACTTAAGTTTTTGTCTCTATCGTGTGACTACAAGTTCTCAATCCTTTCAAAGTACTCCCTTGCAGTTCTGGAACTGATTACGAATTGTACAAATTTGGAGACATTGTCATTGGAAAGCAGTTGCCACCGCTACGGCAACCAGAGATTTAATCATGTTGCACTTCTGGTACAGATCAGCATTCACTGCAAGAATGTTGTAGATTTGCGCGTGTCGAATTCCCAGATATGTAAATATGGGACACGCTCGATTACCGCATTGCTGCCTAAAATAAAGTACTTGAGCTTTAGGAAGTGTGACGTTGATCAAAAAGATCTCATCAGCTTACTGCTGAGGTGCAAAGAGCTAGTGCTTTTGGATATGAGAGATTGTGTAGGTTTTAAGGTTGATGATGAAATATCTAAGCTTGCTTCTCATATCAGTACATTTGTCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

262

Amino Acids

29.71

Weight (kDa)

6.24

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AccII CGCG 2 cut(s) 270, 561
AciI CCGC 5 cut(s) 152, 225, 270, 481, 606
AcsI RAATTY 2 cut(s) 445, 568
AfaI GTAC 5 cut(s) 407, 442, 522, 629, 775
AflII CTTAAG 2 cut(s) 293, 356
AgsI TTSAA 1 cut(s) 402
AhdI GACNNNNNGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 5 cut(s) 298, 636, 675, 697, 757
AluI AGCT 5 cut(s) 298, 636, 675, 697, 757
Alw26I GTCTC 2 cut(s) 372, 446
ApeKI GCWGC 1 cut(s) 613
ApoI RAATTY 2 cut(s) 445, 568
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 2 cut(s) 270, 561
BbvCI CCTCAGC 1 cut(s) 683
BbvI GCAGC 1 cut(s) 600
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 502
BciT130I CCWGG 1 cut(s) 351
BclI TGATCA 2 cut(s) 100, 655
BcoDI GTCTC 2 cut(s) 372, 446
BfaI CTAG 1 cut(s) 698
BfrI CTTAAG 2 cut(s) 293, 356
BglII AGATCT 1 cut(s) 664
BisI GCNGC 2 cut(s) 271, 614
BlsI GCNGC 2 cut(s) 272, 615
BmcAI AGTACT 2 cut(s) 407, 629
Bme1390I CCNGG 1 cut(s) 351
BmeRI GACNNNNNGTC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 130
BoxI GACNNNNGTC 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 652
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bse3DI GCAATG 1 cut(s) 608
BseBI CCWGG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 608
BseMII CTCAG 2 cut(s) 185, 674
BseXI GCAGC 1 cut(s) 600
Bsh1236I CGCG 2 cut(s) 270, 561
Bsh1285I CGRYCG 1 cut(s) 229
BsiEI CGRYCG 1 cut(s) 229
BslFI GGGAC 2 cut(s) 8, 604
BsmAI GTCTC 2 cut(s) 372, 446
BsmFI GGGAC 2 cut(s) 8, 604
BsmI GAATGC 1 cut(s) 531
Bsp1407I TGTACA 1 cut(s) 440
Bsp143I GATC 4 cut(s) 100, 525, 655, 664
BspACI CCGC 5 cut(s) 152, 225, 270, 481, 606
BspCNI CTCAG 2 cut(s) 184, 675
BspFNI CGCG 2 cut(s) 270, 561
BspTI CTTAAG 2 cut(s) 293, 356
BsrDI GCAATG 1 cut(s) 608
BsrGI TGTACA 1 cut(s) 440
BssMI GATC 4 cut(s) 100, 525, 655, 664
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 289
BstAFI CTTAAG 2 cut(s) 293, 356
BstAPI GCANNNNNTGC 1 cut(s) 537
BstAUI TGTACA 1 cut(s) 440
BstC8I GCNNGC 3 cut(s) 55, 74, 759
BstDEI CTNAG 3 cut(s) 171, 683, 753
BstFNI CGCG 2 cut(s) 270, 561
BstHHI GCGC 2 cut(s) 270, 561
BstKTI GATC 4 cut(s) 103, 528, 658, 667
BstMAI GTCTC 2 cut(s) 372, 446
BstMBI GATC 4 cut(s) 100, 525, 655, 664
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 2 cut(s) 149, 537
BstNI CCWGG 1 cut(s) 351
BstPAI GACNNNNGTC 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 349
BstUI CGCG 2 cut(s) 270, 561
BstV1I GCAGC 1 cut(s) 600
BstX2I RGATCY 1 cut(s) 664
BstXI CCANNNNNNTGG 1 cut(s) 72
BstYI RGATCY 1 cut(s) 664
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 535
Cac8I GCNNGC 3 cut(s) 55, 74, 759
CfoI GCGC 2 cut(s) 270, 561
Csp6I GTAC 5 cut(s) 406, 441, 521, 628, 774
CviAII CATG 4 cut(s) 42, 202, 206, 506
CviJI RGCY 6 cut(s) 57, 298, 636, 675, 697, 757
CviKI_1 RGCY 6 cut(s) 57, 298, 636, 675, 697, 757
CviQI GTAC 5 cut(s) 406, 441, 521, 628, 774
DdeI CTNAG 3 cut(s) 171, 683, 753
DpnI GATC 4 cut(s) 102, 527, 657, 666
DpnII GATC 4 cut(s) 100, 525, 655, 664
DriI GACNNNNNGTC 1 cut(s) 160
Eam1105I GACNNNNNGTC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 207
FaeI CATG 4 cut(s) 45, 205, 209, 509
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 2 cut(s) 8, 604
FatI CATG 4 cut(s) 41, 201, 205, 505
FbaI TGATCA 2 cut(s) 100, 655
Fnu4HI GCNGC 2 cut(s) 271, 614
Fsp4HI GCNGC 2 cut(s) 271, 614
FspBI CTAG 1 cut(s) 698
GlaI GCGC 2 cut(s) 269, 560
GluI GCNGC 2 cut(s) 271, 614
HhaI GCGC 2 cut(s) 270, 561
Hin1II CATG 4 cut(s) 45, 205, 209, 509
Hin6I GCGC 2 cut(s) 268, 559
HinP1I GCGC 2 cut(s) 268, 559
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 2 cut(s) 161, 198
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 174, 340
Hpy188III TCNNGA 2 cut(s) 92, 422
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 2 cut(s) 329, 651
HpyCH4V TGCA 6 cut(s) 36, 205, 416, 512, 540, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 537
HpyF3I CTNAG 3 cut(s) 171, 683, 753
HpySE526I ACGT 2 cut(s) 329, 651
Hsp92II CATG 4 cut(s) 45, 205, 209, 509
HspAI GCGC 2 cut(s) 268, 559
Ksp22I TGATCA 2 cut(s) 100, 655
Kzo9I GATC 4 cut(s) 100, 525, 655, 664
LpnPI CCDG 8 cut(s) 58, 105, 336, 363, 407, 503, 506, 587
Lsp1109I GCAGC 1 cut(s) 600
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 698
MaeII ACGT 2 cut(s) 329, 651
MaeIII GTNAC 2 cut(s) 377, 647
MalI GATC 4 cut(s) 102, 527, 657, 666
MboI GATC 4 cut(s) 100, 525, 655, 664
MboII GAAGA 2 cut(s) 131, 329
MflI RGATCY 1 cut(s) 664
MluCI AATT 4 cut(s) 216, 436, 445, 568
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 4 cut(s) 157, 180, 312, 678
Mph1103I ATGCAT 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 5 cut(s) 294, 357, 501, 732, 787
MslI CAYNNNNRTG 1 cut(s) 31
MspA1I CMGCKG 1 cut(s) 225
MspCI CTTAAG 2 cut(s) 293, 356
MspR9I CCNGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 2 cut(s) 270, 561
MwoI GCNNNNNNNGC 2 cut(s) 149, 537
NdeII GATC 4 cut(s) 100, 525, 655, 664
NlaIII CATG 4 cut(s) 45, 205, 209, 509
NmuCI GTSAC 2 cut(s) 377, 647
NsiI ATGCAT 1 cut(s) 207
PctI GAATGC 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 198
PflFI GACNNNGTC 1 cut(s) 457
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 2 cut(s) 272, 615
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PshAI GACNNNNGTC 1 cut(s) 225
PsiI TTATAA 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 664
PsyI GACNNNGTC 1 cut(s) 457
RsaI GTAC 5 cut(s) 407, 442, 522, 629, 775
RsaNI GTAC 5 cut(s) 406, 441, 521, 628, 774
RseI CAYNNNNRTG 1 cut(s) 31
SaqAI TTAA 5 cut(s) 294, 357, 501, 732, 787
SatI GCNGC 2 cut(s) 271, 614
Sau3AI GATC 4 cut(s) 100, 525, 655, 664
ScaI AGTACT 2 cut(s) 407, 629
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 351
SfaNI GCATC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 31
SmlI CTYRAG 3 cut(s) 293, 356, 631
SmoI CTYRAG 3 cut(s) 293, 356, 631
Sse9I AATT 4 cut(s) 216, 436, 445, 568
SsiI CCGC 5 cut(s) 152, 225, 270, 481, 606
SspMI CTAG 1 cut(s) 698
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 2 cut(s) 332, 654
TaqI TCGA 2 cut(s) 566, 599
TasI AATT 4 cut(s) 216, 436, 445, 568
TatI WGTACW 4 cut(s) 405, 440, 627, 773
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 5 cut(s) 294, 357, 501, 732, 787
Tru9I TTAA 5 cut(s) 294, 357, 501, 732, 787
TscAI CASTG 1 cut(s) 542
TseFI GTSAC 2 cut(s) 377, 647
TseI GCWGC 1 cut(s) 613
Tsp45I GTSAC 2 cut(s) 377, 647
TspDTI ATGAA 3 cut(s) 190, 222, 759
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 542
Tth111I GACNNNGTC 1 cut(s) 457
Vha464I CTTAAG 2 cut(s) 293, 356
XapI RAATTY 2 cut(s) 445, 568
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 1 cut(s) 698
ZrmI AGTACT 2 cut(s) 407, 629
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.