FvH4_6g07660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013695
Physical Location & Seq
Reverse (-)
4608466 .. 4610843
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07660.t2

Sequence Viewer

Length: 528 bp
ATGGATCATATAAGTTGTAGAGAGAGTGATTTAGAGTTTGATTTGGAAAGTGGTGAGACTGAATCAGGCAGTGAAGAAGATGGAAGTGAAGAGTTCGGTTCCCATGGTAAACATTCCGAGAGATTATTGAATAGGGGAAAGAGCAGATACTTGTTTTTTGAAGGATCAATGGCAGCTAATGATGTTGTAGGCACAAGCAGTAAGGTATCAAATATTGATGAGACTAGGAATGTGATAGAAGGAGGAATTGAGAAGATGGTGGATGAACAGAAAACGAAAGGTGAGAAGCATTCCAAGCCACCTCGGCCTCCTACTGGTCCATTATTACACGCAGCAGATATAGAGTTGGTTAAAGAAATATCAAAGCGTACTAGGATGCGGCGTGCAAGGAGAGCAAGATTGCAGGCATTGAAGAACATGAAAACTGATAGAACATCATCTGCAAATATTAACTTTTTGGCAATAACTGTCACAGCTGTCTTCGGCCTTGTGATAATCTTCCAAGGAGTTTTGGGTGCTCGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.39

Weight (kDa)

6.98

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013695)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g07660 FvH4_6g07660
malus_domestica MD12G1204500.v1.1
prunus_persica Prupe.6G311200_v2.0.a1 Prupe.6G311200_v2.0.a1 Prupe.6G311200_v2.0.a1
pyrus_communis pycom12g19190
rosa_chinensis RchiOBHm_Chr3g0457351
rosa_laevigata RLG00000025233
rosa_multiflora Rmu_sc0005442.1_g000009
rosa_roxburghii Rroxscaffold_6G00421960
rosa_rugosa Rorug03G0019900 Rorug03G0020000
rosa_samantha Rh3AG080200 Rh3BG082000 Rh3CG082300 Rh3DG083700
rosa_wichuraiana Rw3G006900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 379
AclWI GGATC 2 cut(s) 12, 172
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 3 cut(s) 130, 161, 412
AluBI AGCT 2 cut(s) 176, 476
AluI AGCT 2 cut(s) 176, 476
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 2 cut(s) 50, 215
AlwI GGATC 2 cut(s) 12, 172
AoxI GGCC 2 cut(s) 305, 484
ApeKI GCWGC 2 cut(s) 173, 332
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 65, 293
AvaII GGWCC 1 cut(s) 317
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 2 cut(s) 185, 344
BccI CCATC 2 cut(s) 74, 250
BcoDI GTCTC 2 cut(s) 50, 215
BfaI CTAG 2 cut(s) 225, 372
BglI GCCNNNNNGGC 1 cut(s) 304
BisI GCNGC 3 cut(s) 174, 333, 380
BlsI GCNGC 3 cut(s) 175, 334, 381
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 472
BsaJI CCNNGG 3 cut(s) 103, 302, 502
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 319
BseDI CCNNGG 3 cut(s) 103, 302, 502
BseGI GGATG 2 cut(s) 268, 381
BseLI CCNNNNNNNGG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 319
BseXI GCAGC 2 cut(s) 185, 344
BshFI GGCC 2 cut(s) 307, 486
BsiHKAI GWGCWC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 50, 215
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 2 cut(s) 307, 486
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 2 cut(s) 4, 164
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 1 cut(s) 379
BspANI GGCC 2 cut(s) 307, 486
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 2 cut(s) 12, 172
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 3 cut(s) 103, 302, 502
BssMI GATC 2 cut(s) 4, 164
BssSI CACGAG 1 cut(s) 519
BssT1I CCWWGG 2 cut(s) 103, 502
Bst2BI CACGAG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 384, 405
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 268, 381
BstKTI GATC 2 cut(s) 7, 167
BstMAI GTCTC 2 cut(s) 50, 215
BstMBI GATC 2 cut(s) 4, 164
BstMWI GCNNNNNNNGC 3 cut(s) 295, 304, 392
BstV1I GCAGC 2 cut(s) 185, 344
BstV2I GAAGAC 1 cut(s) 472
BsuRI GGCC 2 cut(s) 307, 486
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 268, 381
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 384, 405
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 369
CviAII CATG 2 cut(s) 104, 418
CviJI RGCY 5 cut(s) 176, 298, 307, 476, 486
CviKI_1 RGCY 5 cut(s) 176, 298, 307, 476, 486
CviQI GTAC 1 cut(s) 369
DpnI GATC 2 cut(s) 6, 166
DpnII GATC 2 cut(s) 4, 164
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 103, 502
Eco47I GGWCC 1 cut(s) 317
EcoT14I CCWWGG 2 cut(s) 103, 502
ErhI CCWWGG 2 cut(s) 103, 502
FaeI CATG 2 cut(s) 107, 421
FaiI YATR 6 cut(s) 9, 11, 105, 341, 419, 526
FatI CATG 2 cut(s) 103, 417
Fnu4HI GCNGC 3 cut(s) 174, 333, 380
FokI GGATG 2 cut(s) 275, 388
Fsp4HI GCNGC 3 cut(s) 174, 333, 380
FspBI CTAG 2 cut(s) 225, 372
GluI GCNGC 3 cut(s) 174, 333, 380
HaeIII GGCC 2 cut(s) 307, 486
Hin1II CATG 2 cut(s) 107, 421
HinfI GANTC 1 cut(s) 62
HphI GGTGA 2 cut(s) 65, 293
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 155, 233
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4V TGCA 3 cut(s) 386, 403, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 295, 304, 392
Hsp92II CATG 2 cut(s) 107, 421
Kzo9I GATC 2 cut(s) 4, 164
LpnPI CCDG 3 cut(s) 51, 300, 389
Lsp1109I GCAGC 2 cut(s) 185, 344
LweI GCATC 1 cut(s) 366
MaeI CTAG 2 cut(s) 225, 372
MaeIII GTNAC 1 cut(s) 469
MalI GATC 2 cut(s) 6, 166
MboI GATC 2 cut(s) 4, 164
MboII GAAGA 7 cut(s) 86, 89, 101, 265, 424, 472, 490
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 1 cut(s) 246
MnlI CCTC 3 cut(s) 236, 312, 318
MseI TTAA 2 cut(s) 351, 450
MspA1I CMGCKG 1 cut(s) 476
Mva1269I GAATGC 1 cut(s) 289
MwoI GCNNNNNNNGC 3 cut(s) 295, 304, 392
NcoI CCATGG 1 cut(s) 103
NdeII GATC 2 cut(s) 4, 164
NlaIII CATG 2 cut(s) 107, 421
NlaIV GGNNCC 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 469
PctI GAATGC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 3 cut(s) 175, 334, 381
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 351, 450
SatI GCNGC 3 cut(s) 174, 333, 380
Sau3AI GATC 2 cut(s) 4, 164
Sau96I GGNCC 1 cut(s) 317
SduI GDGCHC 1 cut(s) 520
SetI ASST 5 cut(s) 178, 207, 283, 304, 478
SfaNI GCATC 1 cut(s) 366
SinI GGWCC 1 cut(s) 317
Sse9I AATT 1 cut(s) 246
SsiI CCGC 1 cut(s) 379
SspI AATATT 2 cut(s) 214, 448
SspMI CTAG 2 cut(s) 225, 372
StyI CCWWGG 2 cut(s) 103, 502
TaaI ACNGT 1 cut(s) 469
TasI AATT 1 cut(s) 246
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 351, 450
Tru9I TTAA 2 cut(s) 351, 450
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 2 cut(s) 173, 332
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 2 cut(s) 279, 434
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 317
XspI CTAG 2 cut(s) 225, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.