Rw3G006900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013695
Physical Location & Seq
Reverse (-)
6459983 .. 6461288
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G006900.1

Sequence Viewer

Length: 540 bp
ATGGATCATATAGGTTCTAGAGAATGTGATCTGGAGTTTGACTTGGAAAGTGGTGAGACTGAATCCAGCAGTGAAGAAGATGGAAGTGAAGAGTCCGGTTCCCATGGTAAACATTTCAATAAATTATTGAATAGGGGAAGAAGTGGATACTTGTGTATTGAAGGATCAATAACAGCTAATGATGTTGTAGAAAGCAATAAGGTATCAAATATGGATGAGACTAGGAATGTGATAGAAGGAGGAATTGAGAAGAGAATGGTGGATAAACAGAAAATGAAAGGCTCTGAGAAGCATCCCAAGCCACCTAGGCCTCCTACGGGTCCATCATTACATGCAGCCGATATAGAGTTGGTTAAAGAAATTTCAAAGCATACTAGGTTGCGGCGTGCAAGGAGAGAAAGACTGAAAGCATTGAAGAATATGAAAACTGATAGAAGTCATAGAACATCATCAGCAAATATCAACTTTTTGGCAATAATCATCACAGCTATCTTCTTCTTTGTGATAATCTTCCAAGGAGTTTTGGGTGCTCGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.05

Weight (kDa)

8.55

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013695)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g07660 FvH4_6g07660
malus_domestica MD12G1204500.v1.1
prunus_persica Prupe.6G311200_v2.0.a1 Prupe.6G311200_v2.0.a1 Prupe.6G311200_v2.0.a1
pyrus_communis pycom12g19190
rosa_chinensis RchiOBHm_Chr3g0457351
rosa_laevigata RLG00000025233
rosa_multiflora Rmu_sc0005442.1_g000009
rosa_roxburghii Rroxscaffold_6G00421960
rosa_rugosa Rorug03G0019900 Rorug03G0020000
rosa_samantha Rh3AG080200 Rh3BG082000 Rh3CG082300 Rh3DG083700
rosa_wichuraiana Rw3G006900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 382
AclWI GGATC 2 cut(s) 12, 172
AcsI RAATTY 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 5 cut(s) 118, 130, 161, 366, 415
AluBI AGCT 2 cut(s) 176, 488
AluI AGCT 2 cut(s) 176, 488
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 2 cut(s) 50, 212
AlwI GGATC 2 cut(s) 12, 172
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 360
AspA2I CCTAGG 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 320
AvrII CCTAGG 1 cut(s) 305
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BauI CACGAG 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 1 cut(s) 347
BccI CCATC 2 cut(s) 74, 331
BciVI GTATCC 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 50, 212
BfaI CTAG 4 cut(s) 18, 222, 306, 375
BfuI GTATCC 1 cut(s) 140
BglI GCCNNNNNGGC 1 cut(s) 307
BisI GCNGC 2 cut(s) 336, 383
BlnI CCTAGG 1 cut(s) 305
BlsI GCNGC 2 cut(s) 337, 384
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 2 cut(s) 100, 321
BmsI GCATC 1 cut(s) 301
BpmI CTGGAG 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 103, 305, 514
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 317
BseDI CCNNGG 3 cut(s) 103, 305, 514
BseGI GGATG 2 cut(s) 220, 292
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 532
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 50, 212
BsnI GGCC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 532
Bsp143I GATC 3 cut(s) 4, 28, 164
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 1 cut(s) 382
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 100, 321
BspPI GGATC 2 cut(s) 12, 172
BssECI CCNNGG 3 cut(s) 103, 305, 514
BssMI GATC 3 cut(s) 4, 28, 164
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 3 cut(s) 103, 305, 514
Bst2BI CACGAG 1 cut(s) 531
Bst6I CTCTTC 2 cut(s) 84, 245
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 220, 292
BstKTI GATC 3 cut(s) 7, 31, 167
BstMAI GTCTC 2 cut(s) 50, 212
BstMBI GATC 3 cut(s) 4, 28, 164
BstMWI GCNNNNNNNGC 2 cut(s) 298, 307
BstNSI RCATGY 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 347
BsuI GTATCC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 220, 292
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 320
CviAII CATG 2 cut(s) 104, 332
CviJI RGCY 6 cut(s) 176, 282, 301, 310, 338, 488
CviKI_1 RGCY 6 cut(s) 176, 282, 301, 310, 338, 488
DdeI CTNAG 1 cut(s) 285
DpnI GATC 3 cut(s) 6, 30, 166
DpnII GATC 3 cut(s) 4, 28, 164
Eam1104I CTCTTC 2 cut(s) 84, 245
EarI CTCTTC 2 cut(s) 84, 245
Eco130I CCWWGG 3 cut(s) 103, 305, 514
Eco147I AGGCCT 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 320
EcoT14I CCWWGG 3 cut(s) 103, 305, 514
ErhI CCWWGG 3 cut(s) 103, 305, 514
FaeI CATG 2 cut(s) 107, 335
FatI CATG 2 cut(s) 103, 331
Fnu4HI GCNGC 2 cut(s) 336, 383
FokI GGATG 2 cut(s) 227, 279
Fsp4HI GCNGC 2 cut(s) 336, 383
FspBI CTAG 4 cut(s) 18, 222, 306, 375
GluI GCNGC 2 cut(s) 336, 383
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 96
Hin1II CATG 2 cut(s) 107, 335
HinfI GANTC 2 cut(s) 62, 92
HpaII CCGG 1 cut(s) 96
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 18, 32
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 155, 230
HpyCH4V TGCA 2 cut(s) 335, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 307
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 2 cut(s) 107, 335
Kzo9I GATC 3 cut(s) 4, 28, 164
LpnPI CCDG 3 cut(s) 17, 79, 109
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 301
MaeI CTAG 4 cut(s) 18, 222, 306, 375
MalI GATC 3 cut(s) 6, 30, 166
MboI GATC 3 cut(s) 4, 28, 164
MboII GAAGA 9 cut(s) 86, 89, 101, 150, 262, 427, 484, 487, 502
MhlI GDGCHC 1 cut(s) 532
MluCI AATT 3 cut(s) 122, 243, 360
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 2 cut(s) 233, 321
MseI TTAA 1 cut(s) 354
MspI CCGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 298, 307
NcoI CCATGG 1 cut(s) 103
NdeII GATC 3 cut(s) 4, 28, 164
NlaIII CATG 2 cut(s) 107, 335
NlaIV GGNNCC 2 cut(s) 100, 321
NspI RCATGY 1 cut(s) 335
PceI AGGCCT 1 cut(s) 310
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 337, 384
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 100, 321
PspPI GGNCC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 2 cut(s) 336, 383
Sau3AI GATC 3 cut(s) 4, 28, 164
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 532
SetI ASST 6 cut(s) 16, 178, 204, 307, 380, 490
SfaNI GCATC 1 cut(s) 301
SinI GGWCC 1 cut(s) 320
Sse9I AATT 3 cut(s) 122, 243, 360
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 1 cut(s) 382
SspMI CTAG 4 cut(s) 18, 222, 306, 375
StuI AGGCCT 1 cut(s) 310
StyI CCWWGG 3 cut(s) 103, 305, 514
TasI AATT 3 cut(s) 122, 243, 360
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 290, 437
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 320
XapI RAATTY 1 cut(s) 360
XbaI TCTAGA 1 cut(s) 17
XceI RCATGY 1 cut(s) 335
XmaJI CCTAGG 1 cut(s) 305
XspI CTAG 4 cut(s) 18, 222, 306, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.