Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013695

Physical Location & Seq

Genomic Coordinates Reverse (-)

6425744 .. 6427077

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG080200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCATGTAATGGATCATATAGGTTCTAGAGAATGTGATCTGGAGTTTGACTTGGAAAGTGGTGAGACTGAATCCAGCAGTGAAGAAGATGGAAGTGAAGAGTCCGGTTCCCATGGTAAACATTTCAATAAATTATTGAATAGGGGAAGAAGTGGATACTTGTGTATTGAAGGATCAATAACAGCTAATGATGTTGTAGAAAGCAATAAGGTATCAATTATTGATGAGACTAGGAATGTGATAGAAGGAGGAATTGAGAAGAGAATGGTGGATAAACAGAAAATGAAAGGCTCTGAGAAGCATCCCAAGCCACCTAGGCCTCCTACGGGTCCATCATTACATGCAGCCGATATAGAGTTGGTTAAAGAAATTTCAAAGCATACTAGGTTGCGGCGTGCAAGGAGAGAAAGACTGAAAGCATTGAAGAATATGAAAACTGATAGAAGTCATAGAACATCATCAGCAAATATCAACTTTTTGGCAATAATCATCACAGCTATCTTCTTCTTTGTGATAATCTTCCAAGGAGTTTTGGGTGCTCGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.39

Weight (kDa)

8.55

Isoelectric Point (pI)

64.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07660 FvH4_6g07660
malus_domestica	MD12G1204500.v1.1
prunus_persica	Prupe.6G311200_v2.0.a1 Prupe.6G311200_v2.0.a1 Prupe.6G311200_v2.0.a1
pyrus_communis	pycom12g19190
rosa_chinensis	RchiOBHm_Chr3g0457351
rosa_laevigata	RLG00000025233
rosa_multiflora	Rmu_sc0005442.1_g000009
rosa_roxburghii	Rroxscaffold_6G00421960
rosa_rugosa	Rorug03G0019900 Rorug03G0020000
rosa_samantha	Rh3AG080200 Rh3BG082000 Rh3CG082300 Rh3DG083700
rosa_wichuraiana	Rw3G006900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	391
AclWI	GGATC	2 cut(s)	21, 181
AcsI	RAATTY	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	5 cut(s)	127, 139, 170, 375, 424
AluBI	AGCT	2 cut(s)	185, 497
AluI	AGCT	2 cut(s)	185, 497
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	2 cut(s)	59, 221
AlwI	GGATC	2 cut(s)	21, 181
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	369
AspA2I	CCTAGG	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	329
AvrII	CCTAGG	1 cut(s)	314
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BauI	CACGAG	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	2 cut(s)	83, 340
BciVI	GTATCC	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	59, 221
BfaI	CTAG	4 cut(s)	27, 231, 315, 384
BfuI	GTATCC	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	316
BisI	GCNGC	2 cut(s)	345, 392
BlnI	CCTAGG	1 cut(s)	314
BlsI	GCNGC	2 cut(s)	346, 393
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	109, 330
BmsI	GCATC	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	112, 314, 523
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
BseDI	CCNNGG	3 cut(s)	112, 314, 523
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	2 cut(s)	59, 221
BsnI	GGCC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	3 cut(s)	13, 37, 173
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	109, 330
BspPI	GGATC	2 cut(s)	21, 181
BssECI	CCNNGG	3 cut(s)	112, 314, 523
BssMI	GATC	3 cut(s)	13, 37, 173
BssSI	CACGAG	1 cut(s)	540
BssT1I	CCWWGG	3 cut(s)	112, 314, 523
Bst2BI	CACGAG	1 cut(s)	540
Bst6I	CTCTTC	2 cut(s)	93, 254
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	3 cut(s)	16, 40, 176
BstMAI	GTCTC	2 cut(s)	59, 221
BstMBI	GATC	3 cut(s)	13, 37, 173
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 316
BstNSI	RCATGY	2 cut(s)	8, 344
BstV1I	GCAGC	1 cut(s)	356
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	329
CviAII	CATG	3 cut(s)	5, 113, 341
CviJI	RGCY	6 cut(s)	185, 291, 310, 319, 347, 497
CviKI_1	RGCY	6 cut(s)	185, 291, 310, 319, 347, 497
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	3 cut(s)	15, 39, 175
DpnII	GATC	3 cut(s)	13, 37, 173
Eam1104I	CTCTTC	2 cut(s)	93, 254
EarI	CTCTTC	2 cut(s)	93, 254
Eco130I	CCWWGG	3 cut(s)	112, 314, 523
Eco147I	AGGCCT	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	329
EcoT14I	CCWWGG	3 cut(s)	112, 314, 523
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	112, 314, 523
FaeI	CATG	3 cut(s)	8, 116, 344
FatI	CATG	3 cut(s)	4, 112, 340
Fnu4HI	GCNGC	2 cut(s)	345, 392
FokI	GGATG	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	345, 392
FspBI	CTAG	4 cut(s)	27, 231, 315, 384
GluI	GCNGC	2 cut(s)	345, 392
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	3 cut(s)	8, 116, 344
HinfI	GANTC	2 cut(s)	71, 101
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	2 cut(s)	27, 41
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	164, 239
HpyCH4V	TGCA	3 cut(s)	4, 344, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 316
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	8, 116, 344
Kzo9I	GATC	3 cut(s)	13, 37, 173
LpnPI	CCDG	3 cut(s)	26, 88, 118
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	4 cut(s)	27, 231, 315, 384
MalI	GATC	3 cut(s)	15, 39, 175
MboI	GATC	3 cut(s)	13, 37, 173
MboII	GAAGA	9 cut(s)	95, 98, 110, 159, 271, 436, 493, 496, 511
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	4 cut(s)	131, 216, 252, 369
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	2 cut(s)	242, 330
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	363
MspI	CCGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	307, 316
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	3 cut(s)	13, 37, 173
NlaIII	CATG	3 cut(s)	8, 116, 344
NlaIV	GGNNCC	2 cut(s)	109, 330
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 344
PceI	AGGCCT	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	346, 393
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	109, 330
PspPI	GGNCC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	345, 392
Sau3AI	GATC	3 cut(s)	13, 37, 173
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	541
SetI	ASST	6 cut(s)	25, 187, 213, 316, 389, 499
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	329
Sse9I	AATT	4 cut(s)	131, 216, 252, 369
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	1 cut(s)	391
SspMI	CTAG	4 cut(s)	27, 231, 315, 384
StuI	AGGCCT	1 cut(s)	319
StyI	CCWWGG	3 cut(s)	112, 314, 523
TasI	AATT	4 cut(s)	131, 216, 252, 369
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	299, 446
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	369
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	2 cut(s)	8, 344
XmaJI	CCTAGG	1 cut(s)	314
XspI	CTAG	4 cut(s)	27, 231, 315, 384
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.