Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009630

Physical Location & Seq

Genomic Coordinates Reverse (-)

4704105 .. 4708394

Gene Structure 4290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTTGCAGTGCGTATTTCTGCTATCCGATTCGGGTGAGGTAATGCTGGAGAAACAGCTAACTGGGCAGCGTGTGGACCGCTCAATATGTGTATGGTTCTGGGAACAGGCCATTTCTCAAGGTGATTCCTCCAAGCTCCAACCAGTAATTGCTTCACCAACACATTACCTTTTCCAAATTCTTCGTGAGGGGATAACATTTTTAGCTTGTACCCAAGTTGAAATGCCACCTCTGATGGGCATTGAGTTCCTGTGCAGGGTGGCCGATGTCCTCACAGATTATCTTGGCAGCTTGAATGAAGACTTGATAAAAGATAACTTCGTCATCGTTTATGAGCTTCTGGATGAGATGATTGACAATGGCTTCCCTCTCACTACGGAACCTAATATTCTGAGAGAGATGATTGCTCCACCAAATCTTGTCAACAAGATGTTGAGTGTTGTGACAGGCAGCAGTTCTAACATGAGTGATACGCTTCCAGGTGCAACATCATCTCTGATTCCATGGAGAACAACAGATCCGAAATACGCTCACAATGAAGTTTATGTTGATCTTGTTGAAGAAATAGATACAATAATAAACAGGGATGGGGTCATGGTGAAATGTGAGATATATGGTGAAGTTCAAGTGAACTCCCATTTATCCGGTGTGCCTGATTTGACTCTTTCCTTTTCAAACCCTTCTATTCTTGATGATGTAAGATTCCATCCATGTGTTCGGTTTCGACCTTGGGAATCCCAGCAAATTCTGTCATTTGTGCCTCCTGACGGACAGTTTAAGCTTATGAGTTACAGGGTTAGAAAGTTGAAAAGTACTCCAATCTATGTAAAGCCACAGCTGACCTCTGATGCTGGAACATGTCGTGTTAGTGTAATGGTTGGAATACGAAATGATCCTGGAAAGACCATTGATTCAATAACTGTGCAATTTCAACTGCCTCCATGTATTTTATCAGCTGATTTGACTTCAAATCATGGAACAGTAAACATTCTTGCAAATAAGATCTGTTCATGGTCAATCGGGCGTATTCCTAAAGATAAAACCCCTTCAATGTCTGGAACATTAGTGCTTGAGACAGGATTAGAGCGCCTTCATGTGTTCCCCACATTTCAAGCGAGTTTTAGGATCATGGGTGTTGCTCTCTCCGGCTTGCAGATAGATAAGCTGGATTTGAGGAATCTACCAAATCGAACATACAAGGGATTTCGAGCACTCACTAAAGCAGGGCAATTTGAAGTGAGGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008088 GO:0008089 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010970 GO:0016192 GO:0030705 GO:0046907 GO:0047496 GO:0048489 GO:0048490 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0097479 GO:0097480 GO:0098930 GO:0099003 GO:0099111 GO:0099514 GO:0099517 GO:0099518

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 ko04142 map04137 map04139 map04142

Pfam Domains

Protein Families

Adap_comp_sub

Protein Analysis

416

Amino Acids

46.4

Weight (kDa)

5.5

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	167 - 414	4.3e-70	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56590
fragaria_vesca	FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890
malus_domestica	MD04G1191100.v1.1
prunus_persica	Prupe.6G309600_v2.0.a1 Prupe.6G309600_v2.0.a1 Prupe.6G309600_v2.0.a1
pyrus_communis	pycom04g16860
rosa_chinensis	RchiOBHm_Chr3g0457601
rosa_laevigata	RLG00000025206
rosa_multiflora	Rmu_sc0005321.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421690
rosa_rugosa	Rorug03G0022000
rosa_samantha	Rh3AG082400 Rh3BG084700 Rh3CG084900 Rh3DG086100
rosa_wichuraiana	Rw3G007080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	81
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	3 cut(s)	512, 887, 1133
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	177, 744
AfaI	GTAC	2 cut(s)	211, 814
AfiI	CCNNNNNNNGG	3 cut(s)	236, 256, 767
AflIII	ACRYGT	1 cut(s)	857
AjnI	CCWGG	2 cut(s)	478, 895
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	9 cut(s)	58, 136, 206, 291, 337, 781, 838, 956, 1165
AluI	AGCT	9 cut(s)	58, 136, 206, 291, 337, 781, 838, 956, 1165
Alw21I	GWGCWC	1 cut(s)	1213
Alw26I	GTCTC	1 cut(s)	1067
AlwI	GGATC	3 cut(s)	512, 887, 1133
AoxI	GGCC	2 cut(s)	108, 261
ApeKI	GCWGC	3 cut(s)	67, 288, 450
ApoI	RAATTY	2 cut(s)	177, 744
AspLEI	GCGC	1 cut(s)	1089
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	5 cut(s)	47, 134, 147, 610, 629
AvaII	GGWCC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	1213
BbvI	GCAGC	3 cut(s)	79, 300, 462
BccI	CCATC	3 cut(s)	229, 581, 714
BciT130I	CCWGG	2 cut(s)	480, 897
BcoDI	GTCTC	1 cut(s)	1067
BfoI	RGCGCY	1 cut(s)	1090
BglII	AGATCT	1 cut(s)	1002
BisI	GCNGC	3 cut(s)	68, 289, 451
BlsI	GCNGC	3 cut(s)	69, 290, 452
BmcAI	AGTACT	1 cut(s)	814
Bme1390I	CCNGG	2 cut(s)	480, 897
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	2 cut(s)	480, 897
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	838
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	102, 1091
BsaJI	CCNNGG	2 cut(s)	503, 728
BsaWI	WCCGGW	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 256, 767
Bse1I	ACTGG	2 cut(s)	67, 143
BseBI	CCWGG	2 cut(s)	480, 897
BseDI	CCNNGG	2 cut(s)	503, 728
BseGI	GGATG	3 cut(s)	349, 592, 706
BseLI	CCNNNNNNNGG	3 cut(s)	236, 256, 767
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	67, 143
BseXI	GCAGC	3 cut(s)	79, 300, 462
BseYI	CCCAGC	1 cut(s)	738
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	110, 263
BsiHKAI	GWGCWC	1 cut(s)	1213
BsiSI	CCGG	2 cut(s)	645, 1146
BslI	CCNNNNNNNGG	3 cut(s)	236, 256, 767
BsmAI	GTCTC	1 cut(s)	1067
BsnI	GGCC	2 cut(s)	110, 263
Bsp1286I	GDGCHC	1 cut(s)	1213
Bsp143I	GATC	5 cut(s)	517, 550, 892, 1002, 1125
Bsp19I	CCATGG	1 cut(s)	503
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	110, 263
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	3 cut(s)	512, 887, 1133
BsrBI	CCGCTC	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	67, 143
BssECI	CCNNGG	2 cut(s)	503, 728
BssMI	GATC	5 cut(s)	517, 550, 892, 1002, 1125
BssT1I	CCWWGG	2 cut(s)	503, 728
Bst2UI	CCWGG	2 cut(s)	480, 897
Bst4CI	ACNGT	3 cut(s)	774, 922, 982
BstC8I	GCNNGC	1 cut(s)	1151
BstDEI	CTNAG	1 cut(s)	392
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	3 cut(s)	349, 592, 706
BstH2I	RGCGCY	1 cut(s)	1090
BstHHI	GCGC	1 cut(s)	1089
BstKTI	GATC	5 cut(s)	520, 553, 895, 1005, 1128
BstMAI	GTCTC	1 cut(s)	1067
BstMBI	GATC	5 cut(s)	517, 550, 892, 1002, 1125
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	2 cut(s)	480, 897
BstNSI	RCATGY	1 cut(s)	861
BstSCI	CCNGG	2 cut(s)	478, 895
BstV1I	GCAGC	3 cut(s)	79, 300, 462
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	517, 1002
BstYI	RGATCY	2 cut(s)	517, 1002
BsuRI	GGCC	2 cut(s)	110, 263
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	3 cut(s)	349, 592, 706
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	1151
CfoI	GCGC	1 cut(s)	1089
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	210, 813
CviQI	GTAC	2 cut(s)	210, 813
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	5 cut(s)	519, 552, 894, 1004, 1127
DpnII	GATC	5 cut(s)	517, 550, 892, 1002, 1125
EaeI	YGGCCR	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	503, 728
Eco47I	GGWCC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	478, 895
EcoT14I	CCWWGG	2 cut(s)	503, 728
ErhI	CCWWGG	2 cut(s)	503, 728
Fnu4HI	GCNGC	3 cut(s)	68, 289, 451
FokI	GGATG	3 cut(s)	356, 599, 693
Fsp4HI	GCNGC	3 cut(s)	68, 289, 451
GlaI	GCGC	1 cut(s)	1088
GluI	GCNGC	3 cut(s)	68, 289, 451
GsaI	CCCAGC	1 cut(s)	742
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	1090
HaeIII	GGCC	2 cut(s)	110, 263
HapII	CCGG	2 cut(s)	645, 1146
HhaI	GCGC	1 cut(s)	1089
Hin6I	GCGC	1 cut(s)	1087
HinP1I	GCGC	1 cut(s)	1087
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	8 cut(s)	29, 125, 499, 661, 702, 734, 911, 1177
HpaII	CCGG	2 cut(s)	645, 1146
HphI	GGTGA	5 cut(s)	47, 134, 147, 610, 629
Hpy166II	GTNNAC	4 cut(s)	76, 424, 631, 985
Hpy188I	TCNGA	6 cut(s)	28, 234, 393, 498, 522, 847
Hpy188III	TCNNGA	5 cut(s)	185, 341, 689, 764, 1056
Hpy8I	GTNNAC	4 cut(s)	76, 424, 631, 985
HpyAV	CCTTC	3 cut(s)	690, 1056, 1100
HpyCH4III	ACNGT	3 cut(s)	774, 922, 982
HpyCH4V	TGCA	6 cut(s)	7, 255, 485, 925, 995, 1153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	392
HspAI	GCGC	1 cut(s)	1087
Kzo9I	GATC	5 cut(s)	517, 550, 892, 1002, 1125
LmnI	GCTCC	2 cut(s)	141, 412
Lsp1109I	GCAGC	3 cut(s)	79, 300, 462
LweI	GCATC	1 cut(s)	838
MaeIII	GTNAC	2 cut(s)	442, 788
MalI	GATC	5 cut(s)	519, 552, 894, 1004, 1127
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	5 cut(s)	517, 550, 892, 1002, 1125
MboII	GAAGA	3 cut(s)	173, 311, 572
MflI	RGATCY	2 cut(s)	517, 1002
MhlI	GDGCHC	1 cut(s)	1213
MluCI	AATT	5 cut(s)	147, 177, 744, 926, 1229
MlyI	GAGTC	1 cut(s)	655
MmeI	TCCRAC	2 cut(s)	163, 859
MseI	TTAA	1 cut(s)	777
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	2 cut(s)	838, 956
MspI	CCGG	2 cut(s)	645, 1146
MspR9I	CCNGG	2 cut(s)	480, 897
MvaI	CCWGG	2 cut(s)	480, 897
MwoI	GCNNNNNNNGC	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	503
NdeII	GATC	5 cut(s)	517, 550, 892, 1002, 1125
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	861
PciI	ACATGT	1 cut(s)	857
PfeI	GAWTC	7 cut(s)	29, 125, 499, 702, 734, 911, 1177
PfoI	TCCNGGA	1 cut(s)	895
PkrI	GCNGC	3 cut(s)	69, 290, 452
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PscI	ACATGT	1 cut(s)	857
Psp6I	CCWGG	2 cut(s)	478, 895
PspFI	CCCAGC	1 cut(s)	738
PspGI	CCWGG	2 cut(s)	478, 895
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	517, 1002
PvuII	CAGCTG	2 cut(s)	838, 956
RsaI	GTAC	2 cut(s)	211, 814
RsaNI	GTAC	2 cut(s)	210, 813
RseI	CAYNNNNRTG	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	3 cut(s)	68, 289, 451
Sau3AI	GATC	5 cut(s)	517, 550, 892, 1002, 1125
Sau96I	GGNCC	1 cut(s)	76
ScaI	AGTACT	1 cut(s)	814
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	2 cut(s)	480, 897
SduI	GDGCHC	1 cut(s)	1213
SfaNI	GCATC	1 cut(s)	838
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	2 cut(s)	117, 1070
SmoI	CTYRAG	2 cut(s)	117, 1070
Sse9I	AATT	5 cut(s)	147, 177, 744, 926, 1229
SsiI	CCGC	1 cut(s)	79
SspI	AATATT	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	478, 895
StyI	CCWWGG	2 cut(s)	503, 728
TaaI	ACNGT	3 cut(s)	774, 922, 982
TaqI	TCGA	3 cut(s)	724, 1189, 1207
TasI	AATT	5 cut(s)	147, 177, 744, 926, 1229
TatI	WGTACW	1 cut(s)	812
TfiI	GAWTC	7 cut(s)	29, 125, 499, 702, 734, 911, 1177
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	3 cut(s)	67, 288, 450
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	312, 552, 999, 1082
TspGWI	ACGGA	2 cut(s)	392, 783
TspRI	CASTG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	2 cut(s)	177, 744
XceI	RCATGY	1 cut(s)	861
ZrmI	AGTACT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.