Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009630

Physical Location & Seq

Genomic Coordinates Forward (+)

28079070 .. 28082061

Gene Structure 2992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1191100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTTGCAGTGCATATTTCTGCTATCGGATTCTGGTGAGGTAATGCTGGAGAAACAACTTACTGGGCAGCGTGTGGACCGTTCGATATGCACATGGTTCTGGGAGCATACGGTTTCTCAAGGTGATTCCCCCAAGCTGCAATCGGTAATTGCTTCACCAACGCATTATCTTTTCCAAGTTCTTCGCGAGGGGATAACGTTTTTAGCTTGTACCCAAGTTGAAATGCCGCCTTTGATGGGCATCGAGTTTCTGTGCAGGGTGGCTGATGTCCTGACAGATTATCTCGGCAGCTTGAATGAAGACTTGATTAAAGATAACTTTGTCATTGTATATGAGCTTCTGGATGAGATGATTGACAATGGCTTCCCTCTCACGACAGAACCGAATATTCTGAGGGAGATGATTGCTCCACCAAATATAGCAAACAAGATGTTGAGTGTAGTCACTGGCAACAGTTCCAACGTGAGCGACATACTTCCAGGTGCAACGTCATCTTGCATTCCATGGAGAACAACGAACCTGAAATATGCAAACAATGAAGTTTATGTTGATCTTGTTGAAGAAATGGATGCAATTATAAACAGGGATGGGGTCATGGTGAAATGTGAGATATATGGTGAAGTTCAAGTAAACTCCCATCTCTCTGGTGTTCCCGATTTGACTCTTTCATTTGCAAACCCTGCTGTTCTTGATGATGTAAGATTTCATCCGTGTGTTCGGTTTCGCCCATGGGAAGCCCATCAAATTCTGTCTTTTGTGCCCCCTGACGGACAGTTTAAGTTGATGAGTTACAGGGTTAGAAAGTTGAAGAGCTCTCCAATCTATGTAAAGCCCCAGCTAACCTCAGATGCTGGGACATGTCGTGTTAGTGTGTTGGTTGGAATACGAAATGATCCTGGAAAGACGATTGATTCAATAACTGTGCAGTTCCAACTTCCTTCCTGCGTTTTATCAGCTGATCTGAACTCGAATTATGGAACCGTGAACATTCTTGCTAACAAGACTTGTTCATGGACGATTGGGAAGATTCCTAAAGACAAAGCCCCTGCCATGTCTGGGACATTAGTGCTTGAAACAGGATTAGAGCGCCTTCATGTTTTTCCGACATTTCAAGTGGGTTTTAGGATCATGGGCGTTGCTCTCTCCGGCTTGAAAATAGATAAACTGGATTTGAAGAACCTAGCAAAACCACCGTATAAGGGTTTTCGAGCTCTCACTCGAGCAGGGGAATTTGAAGTCAGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008088 GO:0008089 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010970 GO:0016192 GO:0030705 GO:0046907 GO:0047496 GO:0048489 GO:0048490 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0097479 GO:0097480 GO:0098930 GO:0099003 GO:0099111 GO:0099514 GO:0099517 GO:0099518

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 ko04142 map04137 map04139 map04142

Pfam Domains

Protein Families

Adap_comp_sub

Protein Analysis

416

Amino Acids

46.16

Weight (kDa)

5.63

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	167 - 414	7.7e-70	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56590
fragaria_vesca	FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890
malus_domestica	MD04G1191100.v1.1
prunus_persica	Prupe.6G309600_v2.0.a1 Prupe.6G309600_v2.0.a1 Prupe.6G309600_v2.0.a1
pyrus_communis	pycom04g16860
rosa_chinensis	RchiOBHm_Chr3g0457601
rosa_laevigata	RLG00000025206
rosa_multiflora	Rmu_sc0005321.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421690
rosa_rugosa	Rorug03G0022000
rosa_samantha	Rh3AG082400 Rh3BG084700 Rh3CG084900 Rh3DG086100
rosa_wichuraiana	Rw3G007080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
AccII	CGCG	1 cut(s)	186
AciI	CCGC	1 cut(s)	227
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	2 cut(s)	887, 1133
AcsI	RAATTY	2 cut(s)	744, 1229
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	4 cut(s)	236, 767, 1056, 1199
AflIII	ACRYGT	1 cut(s)	857
AjnI	CCWGG	2 cut(s)	478, 895
AluBI	AGCT	8 cut(s)	136, 206, 291, 337, 813, 838, 956, 1211
AluI	AGCT	8 cut(s)	136, 206, 291, 337, 813, 838, 956, 1211
Alw21I	GWGCWC	2 cut(s)	815, 1213
AlwI	GGATC	2 cut(s)	887, 1133
AlwNI	CAGNNNCTG	1 cut(s)	851
Ama87I	CYCGRG	1 cut(s)	1218
ApeKI	GCWGC	3 cut(s)	67, 136, 288
ApoI	RAATTY	2 cut(s)	744, 1229
AspLEI	GCGC	1 cut(s)	1089
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	5 cut(s)	47, 134, 147, 610, 629
AvaI	CYCGRG	1 cut(s)	1218
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	762
BanII	GRGCYC	2 cut(s)	815, 1213
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	815, 1213
BbvI	GCAGC	3 cut(s)	79, 123, 300
BccI	CCATC	4 cut(s)	229, 581, 645, 747
BciT130I	CCWGG	2 cut(s)	480, 897
BfaI	CTAG	1 cut(s)	1181
BfoI	RGCGCY	1 cut(s)	1090
BisI	GCNGC	4 cut(s)	68, 137, 227, 289
BlsI	GCNGC	4 cut(s)	69, 138, 228, 290
Bme1390I	CCNGG	2 cut(s)	480, 897
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	1218
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	979
BmrFI	CCNGG	2 cut(s)	480, 897
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	3 cut(s)	249, 559, 838
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	503, 728
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 767, 1056, 1199
Bse1I	ACTGG	3 cut(s)	67, 451, 1170
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	480, 897
BseDI	CCNNGG	2 cut(s)	503, 728
BseGI	GGATG	4 cut(s)	349, 574, 592, 706
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	4 cut(s)	236, 767, 1056, 1199
BseMII	CTCAG	2 cut(s)	383, 858
BseNI	ACTGG	3 cut(s)	67, 451, 1170
BseSI	GKGCMC	1 cut(s)	762
BseXI	GCAGC	3 cut(s)	79, 123, 300
BseYI	CCCAGC	2 cut(s)	834, 851
BsgI	GTGCAG	2 cut(s)	274, 944
Bsh1236I	CGCG	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	815, 1213
BsiHKCI	CYCGRG	1 cut(s)	1218
BsiSI	CCGG	1 cut(s)	1146
BslFI	GGGAC	2 cut(s)	868, 1072
BslI	CCNNNNNNNGG	4 cut(s)	236, 767, 1056, 1199
BsmFI	GGGAC	2 cut(s)	868, 1072
BsmI	GAATGC	1 cut(s)	498
BsoBI	CYCGRG	1 cut(s)	1218
Bsp1286I	GDGCHC	3 cut(s)	762, 815, 1213
Bsp143I	GATC	4 cut(s)	550, 892, 958, 1125
Bsp19I	CCATGG	2 cut(s)	503, 728
Bsp68I	TCGCGA	1 cut(s)	186
BspACI	CCGC	1 cut(s)	227
BspCNI	CTCAG	2 cut(s)	384, 857
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	979
BspPI	GGATC	2 cut(s)	887, 1133
BspQI	GCTCTTC	1 cut(s)	803
BsrI	ACTGG	3 cut(s)	67, 451, 1170
BssECI	CCNNGG	2 cut(s)	503, 728
BssMI	GATC	4 cut(s)	550, 892, 958, 1125
BssT1I	CCWWGG	2 cut(s)	503, 728
Bst2UI	CCWGG	2 cut(s)	480, 897
Bst4CI	ACNGT	7 cut(s)	80, 112, 455, 774, 922, 982, 1194
Bst6I	CTCTTC	1 cut(s)	803
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstDEI	CTNAG	2 cut(s)	392, 844
BstDSI	CCRYGG	2 cut(s)	503, 728
BstF5I	GGATG	4 cut(s)	349, 574, 592, 706
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	1090
BstHHI	GCGC	1 cut(s)	1089
BstKTI	GATC	4 cut(s)	553, 895, 961, 1128
BstMBI	GATC	4 cut(s)	550, 892, 958, 1125
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstNI	CCWGG	2 cut(s)	480, 897
BstNSI	RCATGY	1 cut(s)	861
BstSCI	CCNGG	2 cut(s)	478, 895
BstSLI	GKGCMC	1 cut(s)	762
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	79, 123, 300
BstV2I	GAAGAC	1 cut(s)	306
BstXI	CCANNNNNNTGG	1 cut(s)	644
BtgI	CCRYGG	2 cut(s)	503, 728
BtsCI	GGATG	4 cut(s)	349, 574, 592, 706
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	14, 444
BtuMI	TCGCGA	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	851
CfoI	GCGC	1 cut(s)	1089
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	9 cut(s)	93, 504, 595, 729, 858, 1011, 1051, 1094, 1129
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	392, 844
DpnI	GATC	4 cut(s)	552, 894, 960, 1127
DpnII	GATC	4 cut(s)	550, 892, 958, 1125
Eam1104I	CTCTTC	1 cut(s)	803
EarI	CTCTTC	1 cut(s)	803
Ecl136II	GAGCTC	2 cut(s)	813, 1211
Eco130I	CCWWGG	2 cut(s)	503, 728
Eco24I	GRGCYC	2 cut(s)	815, 1213
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	2 cut(s)	813, 1211
Eco88I	CYCGRG	1 cut(s)	1218
EcoICRI	GAGCTC	2 cut(s)	813, 1211
EcoRII	CCWGG	2 cut(s)	478, 895
EcoT14I	CCWWGG	2 cut(s)	503, 728
EcoT38I	GRGCYC	2 cut(s)	815, 1213
ErhI	CCWWGG	2 cut(s)	503, 728
FaeI	CATG	9 cut(s)	96, 507, 598, 732, 861, 1014, 1054, 1097, 1132
FaqI	GGGAC	2 cut(s)	868, 1072
FatI	CATG	9 cut(s)	92, 503, 594, 728, 857, 1010, 1050, 1093, 1128
Fnu4HI	GCNGC	4 cut(s)	68, 137, 227, 289
FokI	GGATG	4 cut(s)	356, 581, 599, 693
FriOI	GRGCYC	2 cut(s)	815, 1213
Fsp4HI	GCNGC	4 cut(s)	68, 137, 227, 289
FspBI	CTAG	1 cut(s)	1181
GlaI	GCGC	1 cut(s)	1088
GluI	GCNGC	4 cut(s)	68, 137, 227, 289
GsaI	CCCAGC	2 cut(s)	838, 855
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	1090
HapII	CCGG	1 cut(s)	1146
HhaI	GCGC	1 cut(s)	1089
Hin1II	CATG	9 cut(s)	96, 507, 598, 732, 861, 1014, 1054, 1097, 1132
Hin6I	GCGC	1 cut(s)	1087
HinP1I	GCGC	1 cut(s)	1087
HinfI	GANTC	5 cut(s)	29, 125, 661, 911, 1027
HpaII	CCGG	1 cut(s)	1146
HphI	GGTGA	5 cut(s)	47, 134, 147, 610, 629
Hpy166II	GTNNAC	3 cut(s)	76, 631, 985
Hpy188I	TCNGA	5 cut(s)	28, 393, 847, 963, 1104
Hpy188III	TCNNGA	6 cut(s)	185, 271, 341, 373, 653, 689
Hpy8I	GTNNAC	3 cut(s)	76, 631, 985
HpyAV	CCTTC	2 cut(s)	948, 1100
HpyCH4III	ACNGT	7 cut(s)	80, 112, 455, 774, 922, 982, 1194
HpyCH4IV	ACGT	3 cut(s)	197, 462, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	2 cut(s)	392, 844
HpySE526I	ACGT	3 cut(s)	197, 462, 488
Hsp92II	CATG	9 cut(s)	96, 507, 598, 732, 861, 1014, 1054, 1097, 1132
HspAI	GCGC	1 cut(s)	1087
Kzo9I	GATC	4 cut(s)	550, 892, 958, 1125
LguI	GCTCTTC	1 cut(s)	803
LmnI	GCTCC	2 cut(s)	103, 412
Lsp1109I	GCAGC	3 cut(s)	79, 123, 300
LweI	GCATC	3 cut(s)	249, 559, 838
MaeI	CTAG	1 cut(s)	1181
MaeII	ACGT	3 cut(s)	197, 462, 488
MaeIII	GTNAC	2 cut(s)	442, 788
MalI	GATC	4 cut(s)	552, 894, 960, 1127
MboI	GATC	4 cut(s)	550, 892, 958, 1125
MboII	GAAGA	6 cut(s)	173, 311, 572, 820, 1036, 1186
MhlI	GDGCHC	3 cut(s)	762, 815, 1213
MluCI	AATT	5 cut(s)	147, 573, 744, 970, 1229
MlyI	GAGTC	1 cut(s)	655
MmeI	TCCRAC	4 cut(s)	483, 859, 955, 1127
MnlI	CCTC	5 cut(s)	31, 181, 378, 387, 853
MseI	TTAA	2 cut(s)	309, 777
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	1 cut(s)	1146
MspR9I	CCNGG	2 cut(s)	480, 897
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	2 cut(s)	480, 897
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	680
NcoI	CCATGG	2 cut(s)	503, 728
NdeII	GATC	4 cut(s)	550, 892, 958, 1125
NlaIII	CATG	9 cut(s)	96, 507, 598, 732, 861, 1014, 1054, 1097, 1132
NlaIV	GGNNCC	1 cut(s)	979
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	442
NruI	TCGCGA	1 cut(s)	186
NspI	RCATGY	1 cut(s)	861
PaeR7I	CTCGAG	1 cut(s)	1218
PciI	ACATGT	1 cut(s)	857
PciSI	GCTCTTC	1 cut(s)	803
PcsI	WCGNNNNNNNCGW	1 cut(s)	380
PctI	GAATGC	1 cut(s)	498
PfeI	GAWTC	4 cut(s)	29, 125, 911, 1027
PfoI	TCCNGGA	1 cut(s)	895
PkrI	GCNGC	4 cut(s)	69, 138, 228, 290
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PscI	ACATGT	1 cut(s)	857
PsiI	TTATAA	1 cut(s)	578
Psp124BI	GAGCTC	2 cut(s)	815, 1213
Psp1406I	AACGTT	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	478, 895
PspFI	CCCAGC	2 cut(s)	834, 851
PspGI	CCWGG	2 cut(s)	478, 895
PspN4I	GGNNCC	1 cut(s)	979
PspPI	GGNCC	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	1218
PstNI	CAGNNNCTG	1 cut(s)	851
PvuII	CAGCTG	1 cut(s)	956
RruI	TCGCGA	1 cut(s)	186
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	711
SacI	GAGCTC	2 cut(s)	815, 1213
SapI	GCTCTTC	1 cut(s)	803
SaqAI	TTAA	2 cut(s)	309, 777
SatI	GCNGC	4 cut(s)	68, 137, 227, 289
Sau3AI	GATC	4 cut(s)	550, 892, 958, 1125
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	2 cut(s)	480, 897
SduI	GDGCHC	3 cut(s)	762, 815, 1213
SfaNI	GCATC	3 cut(s)	249, 559, 838
Sfr274I	CTCGAG	1 cut(s)	1218
SinI	GGWCC	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	1218
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	2 cut(s)	117, 1218
SmoI	CTYRAG	2 cut(s)	117, 1218
Sse9I	AATT	5 cut(s)	147, 573, 744, 970, 1229
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	1 cut(s)	1181
SstI	GAGCTC	2 cut(s)	815, 1213
StyD4I	CCNGG	2 cut(s)	478, 895
StyI	CCWWGG	2 cut(s)	503, 728
TaaI	ACNGT	7 cut(s)	80, 112, 455, 774, 922, 982, 1194
TaiI	ACGT	3 cut(s)	200, 465, 491
TaqI	TCGA	5 cut(s)	83, 243, 968, 1207, 1219
TasI	AATT	5 cut(s)	147, 573, 744, 970, 1229
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	4 cut(s)	29, 125, 911, 1027
Tru1I	TTAA	2 cut(s)	309, 777
Tru9I	TTAA	2 cut(s)	309, 777
TscAI	CASTG	2 cut(s)	14, 451
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	3 cut(s)	67, 136, 288
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	6 cut(s)	312, 552, 657, 695, 999, 1082
TspGWI	ACGGA	2 cut(s)	699, 783
TspRI	CASTG	2 cut(s)	14, 451
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	2 cut(s)	744, 1229
XceI	RCATGY	1 cut(s)	861
XhoI	CTCGAG	1 cut(s)	1218
XspI	CTAG	1 cut(s)	1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.