Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005321.1

Orthogroup ID

OG0009630

Physical Location & Seq

Genomic Coordinates Reverse (-)

15222 .. 18653

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005321.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atgttgcagtgcatatttctgctatccgattcgggtgaggtaatgctggagaaacagctaactgggcagcgtgtagaccgttcgatatgtgtatggttctgggaacaagccatttctcaaggtgattcctccaagctgcaaccagtaattgcttcaccaacacattaccttttccaaattcttcgcgaggggataacatttttagcttgtacccaagttgaaatgccacctttgatgggcattgagttcctttgcagggtagctgatgtcctcacagattatcttggcagcttgaatgaagacttgataaaagataactttgttatcgtatatgagcttctggatgagatgattgacaatggcttccctctcactacagaacctaacattctgagagacatgattgctccaccaaatcttgttaacaagatgttgagtgttgtgacaggcaacagttctaacatgagtgatacacttccaggtgcaacatcatctctgattccatggagaacaacagatccgaaatatgctcacaatgaagtttatgttgatcttgttgaagaaatagatacaataataaacagggatggggtcctggtgaaatgcgagatatatggtgaagttcaagtgaactcccatttatcaggtgtacctgatttgactctttccttttcaaacccttctattcttgatgatgtaagattccatccatgtgttcggtttcggccttgggaatcccagcaaattctgtcgtttgtgcctcctgatggacagttcaagctaatgagttacagggttagaaagttgaaaagctctccaatctatgtaaagccacagctaacctcagatgctggaacatgtcgtcttagtgtgatggttggaatacgaaatgatcctggaaagaccattgattcaataactgtgcaatttcaactgcctccatgcattttatcagctgatctgacttcaaatcatggaacagtgaacattctttcaaataagacctgttcatggtcaattgggcgtattcctaaagataaaaccccttcaatgtctggaacattagtgcttgagaaaggattagagcgccttcatgtgttccccacatttcaagcaagttttaggatcatgggtgttgctctctctggcttgcagatagataagctcgatttgaggaatctaccaaatcgaccgtacaagggctttcgagcactcactaaagcagggcaatttgaagttaggtcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008088 GO:0008089 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010970 GO:0016192 GO:0030705 GO:0046907 GO:0047496 GO:0048489 GO:0048490 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0097479 GO:0097480 GO:0098930 GO:0099003 GO:0099111 GO:0099514 GO:0099517 GO:0099518

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 ko04142 map04137 map04139 map04142

Pfam Domains

Protein Families

Adap_comp_sub

Protein Analysis

415

Amino Acids

46.43

Weight (kDa)

5.62

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56590
fragaria_vesca	FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890
malus_domestica	MD04G1191100.v1.1
prunus_persica	Prupe.6G309600_v2.0.a1 Prupe.6G309600_v2.0.a1 Prupe.6G309600_v2.0.a1
pyrus_communis	pycom04g16860
rosa_chinensis	RchiOBHm_Chr3g0457601
rosa_laevigata	RLG00000025206
rosa_multiflora	Rmu_sc0005321.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421690
rosa_rugosa	Rorug03G0022000
rosa_samantha	Rh3AG082400 Rh3BG084700 Rh3CG084900 Rh3DG086100
rosa_wichuraiana	Rw3G007080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	186
AclWI	GGATC	3 cut(s)	512, 887, 1133
AcsI	RAATTY	2 cut(s)	177, 744
AfaI	GTAC	3 cut(s)	211, 651, 1196
AfiI	CCNNNNNNNGG	5 cut(s)	236, 256, 767, 1011, 1199
AflIII	ACRYGT	1 cut(s)	857
AjnI	CCWGG	3 cut(s)	478, 594, 895
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
Alw21I	GWGCWC	1 cut(s)	1213
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	3 cut(s)	512, 887, 1133
AlwNI	CAGNNNCTG	1 cut(s)	851
AoxI	GGCC	1 cut(s)	725
ApeKI	GCWGC	3 cut(s)	67, 136, 288
ApoI	RAATTY	2 cut(s)	177, 744
AspLEI	GCGC	1 cut(s)	1089
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	5 cut(s)	47, 134, 147, 610, 629
AvaII	GGWCC	1 cut(s)	592
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	1213
BbvI	GCAGC	3 cut(s)	79, 123, 300
BccI	CCATC	5 cut(s)	229, 581, 714, 761, 868
BciT130I	CCWGG	3 cut(s)	480, 596, 897
BcoDI	GTCTC	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	1090
BisI	GCNGC	3 cut(s)	68, 137, 289
BlsI	GCNGC	3 cut(s)	69, 138, 290
Bme1390I	CCNGG	3 cut(s)	480, 596, 897
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	1 cut(s)	593
BmrFI	CCNGG	3 cut(s)	480, 596, 897
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	838
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	102, 1091
BsaJI	CCNNGG	2 cut(s)	503, 728
Bsc4I	CCNNNNNNNGG	5 cut(s)	236, 256, 767, 1011, 1199
Bse1I	ACTGG	2 cut(s)	67, 143
BseBI	CCWGG	3 cut(s)	480, 596, 897
BseDI	CCNNGG	2 cut(s)	503, 728
BseGI	GGATG	3 cut(s)	349, 592, 706
BseLI	CCNNNNNNNGG	5 cut(s)	236, 256, 767, 1011, 1199
BseMII	CTCAG	2 cut(s)	383, 858
BseNI	ACTGG	2 cut(s)	67, 143
BseXI	GCAGC	3 cut(s)	79, 123, 300
BseYI	CCCAGC	1 cut(s)	738
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	1193
BshFI	GGCC	1 cut(s)	727
BsiEI	CGRYCG	1 cut(s)	1193
BsiHKAI	GWGCWC	1 cut(s)	1213
BslI	CCNNNNNNNGG	5 cut(s)	236, 256, 767, 1011, 1199
BsmAI	GTCTC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	727
Bsp1286I	GDGCHC	1 cut(s)	1213
Bsp143I	GATC	5 cut(s)	517, 550, 892, 958, 1125
Bsp19I	CCATGG	1 cut(s)	503
Bsp68I	TCGCGA	1 cut(s)	186
BspANI	GGCC	1 cut(s)	727
BspCNI	CTCAG	2 cut(s)	384, 857
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	593
BspPI	GGATC	3 cut(s)	512, 887, 1133
BsrI	ACTGG	2 cut(s)	67, 143
BssECI	CCNNGG	2 cut(s)	503, 728
BssMI	GATC	5 cut(s)	517, 550, 892, 958, 1125
BssT1I	CCWWGG	2 cut(s)	503, 728
Bst2UI	CCWGG	3 cut(s)	480, 596, 897
Bst4CI	ACNGT	6 cut(s)	80, 455, 774, 922, 982, 1194
BstC8I	GCNNGC	1 cut(s)	1151
BstDEI	CTNAG	3 cut(s)	392, 844, 866
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	3 cut(s)	349, 592, 706
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	1090
BstHHI	GCGC	1 cut(s)	1089
BstKTI	GATC	5 cut(s)	520, 553, 895, 961, 1128
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	5 cut(s)	517, 550, 892, 958, 1125
BstMCI	CGRYCG	1 cut(s)	1193
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	3 cut(s)	480, 596, 897
BstNSI	RCATGY	1 cut(s)	861
BstSCI	CCNGG	3 cut(s)	478, 594, 895
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	79, 123, 300
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	727
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	3 cut(s)	349, 592, 706
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	14, 987
BtuMI	TCGCGA	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	1151
CaiI	CAGNNNCTG	1 cut(s)	851
CfoI	GCGC	1 cut(s)	1089
Cfr13I	GGNCC	1 cut(s)	592
Csp6I	GTAC	3 cut(s)	210, 650, 1195
CviQI	GTAC	3 cut(s)	210, 650, 1195
DdeI	CTNAG	3 cut(s)	392, 844, 866
DpnI	GATC	5 cut(s)	519, 552, 894, 960, 1127
DpnII	GATC	5 cut(s)	517, 550, 892, 958, 1125
Eco130I	CCWWGG	2 cut(s)	503, 728
Eco47I	GGWCC	1 cut(s)	592
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRII	CCWGG	3 cut(s)	478, 594, 895
EcoT14I	CCWWGG	2 cut(s)	503, 728
EcoT22I	ATGCAT	1 cut(s)	947
ErhI	CCWWGG	2 cut(s)	503, 728
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	68, 137, 289
FokI	GGATG	3 cut(s)	356, 599, 693
Fsp4HI	GCNGC	3 cut(s)	68, 137, 289
GlaI	GCGC	1 cut(s)	1088
GluI	GCNGC	3 cut(s)	68, 137, 289
GsaI	CCCAGC	1 cut(s)	742
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	1090
HaeIII	GGCC	1 cut(s)	727
HhaI	GCGC	1 cut(s)	1089
Hin6I	GCGC	1 cut(s)	1087
HinP1I	GCGC	1 cut(s)	1087
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	8 cut(s)	29, 125, 499, 661, 702, 734, 911, 1177
HpaI	GTTAAC	1 cut(s)	424
HphI	GGTGA	5 cut(s)	47, 134, 147, 610, 629
Hpy166II	GTNNAC	5 cut(s)	76, 424, 631, 650, 985
Hpy188I	TCNGA	6 cut(s)	28, 393, 498, 522, 847, 963
Hpy188III	TCNNGA	5 cut(s)	185, 341, 689, 764, 1056
Hpy8I	GTNNAC	5 cut(s)	76, 424, 631, 650, 985
HpyAV	CCTTC	3 cut(s)	690, 1056, 1100
HpyCH4III	ACNGT	6 cut(s)	80, 455, 774, 922, 982, 1194
HpyCH4V	TGCA	8 cut(s)	7, 12, 139, 255, 485, 925, 945, 1153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	3 cut(s)	392, 844, 866
HspAI	GCGC	1 cut(s)	1087
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	5 cut(s)	517, 550, 892, 958, 1125
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	3 cut(s)	79, 123, 300
LweI	GCATC	1 cut(s)	838
MaeIII	GTNAC	2 cut(s)	442, 788
MalI	GATC	5 cut(s)	519, 552, 894, 960, 1127
MboI	GATC	5 cut(s)	517, 550, 892, 958, 1125
MboII	GAAGA	3 cut(s)	173, 311, 572
MfeI	CAATTG	1 cut(s)	1017
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	1213
MluCI	AATT	6 cut(s)	147, 177, 744, 926, 1017, 1229
MlyI	GAGTC	1 cut(s)	655
MmeI	TCCRAC	1 cut(s)	859
MnlI	CCTC	9 cut(s)	31, 139, 181, 281, 378, 771, 853, 948, 1167
Mph1103I	ATGCAT	1 cut(s)	947
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	956
MspR9I	CCNGG	3 cut(s)	480, 596, 897
MunI	CAATTG	1 cut(s)	1017
MvaI	CCWGG	3 cut(s)	480, 596, 897
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	503
NdeII	GATC	5 cut(s)	517, 550, 892, 958, 1125
NlaIV	GGNNCC	1 cut(s)	593
NmuCI	GTSAC	1 cut(s)	442
NruI	TCGCGA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	947
NspI	RCATGY	1 cut(s)	861
PciI	ACATGT	1 cut(s)	857
PfeI	GAWTC	7 cut(s)	29, 125, 499, 702, 734, 911, 1177
PfoI	TCCNGGA	1 cut(s)	895
PkrI	GCNGC	3 cut(s)	69, 138, 290
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PpuMI	RGGWCCY	1 cut(s)	592
PscI	ACATGT	1 cut(s)	857
Psp5II	RGGWCCY	1 cut(s)	592
Psp6I	CCWGG	3 cut(s)	478, 594, 895
PspFI	CCCAGC	1 cut(s)	738
PspGI	CCWGG	3 cut(s)	478, 594, 895
PspN4I	GGNNCC	1 cut(s)	593
PspPI	GGNCC	1 cut(s)	592
PspPPI	RGGWCCY	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	956
RruI	TCGCGA	1 cut(s)	186
RsaI	GTAC	3 cut(s)	211, 651, 1196
RsaNI	GTAC	3 cut(s)	210, 650, 1195
RseI	CAYNNNNRTG	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	3 cut(s)	68, 137, 289
Sau3AI	GATC	5 cut(s)	517, 550, 892, 958, 1125
Sau96I	GGNCC	1 cut(s)	592
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	3 cut(s)	480, 596, 897
SduI	GDGCHC	1 cut(s)	1213
SfaNI	GCATC	1 cut(s)	838
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	2 cut(s)	117, 1070
SmoI	CTYRAG	2 cut(s)	117, 1070
Sse9I	AATT	6 cut(s)	147, 177, 744, 926, 1017, 1229
StyD4I	CCNGG	3 cut(s)	478, 594, 895
StyI	CCWWGG	2 cut(s)	503, 728
TaaI	ACNGT	6 cut(s)	80, 455, 774, 922, 982, 1194
TaqI	TCGA	4 cut(s)	83, 1167, 1189, 1207
TasI	AATT	6 cut(s)	147, 177, 744, 926, 1017, 1229
TfiI	GAWTC	7 cut(s)	29, 125, 499, 702, 734, 911, 1177
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	14, 987
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	3 cut(s)	67, 136, 288
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	312, 552, 999, 1082
TspRI	CASTG	2 cut(s)	14, 987
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	2 cut(s)	177, 744
XceI	RCATGY	1 cut(s)	861
XmiI	GTMKAC	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.