Prupe.6G309600_v2.0.a1

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
27809196 .. 27812736
3541 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G309600.3

Sequence Viewer

Length: 1248 bp
ATGTTGCAGTGCATTTTTCTGCTATCAGATTCTGGTGAGGTAATGCTGGAGAAACAGCTTACAGGGCAGCGTGTGGACCGTTCCATATGTGCATGGTTTTGGGAACATACCATTTCTCAAGGTGATTTCCCCAAGCTGCAACCAGTGATTGCTTCACCAACCCATTATCTTTTCCAAATTCTTCGCGAGGGGATAACGTTTTTAGCATGTACGCAAGTTGAAATGCCGCCTTTGATGGCCATTGAGTTCCTTTGCAGGGTAGCTGATGTCCTTTCAGATTATCTTGGTGGCTTGAATGAAGACTTGATAAAAGATAACTTTGTCATCGTATATGAGCTTCTGGATGAGATGATTGACAATGGCTTCCCTCTCACTACAGAACCTAATATTCTGAGAGAGATGATTGCTCCACCAAATATAGTTAACAAGATGTTGAGTGTTGTGACAGGCAACAGTTCCAACATGAGTGACACACTTCCAGGTGCAACATCATCTTGCATTCCATGGAGAACAGCAGACCCGAAATATGCTAACAATGAAGTTTATGTTGATCTTGTTGAAGAAATGGATGCAATTGTAAACAGGGATGGGGTCCTGGTGAAATGTGAGATATATGGTGAAGTGCAAGTGAACTCCCATCTCTCAGGTGTTCCTGATTTGACTCTTTCATTTGCAAACCCTTCTATTCTTGATGATGTAAGATTCCATCCATGTGTTCGATTTCGCCCTTGGGAATCCCAACAAATTCTGTCATTTGTGCCTCCTGATGGACAGTTTAAACTGATGAGCTACAGGGTTAGAAAGTTGAAGAGCTCTCCAATCTACGTAAAGCCCCAGCTAACCTCAGACGCCGGGACATGTCGTGTGAGTGTGTTGGTTGGAATACGAAATGATCCTGGAAAGACAATTGATTCAATAACTGTGCAATTTCAACTGCCTCCATGCATTTTATCAGCTGACCTGACTTCAAATTATGGAACAGTGAACATTCTCGCTAATAAGACTTGCTCGTGGTCAATTGGGCGGATTCCTAAAGACAAAGCCCCTGCAATGTCTGGAACATTAGTGCTTGAGACAGGATTAGAGCGCCTTCATGTGTTTCCCACATTTCAAGTGGGTTTTAGGATCATGGGTGTTGCTCTCTCTGGCTTGCAAATAGATAAACTGGATTTGAAAAATCTACCAAAACCGCCTTACAAGGGTTTTCGAGCTCTCACTCGAGCAGGGGAATTTGAAGTCAGGTCATAA

Protein Analysis

416

Amino Acids

46.25

Weight (kDa)

5.31

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 186
AciI CCGC 3 cut(s) 227, 1024, 1190
AclI AACGTT 1 cut(s) 197
AclWI GGATC 2 cut(s) 887, 1133
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 3 cut(s) 177, 744, 1229
AcyI GRCGYC 1 cut(s) 849
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 3 cut(s) 256, 767, 1199
AflIII ACRYGT 1 cut(s) 857
AjnI CCWGG 3 cut(s) 478, 594, 895
AluBI AGCT 9 cut(s) 58, 136, 263, 337, 789, 813, 838, 956, 1211
AluI AGCT 9 cut(s) 58, 136, 263, 337, 789, 813, 838, 956, 1211
Alw21I GWGCWC 2 cut(s) 815, 1213
Alw26I GTCTC 1 cut(s) 1067
AlwI GGATC 2 cut(s) 887, 1133
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 1218
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 67, 136
ApoI RAATTY 3 cut(s) 177, 744, 1229
AspLEI GCGC 1 cut(s) 1089
AspS9I GGNCC 2 cut(s) 76, 592
AsuC2I CCSGG 1 cut(s) 853
AsuHPI GGTGA 5 cut(s) 47, 134, 147, 610, 629
AvaI CYCGRG 1 cut(s) 1218
AvaII GGWCC 2 cut(s) 76, 592
BalI TGGCCA 1 cut(s) 239
BanII GRGCYC 2 cut(s) 815, 1213
BarI GAAGNNNNNNTAC 2 cut(s) 321, 353
BauI CACGAG 1 cut(s) 1009
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 2 cut(s) 815, 1213
BbvI GCAGC 2 cut(s) 79, 123
BccI CCATC 5 cut(s) 229, 581, 645, 714, 761
BciT130I CCWGG 3 cut(s) 480, 596, 897
BcnI CCSGG 1 cut(s) 853
BcoDI GTCTC 1 cut(s) 1067
BfmI CTRYAG 2 cut(s) 375, 790
BfoI RGCGCY 1 cut(s) 1090
BisI GCNGC 3 cut(s) 68, 137, 227
BlsI GCNGC 3 cut(s) 69, 138, 228
Bme1390I CCNGG 4 cut(s) 480, 596, 853, 897
Bme18I GGWCC 2 cut(s) 76, 592
BmeT110I CYCGRG 1 cut(s) 1218
BmgT120I GGNCC 2 cut(s) 76, 592
BmiI GGNNCC 1 cut(s) 593
BmrFI CCNGG 4 cut(s) 480, 596, 853, 897
BmsI GCATC 1 cut(s) 559
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 68
BpuEI CTTGAG 2 cut(s) 102, 1091
BpuMI CCSGG 1 cut(s) 853
BsaAI YACGTR 1 cut(s) 826
BsaHI GRCGYC 1 cut(s) 849
BsaJI CCNNGG 2 cut(s) 503, 728
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 767, 1199
Bse1I ACTGG 2 cut(s) 143, 1170
Bse3DI GCAATG 1 cut(s) 1056
BseBI CCWGG 3 cut(s) 480, 596, 897
BseDI CCNNGG 2 cut(s) 503, 728
BseGI GGATG 4 cut(s) 349, 574, 592, 706
BseLI CCNNNNNNNGG 3 cut(s) 256, 767, 1199
BseMI GCAATG 1 cut(s) 1056
BseMII CTCAG 3 cut(s) 383, 657, 858
BseNI ACTGG 2 cut(s) 143, 1170
BseXI GCAGC 2 cut(s) 79, 123
BseYI CCCAGC 1 cut(s) 834
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 815, 1213
BsiHKCI CYCGRG 1 cut(s) 1218
BsiSI CCGG 1 cut(s) 852
BslFI GGGAC 1 cut(s) 868
BslI CCNNNNNNNGG 3 cut(s) 256, 767, 1199
BsmAI GTCTC 1 cut(s) 1067
BsmFI GGGAC 1 cut(s) 868
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 1218
Bsp1286I GDGCHC 2 cut(s) 815, 1213
Bsp143I GATC 3 cut(s) 550, 892, 1125
Bsp19I CCATGG 1 cut(s) 503
Bsp68I TCGCGA 1 cut(s) 186
BspACI CCGC 3 cut(s) 227, 1024, 1190
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 3 cut(s) 384, 656, 857
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 593
BspPI GGATC 2 cut(s) 887, 1133
BspQI GCTCTTC 1 cut(s) 803
BsrDI GCAATG 1 cut(s) 1056
BsrI ACTGG 2 cut(s) 143, 1170
BssECI CCNNGG 2 cut(s) 503, 728
BssMI GATC 3 cut(s) 550, 892, 1125
BssNI GRCGYC 1 cut(s) 849
BssSI CACGAG 1 cut(s) 1009
BssT1I CCWWGG 2 cut(s) 503, 728
Bst2BI CACGAG 1 cut(s) 1009
Bst2UI CCWGG 3 cut(s) 480, 596, 897
Bst4CI ACNGT 5 cut(s) 80, 455, 774, 922, 982
Bst6I CTCTTC 1 cut(s) 803
BstACI GRCGYC 1 cut(s) 849
BstBAI YACGTR 1 cut(s) 826
BstC8I GCNNGC 1 cut(s) 1151
BstDEI CTNAG 3 cut(s) 392, 643, 844
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 4 cut(s) 349, 574, 592, 706
BstFNI CGCG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 1090
BstHHI GCGC 1 cut(s) 1089
BstKTI GATC 3 cut(s) 553, 895, 1128
BstMAI GTCTC 1 cut(s) 1067
BstMBI GATC 3 cut(s) 550, 892, 1125
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 3 cut(s) 480, 596, 897
BstNSI RCATGY 2 cut(s) 210, 861
BstSCI CCNGG 4 cut(s) 478, 594, 851, 895
BstSFI CTRYAG 2 cut(s) 375, 790
BstSNI TACGTA 1 cut(s) 826
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 79, 123
BstV2I GAAGAC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 503
BtsCI GGATG 4 cut(s) 349, 574, 592, 706
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 3 cut(s) 14, 150, 987
BtuMI TCGCGA 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 1151
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 1 cut(s) 1089
Cfr13I GGNCC 2 cut(s) 76, 592
CseI GACGC 1 cut(s) 857
Csp6I GTAC 1 cut(s) 210
CviAII CATG 9 cut(s) 93, 207, 463, 504, 711, 858, 942, 1094, 1129
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 3 cut(s) 392, 643, 844
DpnI GATC 3 cut(s) 552, 894, 1127
DpnII GATC 3 cut(s) 550, 892, 1125
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
EciI GGCGGA 1 cut(s) 1039
Ecl136II GAGCTC 2 cut(s) 813, 1211
Eco105I TACGTA 1 cut(s) 826
Eco130I CCWWGG 2 cut(s) 503, 728
Eco24I GRGCYC 2 cut(s) 815, 1213
Eco47I GGWCC 2 cut(s) 76, 592
Eco53kI GAGCTC 2 cut(s) 813, 1211
Eco88I CYCGRG 1 cut(s) 1218
EcoICRI GAGCTC 2 cut(s) 813, 1211
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 3 cut(s) 478, 594, 895
EcoT14I CCWWGG 2 cut(s) 503, 728
EcoT22I ATGCAT 1 cut(s) 947
EcoT38I GRGCYC 2 cut(s) 815, 1213
ErhI CCWWGG 2 cut(s) 503, 728
FaeI CATG 9 cut(s) 96, 210, 466, 507, 714, 861, 945, 1097, 1132
FaqI GGGAC 1 cut(s) 868
FatI CATG 9 cut(s) 92, 206, 462, 503, 710, 857, 941, 1093, 1128
FauNDI CATATG 1 cut(s) 86
Fnu4HI GCNGC 3 cut(s) 68, 137, 227
FokI GGATG 4 cut(s) 356, 581, 599, 693
FriOI GRGCYC 2 cut(s) 815, 1213
Fsp4HI GCNGC 3 cut(s) 68, 137, 227
GlaI GCGC 1 cut(s) 1088
GluI GCNGC 3 cut(s) 68, 137, 227
GsaI CCCAGC 1 cut(s) 838
GsuI CTGGAG 1 cut(s) 68
HaeII RGCGCY 1 cut(s) 1090
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 852
HgaI GACGC 1 cut(s) 857
HhaI GCGC 1 cut(s) 1089
Hin1I GRCGYC 1 cut(s) 849
Hin1II CATG 9 cut(s) 96, 210, 466, 507, 714, 861, 945, 1097, 1132
Hin6I GCGC 1 cut(s) 1087
HinP1I GCGC 1 cut(s) 1087
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 6 cut(s) 29, 661, 702, 734, 911, 1027
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 1 cut(s) 852
HphI GGTGA 5 cut(s) 47, 134, 147, 610, 629
Hpy166II GTNNAC 5 cut(s) 76, 424, 580, 631, 985
Hpy188I TCNGA 4 cut(s) 28, 277, 393, 847
Hpy188III TCNNGA 6 cut(s) 185, 341, 653, 689, 764, 1056
Hpy8I GTNNAC 5 cut(s) 76, 424, 580, 631, 985
HpyAV CCTTC 2 cut(s) 690, 1100
HpyCH4III ACNGT 5 cut(s) 80, 455, 774, 922, 982
HpyCH4IV ACGT 2 cut(s) 197, 825
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 3 cut(s) 392, 643, 844
HpySE526I ACGT 2 cut(s) 197, 825
Hsp92I GRCGYC 1 cut(s) 849
Hsp92II CATG 9 cut(s) 96, 210, 466, 507, 714, 861, 945, 1097, 1132
HspAI GCGC 1 cut(s) 1087
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 3 cut(s) 550, 892, 1125
LguI GCTCTTC 1 cut(s) 803
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 2 cut(s) 79, 123
LweI GCATC 1 cut(s) 559
MaeII ACGT 2 cut(s) 197, 825
MaeIII GTNAC 2 cut(s) 442, 467
MalI GATC 3 cut(s) 552, 894, 1127
MboI GATC 3 cut(s) 550, 892, 1125
MboII GAAGA 4 cut(s) 173, 311, 572, 820
MfeI CAATTG 3 cut(s) 573, 906, 1017
MhlI GDGCHC 2 cut(s) 815, 1213
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 8 cut(s) 177, 573, 744, 906, 926, 970, 1017, 1229
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 655
MmeI TCCRAC 2 cut(s) 483, 859
MnlI CCTC 6 cut(s) 31, 181, 378, 771, 853, 948
Mox20I TGGCCA 1 cut(s) 239
Mph1103I ATGCAT 1 cut(s) 947
MscI TGGCCA 1 cut(s) 239
MseI TTAA 2 cut(s) 423, 777
MslI CAYNNNNRTG 1 cut(s) 711
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 956
MspI CCGG 1 cut(s) 852
MspR9I CCNGG 4 cut(s) 480, 596, 853, 897
MssI GTTTAAAC 1 cut(s) 778
MunI CAATTG 3 cut(s) 573, 906, 1017
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 3 cut(s) 480, 596, 897
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 64
NciI CCSGG 1 cut(s) 853
NcoI CCATGG 1 cut(s) 503
NdeI CATATG 1 cut(s) 86
NdeII GATC 3 cut(s) 550, 892, 1125
NlaIII CATG 9 cut(s) 96, 210, 466, 507, 714, 861, 945, 1097, 1132
NlaIV GGNNCC 1 cut(s) 593
NmuCI GTSAC 2 cut(s) 442, 467
NruI TCGCGA 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 947
NspI RCATGY 2 cut(s) 210, 861
PaeR7I CTCGAG 1 cut(s) 1218
PciI ACATGT 1 cut(s) 857
PciSI GCTCTTC 1 cut(s) 803
PctI GAATGC 1 cut(s) 498
PfeI GAWTC 5 cut(s) 29, 702, 734, 911, 1027
PfoI TCCNGGA 1 cut(s) 895
PkrI GCNGC 3 cut(s) 69, 138, 228
PleI GAGTC 1 cut(s) 655
PmeI GTTTAAAC 1 cut(s) 778
PpsI GAGTC 1 cut(s) 655
Ppu21I YACGTR 1 cut(s) 826
PpuMI RGGWCCY 1 cut(s) 592
PscI ACATGT 1 cut(s) 857
Psp124BI GAGCTC 2 cut(s) 815, 1213
Psp1406I AACGTT 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 3 cut(s) 478, 594, 895
PspFI CCCAGC 1 cut(s) 834
PspGI CCWGG 3 cut(s) 478, 594, 895
PspN4I GGNNCC 1 cut(s) 593
PspPI GGNCC 2 cut(s) 76, 592
PspPPI RGGWCCY 1 cut(s) 592
PspXI VCTCGAGB 1 cut(s) 1218
PstNI CAGNNNCTG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 956
RruI TCGCGA 1 cut(s) 186
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 711
SacI GAGCTC 2 cut(s) 815, 1213
SapI GCTCTTC 1 cut(s) 803
SaqAI TTAA 2 cut(s) 423, 777
SatI GCNGC 3 cut(s) 68, 137, 227
Sau3AI GATC 3 cut(s) 550, 892, 1125
Sau96I GGNCC 2 cut(s) 76, 592
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 4 cut(s) 480, 596, 853, 897
SduI GDGCHC 2 cut(s) 815, 1213
SfaNI GCATC 1 cut(s) 559
SfcI CTRYAG 2 cut(s) 375, 790
Sfr274I CTCGAG 1 cut(s) 1218
SinI GGWCC 2 cut(s) 76, 592
SlaI CTCGAG 1 cut(s) 1218
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 3 cut(s) 117, 1070, 1218
SmoI CTYRAG 3 cut(s) 117, 1070, 1218
SnaBI TACGTA 1 cut(s) 826
Sse9I AATT 8 cut(s) 177, 573, 744, 906, 926, 970, 1017, 1229
SsiI CCGC 3 cut(s) 227, 1024, 1190
SspI AATATT 1 cut(s) 388
SstI GAGCTC 2 cut(s) 815, 1213
StyD4I CCNGG 4 cut(s) 478, 594, 851, 895
StyI CCWWGG 2 cut(s) 503, 728
TaaI ACNGT 5 cut(s) 80, 455, 774, 922, 982
TaiI ACGT 2 cut(s) 200, 828
TaqI TCGA 3 cut(s) 718, 1207, 1219
TasI AATT 8 cut(s) 177, 573, 744, 906, 926, 970, 1017, 1229
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 5 cut(s) 29, 702, 734, 911, 1027
Tru1I TTAA 2 cut(s) 423, 777
Tru9I TTAA 2 cut(s) 423, 777
TscAI CASTG 3 cut(s) 14, 150, 987
TseFI GTSAC 2 cut(s) 442, 467
TseI GCWGC 2 cut(s) 67, 136
Tsp45I GTSAC 2 cut(s) 442, 467
TspDTI ATGAA 4 cut(s) 312, 552, 657, 1082
TspRI CASTG 3 cut(s) 14, 150, 987
VpaK11BI GGWCC 2 cut(s) 76, 592
XapI RAATTY 3 cut(s) 177, 744, 1229
XceI RCATGY 2 cut(s) 210, 861
XcmI CCANNNNNNNNNTGG 1 cut(s) 1111
XhoI CTCGAG 1 cut(s) 1218
Zsp2I ATGCAT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.