Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009630

Physical Location & Seq

Genomic Coordinates Forward (+)

19448623 .. 19451321

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGTTGCAGTGCATATTTCTGCTATCGGATTCTGGTGAGGTAATGCTGGAGAAACAACTTACTGGGCAGCGTGTGGACCGTTCGATATGCACATGGTTCTGGGAGCATACGGTTTCTCAAGGTGATTCCCCCAAGCTGCAATCGGTAATTGCTTCGCCAACGCATTATCTTTTCCAAGTTCTTCGCGAGGGGATAACGTTTTTAGCTTGTACCCAAGTTGAAATGCCGCCTTTGATGGGCATCGAGGTGAATATCATGGCGGAATGTGCGGTGGCTGATGTCCTGACAGATTATCTCGGCAGCTTGAATGAAGACTTGATTAAAGATAACTTTGTCATTGTATATGAGCTTCTGGATGAGATGATTGACAATGGCTTCCCTCTCACGACAGAACCGAATATTCTGAGAGAGATGATTGCTCCACCAAATATAGCAAACAAGATGTTGAGTGTAGTCACTGGCAACAGTTCCAACGTGAGCGACATACTTCCAGGTGCAACATCATCTTGCATTCCATGGAGAACAACAAACCTGAAATATGCAAACAATGAAGTTTATGTTGATCTGGTTGAAGAAATGGATGCAATTATAAACAGGGATGGGGTCCTGGTGAAATGTGAGATATATGGTGAAGTTCAAGTAAACTCCCATCTCTCTGGTGTTCCCGATTTGACTCTTTCATTTGCAAACCCTGCTGTTCTTGATGATGTAAGATTTCATCCGTGTGTTCGGTTTCGTCCATGGGAAGCCCATCAAATTCTGTCTTTTGTGCCCCCTGACGGACAGTTTAAGTTAATGAGTTACAGGGTTAGAAAGTTGAAGAGCTCTCCAATCTATGTAAAGCCCCAGCTAACTTCAGATGCTGGGACATGTCGTGTTAGTGTGTTGGTTGGAATACGAAATGATCCTGGAAAGACGATTGATTCAATAACTGTGCAGTTCCAACTTCCTTCCTGTGTTTTATCAGCTGATCTGAACTCGAATTATGGAACTGTGAACATTCTTGCTAACAAGACTTGTTCATGGACGATTGGGAAGATTCCTAAAGACAAAGCCCCTGCATTGTCTGGGACATTATTGCTTGAAACAGGATTAGAGCGCCTTCACGTTTTTCCGACATTTCAAGTGGGTTTTAGGATCATGGGCGTTGCTCTCTCTGGCTTGAAAATAGATAAACTGGATTTGAAGAATCTGCCAAAACCACCTTATAAGGGTTTTCGAGCTCTCACTCGAGCAGGGGAATTTGAAGTCAGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008088 GO:0008089 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010970 GO:0016192 GO:0030705 GO:0046907 GO:0047496 GO:0048489 GO:0048490 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0097479 GO:0097480 GO:0098930 GO:0099003 GO:0099111 GO:0099514 GO:0099517 GO:0099518

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 ko04142 map04137 map04139 map04142

Pfam Domains

Protein Families

Adap_comp_sub

Protein Analysis

420

Amino Acids

46.47

Weight (kDa)

5.4

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56590
fragaria_vesca	FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890 FvH4_6g07890
malus_domestica	MD04G1191100.v1.1
prunus_persica	Prupe.6G309600_v2.0.a1 Prupe.6G309600_v2.0.a1 Prupe.6G309600_v2.0.a1
pyrus_communis	pycom04g16860
rosa_chinensis	RchiOBHm_Chr3g0457601
rosa_laevigata	RLG00000025206
rosa_multiflora	Rmu_sc0005321.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421690
rosa_rugosa	Rorug03G0022000
rosa_samantha	Rh3AG082400 Rh3BG084700 Rh3CG084900 Rh3DG086100
rosa_wichuraiana	Rw3G007080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	590, 1209
AccII	CGCG	1 cut(s)	186
AciI	CCGC	3 cut(s)	227, 260, 269
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	2 cut(s)	899, 1145
AcsI	RAATTY	2 cut(s)	756, 1241
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	3 cut(s)	236, 779, 1211
AflIII	ACRYGT	1 cut(s)	869
AjnI	CCWGG	3 cut(s)	490, 606, 907
AluBI	AGCT	8 cut(s)	136, 206, 303, 349, 825, 850, 968, 1223
AluI	AGCT	8 cut(s)	136, 206, 303, 349, 825, 850, 968, 1223
Alw21I	GWGCWC	2 cut(s)	827, 1225
AlwI	GGATC	2 cut(s)	899, 1145
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	1230
ApeKI	GCWGC	3 cut(s)	67, 136, 300
ApoI	RAATTY	2 cut(s)	756, 1241
AspLEI	GCGC	1 cut(s)	1101
AspS9I	GGNCC	2 cut(s)	76, 604
AsuHPI	GGTGA	5 cut(s)	47, 134, 259, 622, 641
AvaI	CYCGRG	1 cut(s)	1230
AvaII	GGWCC	2 cut(s)	76, 604
BaeGI	GKGCMC	1 cut(s)	774
BanII	GRGCYC	2 cut(s)	827, 1225
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	2 cut(s)	827, 1225
BbvI	GCAGC	3 cut(s)	79, 123, 312
BccI	CCATC	4 cut(s)	229, 593, 657, 759
BciT130I	CCWGG	3 cut(s)	492, 608, 909
BfoI	RGCGCY	1 cut(s)	1102
BisI	GCNGC	4 cut(s)	68, 137, 227, 301
BlsI	GCNGC	4 cut(s)	69, 138, 228, 302
Bme1390I	CCNGG	3 cut(s)	492, 608, 909
Bme18I	GGWCC	2 cut(s)	76, 604
BmeT110I	CYCGRG	1 cut(s)	1230
BmgT120I	GGNCC	2 cut(s)	76, 604
BmiI	GGNNCC	1 cut(s)	605
BmrFI	CCNGG	3 cut(s)	492, 608, 909
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	3 cut(s)	249, 571, 850
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	515, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 779, 1211
Bse1I	ACTGG	3 cut(s)	67, 463, 1182
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	3 cut(s)	492, 608, 909
BseDI	CCNNGG	2 cut(s)	515, 740
BseGI	GGATG	4 cut(s)	361, 586, 604, 718
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	3 cut(s)	236, 779, 1211
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	3 cut(s)	67, 463, 1182
BseSI	GKGCMC	1 cut(s)	774
BseXI	GCAGC	3 cut(s)	79, 123, 312
BseYI	CCCAGC	2 cut(s)	846, 863
BsgI	GTGCAG	1 cut(s)	956
Bsh1236I	CGCG	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	827, 1225
BsiHKCI	CYCGRG	1 cut(s)	1230
BslFI	GGGAC	2 cut(s)	880, 1084
BslI	CCNNNNNNNGG	3 cut(s)	236, 779, 1211
BsmFI	GGGAC	2 cut(s)	880, 1084
BsmI	GAATGC	1 cut(s)	510
BsoBI	CYCGRG	1 cut(s)	1230
Bsp1286I	GDGCHC	3 cut(s)	774, 827, 1225
Bsp143I	GATC	4 cut(s)	562, 904, 970, 1137
Bsp19I	CCATGG	2 cut(s)	515, 740
Bsp68I	TCGCGA	1 cut(s)	186
BspACI	CCGC	3 cut(s)	227, 260, 269
BspCNI	CTCAG	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	899, 1145
BspQI	GCTCTTC	1 cut(s)	815
BsrI	ACTGG	3 cut(s)	67, 463, 1182
BssECI	CCNNGG	2 cut(s)	515, 740
BssMI	GATC	4 cut(s)	562, 904, 970, 1137
BssT1I	CCWWGG	2 cut(s)	515, 740
Bst2UI	CCWGG	3 cut(s)	492, 608, 909
Bst4CI	ACNGT	6 cut(s)	80, 112, 467, 786, 934, 994
Bst6I	CTCTTC	1 cut(s)	815
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstDEI	CTNAG	1 cut(s)	404
BstDSI	CCRYGG	2 cut(s)	515, 740
BstF5I	GGATG	4 cut(s)	361, 586, 604, 718
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	1102
BstHHI	GCGC	1 cut(s)	1101
BstKTI	GATC	4 cut(s)	565, 907, 973, 1140
BstMBI	GATC	4 cut(s)	562, 904, 970, 1137
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 692
BstNI	CCWGG	3 cut(s)	492, 608, 909
BstNSI	RCATGY	1 cut(s)	873
BstSCI	CCNGG	3 cut(s)	490, 606, 907
BstSLI	GKGCMC	1 cut(s)	774
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	79, 123, 312
BstV2I	GAAGAC	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	656
BtgI	CCRYGG	2 cut(s)	515, 740
BtsCI	GGATG	4 cut(s)	361, 586, 604, 718
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	14, 456
BtuMI	TCGCGA	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	863
CfoI	GCGC	1 cut(s)	1101
Cfr13I	GGNCC	2 cut(s)	76, 604
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	7 cut(s)	93, 256, 516, 741, 870, 1023, 1141
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	4 cut(s)	564, 906, 972, 1139
DpnII	GATC	4 cut(s)	562, 904, 970, 1137
Eam1104I	CTCTTC	1 cut(s)	815
EarI	CTCTTC	1 cut(s)	815
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	2 cut(s)	825, 1223
Eco130I	CCWWGG	2 cut(s)	515, 740
Eco24I	GRGCYC	2 cut(s)	827, 1225
Eco47I	GGWCC	2 cut(s)	76, 604
Eco53kI	GAGCTC	2 cut(s)	825, 1223
Eco57I	CTGAAG	1 cut(s)	840
Eco88I	CYCGRG	1 cut(s)	1230
EcoICRI	GAGCTC	2 cut(s)	825, 1223
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	3 cut(s)	490, 606, 907
EcoT14I	CCWWGG	2 cut(s)	515, 740
EcoT38I	GRGCYC	2 cut(s)	827, 1225
ErhI	CCWWGG	2 cut(s)	515, 740
FaeI	CATG	7 cut(s)	96, 259, 519, 744, 873, 1026, 1144
FaqI	GGGAC	2 cut(s)	880, 1084
FatI	CATG	7 cut(s)	92, 255, 515, 740, 869, 1022, 1140
Fnu4HI	GCNGC	4 cut(s)	68, 137, 227, 301
FokI	GGATG	4 cut(s)	368, 593, 611, 705
FriOI	GRGCYC	2 cut(s)	827, 1225
Fsp4HI	GCNGC	4 cut(s)	68, 137, 227, 301
GlaI	GCGC	1 cut(s)	1100
GluI	GCNGC	4 cut(s)	68, 137, 227, 301
GsaI	CCCAGC	2 cut(s)	850, 867
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	1102
HhaI	GCGC	1 cut(s)	1101
Hin1II	CATG	7 cut(s)	96, 259, 519, 744, 873, 1026, 1144
Hin6I	GCGC	1 cut(s)	1099
HinP1I	GCGC	1 cut(s)	1099
HinfI	GANTC	6 cut(s)	29, 125, 673, 923, 1039, 1189
HphI	GGTGA	5 cut(s)	47, 134, 259, 622, 641
Hpy166II	GTNNAC	3 cut(s)	76, 643, 997
Hpy188I	TCNGA	5 cut(s)	28, 405, 859, 975, 1116
Hpy188III	TCNNGA	6 cut(s)	185, 283, 353, 385, 665, 701
Hpy8I	GTNNAC	3 cut(s)	76, 643, 997
HpyAV	CCTTC	2 cut(s)	960, 1112
HpyCH4III	ACNGT	6 cut(s)	80, 112, 467, 786, 934, 994
HpyCH4IV	ACGT	3 cut(s)	197, 474, 1107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 692
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	3 cut(s)	197, 474, 1107
Hsp92II	CATG	7 cut(s)	96, 259, 519, 744, 873, 1026, 1144
HspAI	GCGC	1 cut(s)	1099
Kzo9I	GATC	4 cut(s)	562, 904, 970, 1137
LguI	GCTCTTC	1 cut(s)	815
LmnI	GCTCC	2 cut(s)	103, 424
Lsp1109I	GCAGC	3 cut(s)	79, 123, 312
LweI	GCATC	3 cut(s)	249, 571, 850
MaeII	ACGT	3 cut(s)	197, 474, 1107
MaeIII	GTNAC	2 cut(s)	454, 800
MalI	GATC	4 cut(s)	564, 906, 972, 1139
MboI	GATC	4 cut(s)	562, 904, 970, 1137
MboII	GAAGA	6 cut(s)	173, 323, 584, 832, 1048, 1198
MhlI	GDGCHC	3 cut(s)	774, 827, 1225
MluCI	AATT	5 cut(s)	147, 585, 756, 982, 1241
MlyI	GAGTC	1 cut(s)	667
MmeI	TCCRAC	4 cut(s)	495, 871, 967, 1139
MnlI	CCTC	4 cut(s)	31, 181, 238, 390
MseI	TTAA	3 cut(s)	321, 789, 794
MslI	CAYNNNNRTG	2 cut(s)	245, 723
MspA1I	CMGCKG	1 cut(s)	968
MspR9I	CCNGG	3 cut(s)	492, 608, 909
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	3 cut(s)	492, 608, 909
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	266, 692
NcoI	CCATGG	2 cut(s)	515, 740
NdeII	GATC	4 cut(s)	562, 904, 970, 1137
NlaIII	CATG	7 cut(s)	96, 259, 519, 744, 873, 1026, 1144
NlaIV	GGNNCC	1 cut(s)	605
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	454
NruI	TCGCGA	1 cut(s)	186
NspI	RCATGY	1 cut(s)	873
PaeR7I	CTCGAG	1 cut(s)	1230
PciI	ACATGT	1 cut(s)	869
PciSI	GCTCTTC	1 cut(s)	815
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	5 cut(s)	29, 125, 923, 1039, 1189
PfoI	TCCNGGA	1 cut(s)	907
PkrI	GCNGC	4 cut(s)	69, 138, 228, 302
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
PpuMI	RGGWCCY	1 cut(s)	604
PscI	ACATGT	1 cut(s)	869
PsiI	TTATAA	2 cut(s)	590, 1209
Psp124BI	GAGCTC	2 cut(s)	827, 1225
Psp1406I	AACGTT	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	3 cut(s)	490, 606, 907
PspFI	CCCAGC	2 cut(s)	846, 863
PspGI	CCWGG	3 cut(s)	490, 606, 907
PspN4I	GGNNCC	1 cut(s)	605
PspPI	GGNCC	2 cut(s)	76, 604
PspPPI	RGGWCCY	1 cut(s)	604
PspXI	VCTCGAGB	1 cut(s)	1230
PstNI	CAGNNNCTG	1 cut(s)	863
PvuII	CAGCTG	1 cut(s)	968
RruI	TCGCGA	1 cut(s)	186
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	2 cut(s)	245, 723
SacI	GAGCTC	2 cut(s)	827, 1225
SapI	GCTCTTC	1 cut(s)	815
SaqAI	TTAA	3 cut(s)	321, 789, 794
SatI	GCNGC	4 cut(s)	68, 137, 227, 301
Sau3AI	GATC	4 cut(s)	562, 904, 970, 1137
Sau96I	GGNCC	2 cut(s)	76, 604
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	3 cut(s)	492, 608, 909
SduI	GDGCHC	3 cut(s)	774, 827, 1225
SfaNI	GCATC	3 cut(s)	249, 571, 850
Sfr274I	CTCGAG	1 cut(s)	1230
SinI	GGWCC	2 cut(s)	76, 604
SlaI	CTCGAG	1 cut(s)	1230
SmiMI	CAYNNNNRTG	2 cut(s)	245, 723
SmlI	CTYRAG	2 cut(s)	117, 1230
SmoI	CTYRAG	2 cut(s)	117, 1230
Sse9I	AATT	5 cut(s)	147, 585, 756, 982, 1241
SsiI	CCGC	3 cut(s)	227, 260, 269
SspI	AATATT	1 cut(s)	400
SstI	GAGCTC	2 cut(s)	827, 1225
StyD4I	CCNGG	3 cut(s)	490, 606, 907
StyI	CCWWGG	2 cut(s)	515, 740
TaaI	ACNGT	6 cut(s)	80, 112, 467, 786, 934, 994
TaiI	ACGT	3 cut(s)	200, 477, 1110
TaqI	TCGA	5 cut(s)	83, 243, 980, 1219, 1231
TasI	AATT	5 cut(s)	147, 585, 756, 982, 1241
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	5 cut(s)	29, 125, 923, 1039, 1189
Tru1I	TTAA	3 cut(s)	321, 789, 794
Tru9I	TTAA	3 cut(s)	321, 789, 794
TscAI	CASTG	2 cut(s)	14, 463
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	3 cut(s)	67, 136, 300
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	5 cut(s)	324, 564, 669, 707, 1011
TspGWI	ACGGA	2 cut(s)	711, 795
TspRI	CASTG	2 cut(s)	14, 463
VpaK11BI	GGWCC	2 cut(s)	76, 604
XapI	RAATTY	2 cut(s)	756, 1241
XceI	RCATGY	1 cut(s)	873
XhoI	CTCGAG	1 cut(s)	1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.