FvH4_6g08170
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
4842088 .. 4846677
4590 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08170.t2

Sequence Viewer

Length: 1239 bp
ATGGCTTCTGTGGGTGTTGTACCTACAGCGGGTTTGAGAGAACCGAGTGGTCATGCTGTTGGCGTGGATAAATTGCCCGAAGAGATGAATGACATGAAAATTAGGGACGACAAGGAAATGGAAGCTACTGTTACTGTTGTTGATGGTAATGGAACAGAGACGGGCCATATAATTGTGACAACCATTGGTGGTAGAAATGGTCAGCCAAAGCAGACAATTAGTTACATGGCTGAGCGTGTTGTTGGGCATGGATCATTTGGAGTTGTGTTCCAAGCAAAGTGCTTAGAGACTGGTGAAACTGTTGCCATAAAGAAGGTTCTACAAGACAAGAGGTACAAGAACCGTGAGCTGCAAACCATGCGTCTTCTTGACCACCCAAATGTTGTATCTTTGAAGCATTGCTTCTTTTCAACAACTGAAAAGGATGAACTTTATCTCAACCTGGTACTTGAGTATGTCCCTGAAACAGTTCATCGTGTGATAAAACACTACAACAAGTTGAACCAACGGATGCCTCTGATATATGTTAAACTCTACACATACCAGATCTTTAGGGCATTATCCTACATTCACCGCTGCATTGGAGTCTGTCATCGGGACATTAAGCCTCAGAACCTTTTGGTGAATCCACATACCCACCAAGTAAAGTTGTGTGACTTTGGAAGTGCAAAAGTTTTGGTAAAAGGAGAGCCAAATATATCTTACATCTGCTCTAGATACTATAGAGCACCAGAACTCATATTTGGAGCAACCGAGTATACTACAGCTATTGATGTCTGGTCTGTTGGATGTGTTCTTGCTGAGCTATTGCTCGGACAGCCTCTGTTTCCTGGAGAGAGTGGAGTTGACCAGCTTGTTGAGATTATCAAGGTATTGGGCACTCCAACAAGGGAGGAAATCAAATGCATGAACCCTAACTATACAGAGTTCAAATTCCCTCAAATTAAAGCTCACCCATGGCACAAGATTTTCCACAAGCGTATGCCTCCAGAGGCTGTTGACCTGGTTTCAAGACTATTGCAATACTCTCCTAACTTGCGGTGCACAGCTCTGGATGCCTTGACCCATCCCTTCTTTGATGAACTTCGTGACCTGAACACCCGCCTGCCAAATGGACGTTTCCTTCCACCTTTGTTCAACTTTAAATCTCATGAATTGAAGGGGGTCCCTGCTGAGATCTTGATGAAATTGGTCCCAGAGCATGCAAGAAAGCAAGTCCCATTTATGACCTCTGATTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

413

Amino Acids

46.8

Weight (kDa)

8.58

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 76 - 359 2.7e-62 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 78 - 277 1e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 758
AciI CCGC 4 cut(s) 29, 574, 1039, 1102
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 932
AfaI GTAC 3 cut(s) 21, 335, 447
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 7 cut(s) 394, 411, 502, 931, 1011, 1138, 1159
AjnI CCWGG 3 cut(s) 441, 829, 1002
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
AluBI AGCT 7 cut(s) 125, 349, 767, 805, 853, 950, 1049
AluI AGCT 7 cut(s) 125, 349, 767, 805, 853, 950, 1049
Alw21I GWGCWC 2 cut(s) 730, 1046
Alw26I GTCTC 2 cut(s) 152, 281
Alw44I GTGCAC 1 cut(s) 1042
AlwI GGATC 1 cut(s) 259
AlwNI CAGNNNCTG 2 cut(s) 823, 995
AoxI GGCC 1 cut(s) 163
ApaLI GTGCAC 1 cut(s) 1042
ApeKI GCWGC 2 cut(s) 349, 576
ApoI RAATTY 1 cut(s) 932
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
Asp700I GAANNNNTTC 1 cut(s) 468
AspS9I GGNCC 3 cut(s) 163, 1165, 1192
AsuHPI GGTGA 4 cut(s) 305, 563, 634, 944
AvaII GGWCC 2 cut(s) 1165, 1192
BaeGI GKGCMC 2 cut(s) 881, 1046
BaeI ACNNNNGTAYC 2 cut(s) 437, 470
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 2 cut(s) 730, 1046
BbvI GCAGC 2 cut(s) 336, 563
BccI CCATC 2 cut(s) 137, 1074
BciT130I CCWGG 3 cut(s) 443, 831, 1004
BcoDI GTCTC 2 cut(s) 152, 281
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 3 cut(s) 24, 721, 762
BglII AGATCT 2 cut(s) 546, 1176
BisI GCNGC 2 cut(s) 350, 577
BlpI GCTNAGC 2 cut(s) 231, 801
BlsI GCNGC 2 cut(s) 351, 578
Bme1390I CCNGG 3 cut(s) 443, 831, 1004
Bme18I GGWCC 2 cut(s) 1165, 1192
BmgT120I GGNCC 3 cut(s) 163, 1165, 1192
BmiI GGNNCC 3 cut(s) 1166, 1167, 1194
BmrFI CCNGG 3 cut(s) 443, 831, 1004
BmsI GCATC 2 cut(s) 501, 1045
BpiI GAAGAC 1 cut(s) 356
BpmI CTGGAG 2 cut(s) 852, 972
Bpu1102I GCTNAGC 2 cut(s) 231, 801
BpuEI CTTGAG 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 956
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 397
BseBI CCWGG 3 cut(s) 443, 831, 1004
BseDI CCNNGG 1 cut(s) 956
BseGI GGATG 5 cut(s) 430, 516, 794, 1060, 1066
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 4 cut(s) 222, 623, 792, 1164
BseNI ACTGG 1 cut(s) 295
BseSI GKGCMC 2 cut(s) 881, 1046
BseXI GCAGC 2 cut(s) 336, 563
BshFI GGCC 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 730, 1046
BslFI GGGAC 6 cut(s) 119, 443, 611, 1151, 1178, 1202
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 152, 281
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 6 cut(s) 119, 443, 611, 1151, 1178, 1202
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 3 cut(s) 730, 881, 1046
Bsp143I GATC 3 cut(s) 251, 546, 1176
Bsp1720I GCTNAGC 2 cut(s) 231, 801
Bsp19I CCATGG 1 cut(s) 956
BspACI CCGC 4 cut(s) 29, 574, 1039, 1102
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 4 cut(s) 223, 622, 793, 1165
BspHI TCATGA 1 cut(s) 1150
BspLI GGNNCC 3 cut(s) 1166, 1167, 1194
BspPI GGATC 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 397
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 956
BssMI GATC 3 cut(s) 251, 546, 1176
BssNAI GTATAC 1 cut(s) 759
BssT1I CCWWGG 1 cut(s) 956
Bst1107I GTATAC 1 cut(s) 759
Bst2UI CCWGG 3 cut(s) 443, 831, 1004
Bst4CI ACNGT 5 cut(s) 130, 136, 301, 344, 469
Bst6I CTCTTC 1 cut(s) 75
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 2 cut(s) 1106, 1203
BstDEI CTNAG 5 cut(s) 231, 283, 609, 801, 1173
BstDSI CCRYGG 1 cut(s) 956
BstF5I GGATG 5 cut(s) 430, 516, 794, 1060, 1066
BstKTI GATC 3 cut(s) 254, 549, 1179
BstMAI GTCTC 2 cut(s) 152, 281
BstMBI GATC 3 cut(s) 251, 546, 1176
BstMWI GCNNNNNNNGC 3 cut(s) 358, 817, 1055
BstNI CCWGG 3 cut(s) 443, 831, 1004
BstNSI RCATGY 1 cut(s) 1205
BstSCI CCNGG 3 cut(s) 441, 829, 1002
BstSFI CTRYAG 3 cut(s) 24, 721, 762
BstSLI GKGCMC 2 cut(s) 881, 1046
BstV1I GCAGC 2 cut(s) 336, 563
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 2 cut(s) 546, 1176
BstYI RGATCY 2 cut(s) 546, 1176
BstZ17I GTATAC 1 cut(s) 759
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 956
BtsCI GGATG 5 cut(s) 430, 516, 794, 1060, 1066
Cac8I GCNNGC 2 cut(s) 1106, 1203
CaiI CAGNNNCTG 2 cut(s) 823, 995
CciI TCATGA 1 cut(s) 1150
Cfr13I GGNCC 3 cut(s) 163, 1165, 1192
CseI GACGC 1 cut(s) 350
CsiI ACCWGGT 2 cut(s) 441, 1002
Csp6I GTAC 3 cut(s) 20, 334, 446
CviAII CATG 9 cut(s) 53, 94, 226, 248, 358, 907, 957, 1151, 1202
CviQI GTAC 3 cut(s) 20, 334, 446
DdeI CTNAG 5 cut(s) 231, 283, 609, 801, 1173
DpnI GATC 3 cut(s) 253, 548, 1178
DpnII GATC 3 cut(s) 251, 546, 1176
DraI TTTAAA 1 cut(s) 1144
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 956
Eco47I GGWCC 2 cut(s) 1165, 1192
EcoO109I RGGNCCY 1 cut(s) 1165
EcoRII CCWGG 3 cut(s) 441, 829, 1002
EcoT14I CCWWGG 1 cut(s) 956
EcoT22I ATGCAT 1 cut(s) 908
ErhI CCWWGG 1 cut(s) 956
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 9 cut(s) 56, 97, 229, 251, 361, 910, 960, 1154, 1205
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 6 cut(s) 119, 443, 611, 1151, 1178, 1202
FatI CATG 9 cut(s) 52, 93, 225, 247, 357, 906, 956, 1150, 1201
FauI CCCGC 2 cut(s) 22, 1109
FblI GTMKAC 1 cut(s) 758
Fnu4HI GCNGC 2 cut(s) 350, 577
FokI GGATG 5 cut(s) 437, 523, 801, 1053, 1067
Fsp4HI GCNGC 2 cut(s) 350, 577
FspBI CTAG 1 cut(s) 714
GluI GCNGC 2 cut(s) 350, 577
GsuI CTGGAG 2 cut(s) 852, 972
HaeIII GGCC 1 cut(s) 165
HgaI GACGC 1 cut(s) 350
Hin1II CATG 9 cut(s) 56, 97, 229, 251, 361, 910, 960, 1154, 1205
HincII GTYRAC 2 cut(s) 847, 1000
HindII GTYRAC 2 cut(s) 847, 1000
HinfI GANTC 2 cut(s) 585, 625
HphI GGTGA 4 cut(s) 305, 563, 634, 944
Hpy166II GTNNAC 4 cut(s) 759, 847, 1000, 1044
Hpy188I TCNGA 4 cut(s) 519, 612, 815, 1234
Hpy188III TCNNGA 9 cut(s) 368, 596, 714, 989, 1011, 1052, 1088, 1151, 1180
Hpy8I GTNNAC 4 cut(s) 759, 847, 1000, 1044
HpyAV CCTTC 4 cut(s) 307, 1081, 1133, 1153
HpyCH4III ACNGT 5 cut(s) 130, 136, 301, 344, 469
HpyCH4IV ACGT 1 cut(s) 1117
HpyCH4V TGCA 7 cut(s) 352, 579, 668, 906, 1021, 1044, 1205
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 817, 1055
HpyF3I CTNAG 5 cut(s) 231, 283, 609, 801, 1173
HpySE526I ACGT 1 cut(s) 1117
Hsp92II CATG 9 cut(s) 56, 97, 229, 251, 361, 910, 960, 1154, 1205
KflI GGGWCCC 1 cut(s) 1165
Kzo9I GATC 3 cut(s) 251, 546, 1176
LmnI GCTCC 1 cut(s) 746
Lsp1109I GCAGC 2 cut(s) 336, 563
LweI GCATC 2 cut(s) 501, 1045
MabI ACCWGGT 2 cut(s) 441, 1002
MaeI CTAG 1 cut(s) 714
MaeII ACGT 1 cut(s) 1117
MaeIII GTNAC 5 cut(s) 130, 175, 221, 653, 1088
MalI GATC 3 cut(s) 253, 548, 1178
MboI GATC 3 cut(s) 251, 546, 1176
MboII GAAGA 2 cut(s) 92, 356
MflI RGATCY 2 cut(s) 546, 1176
MhlI GDGCHC 3 cut(s) 730, 881, 1046
MluCI AATT 8 cut(s) 71, 99, 171, 216, 932, 942, 1154, 1187
MlyI GAGTC 1 cut(s) 594
MmeI TCCRAC 2 cut(s) 766, 908
MnlI CCTC 8 cut(s) 324, 525, 618, 831, 886, 948, 985, 996
Mph1103I ATGCAT 1 cut(s) 908
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 4 cut(s) 528, 603, 945, 1143
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 2 cut(s) 29, 576
MspR9I CCNGG 3 cut(s) 443, 831, 1004
MvaI CCWGG 3 cut(s) 443, 831, 1004
MwoI GCNNNNNNNGC 3 cut(s) 358, 817, 1055
NcoI CCATGG 1 cut(s) 956
NdeII GATC 3 cut(s) 251, 546, 1176
NlaIII CATG 9 cut(s) 56, 97, 229, 251, 361, 910, 960, 1154, 1205
NlaIV GGNNCC 3 cut(s) 1166, 1167, 1194
NmuCI GTSAC 3 cut(s) 175, 653, 1088
NsiI ATGCAT 1 cut(s) 908
NspI RCATGY 1 cut(s) 1205
PaeI GCATGC 1 cut(s) 1205
PagI TCATGA 1 cut(s) 1150
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 1 cut(s) 625
PfoI TCCNGGA 1 cut(s) 829
PkrI GCNGC 2 cut(s) 351, 578
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
PpuMI RGGWCCY 1 cut(s) 1165
Psp5II RGGWCCY 1 cut(s) 1165
Psp6I CCWGG 3 cut(s) 441, 829, 1002
PspGI CCWGG 3 cut(s) 441, 829, 1002
PspN4I GGNNCC 3 cut(s) 1166, 1167, 1194
PspPI GGNCC 3 cut(s) 163, 1165, 1192
PspPPI RGGWCCY 1 cut(s) 1165
PstNI CAGNNNCTG 2 cut(s) 823, 995
PsuI RGATCY 2 cut(s) 546, 1176
RsaI GTAC 3 cut(s) 21, 335, 447
RsaNI GTAC 3 cut(s) 20, 334, 446
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 4 cut(s) 528, 603, 945, 1143
SatI GCNGC 2 cut(s) 350, 577
Sau3AI GATC 3 cut(s) 251, 546, 1176
Sau96I GGNCC 3 cut(s) 163, 1165, 1192
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 3 cut(s) 443, 831, 1004
SduI GDGCHC 3 cut(s) 730, 881, 1046
SexAI ACCWGGT 2 cut(s) 441, 1002
SfaNI GCATC 2 cut(s) 501, 1045
SfcI CTRYAG 3 cut(s) 24, 721, 762
SinI GGWCC 2 cut(s) 1165, 1192
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SphI GCATGC 1 cut(s) 1205
Sse9I AATT 8 cut(s) 71, 99, 171, 216, 932, 942, 1154, 1187
SsiI CCGC 4 cut(s) 29, 574, 1039, 1102
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 3 cut(s) 441, 829, 1002
StyI CCWWGG 1 cut(s) 956
TaaI ACNGT 5 cut(s) 130, 136, 301, 344, 469
TaiI ACGT 1 cut(s) 1120
TasI AATT 8 cut(s) 71, 99, 171, 216, 932, 942, 1154, 1187
TfiI GAWTC 1 cut(s) 625
Tru1I TTAA 4 cut(s) 528, 603, 945, 1143
Tru9I TTAA 4 cut(s) 528, 603, 945, 1143
TseFI GTSAC 3 cut(s) 175, 653, 1088
TseI GCWGC 2 cut(s) 349, 576
Tsp45I GTSAC 3 cut(s) 175, 653, 1088
TspDTI ATGAA 8 cut(s) 101, 110, 441, 461, 923, 1095, 1167, 1199
TspGWI ACGGA 1 cut(s) 523
VneI GTGCAC 1 cut(s) 1042
VpaK11BI GGWCC 2 cut(s) 1165, 1192
XapI RAATTY 1 cut(s) 932
XbaI TCTAGA 1 cut(s) 713
XceI RCATGY 1 cut(s) 1205
XmiI GTMKAC 1 cut(s) 758
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 1 cut(s) 714
Zsp2I ATGCAT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.