Rroxscaffold_6G00421330
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
42524518 .. 42528947
4430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421330.1

Sequence Viewer

Length: 1017 bp
ATGGCTTCTGTGGGTGTGGCACCTACATCAGGTTTGAGAGAACCAAGTGGTCATGCTGTTGGCGTGGATAAGTTGCCCGAGGAGATGAATGACATGAAAATTAGGGATGACAAAGAAATGGAAGCTACTGTTACAGTTGTTGATGGTAATGGAACTGAGACGGGCCATATAATTGTGACGACAATTGGTGGTAGAAATGGTCAGCCAAAGCAGACAATTAGTTACATGGCTGAGCGTGTTGTCGGGCATGGATCATTTGGAGTTGTGTTCCAAGCAAAGTGCTTAGAGACTGGTGAAACTGTTGCTATAAAGAAGGTTCTGCAAGACAAGAGGGCATTATCCTACATTCACCGCTGCATTGGTGTGTGTCATCGGGACATTAAGCCTCAAAACCTTCTGGTGAATCCACATACCCACCAAGTAAAGTTGTGTGACTTTGGAAGTGCAAAAGTTTTGGTAAAAGGAGAGCCAAATATATCTTACATCTGCTCTAGATATTATAGAGCACCAGAACTCATATTTGGAGCAACTGAGTATACTACAGCTATTGACGTCTGGTCTGTTGGATGTGTTCTTGCTGAGCTATTGCTTGGACAGCCTTTGTTTCCCGGCGAGAGTGGAGTCGACCAGCTTGTTGAGATTATCAAGGTATTGGGCACTCCAACAAGGGAGGAAATCAAATGCATGAACCCTAACTATACAGAGTTCAAATTCCCTCAAATTAAAGCTCACCCATGGCACAAGATTTTCCACAAGCGTATGCCTCCAGAAGCTGTTGACCTGGTTTCAAGACTATTGCAATACTCTCCTAACTTGCGGTGCACAGCTCTGGATGCCTTGACCCATCCCTTTTTCGATGAACTTCGTGACTTGAACACCCGCCTGCCAAATGGACGTTTCCTTCCACCTTTGTTCAACTTTAAATCTCATGAATTGAAGGGGGTCCCTGCTGAGATTTTGATGAAATTGGTCCCAGAGCATGCAAGAAAGCAAGTCCCATTCTTTGCGTCCGACTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

338

Amino Acids

37.65

Weight (kDa)

7.65

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 111 - 285 1.2e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 112 - 204 2.2e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 555
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 2 cut(s) 536, 624
AciI CCGC 3 cut(s) 352, 817, 880
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 710
AcyI GRCGYC 1 cut(s) 552
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 5 cut(s) 709, 789, 874, 916, 937
AhdI GACNNNNNGTC 1 cut(s) 556
AjnI CCWGG 1 cut(s) 780
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 7 cut(s) 125, 545, 583, 631, 728, 773, 827
AluI AGCT 7 cut(s) 125, 545, 583, 631, 728, 773, 827
Alw21I GWGCWC 2 cut(s) 508, 824
Alw26I GTCTC 2 cut(s) 152, 281
Alw44I GTGCAC 1 cut(s) 820
AlwI GGATC 1 cut(s) 259
AlwNI CAGNNNCTG 1 cut(s) 773
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 163
ApaLI GTGCAC 1 cut(s) 820
ApeKI GCWGC 1 cut(s) 354
ApoI RAATTY 1 cut(s) 710
AspS9I GGNCC 3 cut(s) 163, 943, 970
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 4 cut(s) 305, 341, 412, 722
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 2 cut(s) 943, 970
BaeGI GKGCMC 2 cut(s) 659, 824
BanI GGYRCC 1 cut(s) 19
Bbv12I GWGCWC 2 cut(s) 508, 824
BbvI GCAGC 1 cut(s) 341
BccI CCATC 2 cut(s) 137, 852
BciT130I CCWGG 1 cut(s) 782
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 2 cut(s) 152, 281
BfaI CTAG 2 cut(s) 492, 1015
BfmI CTRYAG 1 cut(s) 540
BisI GCNGC 1 cut(s) 355
BlpI GCTNAGC 2 cut(s) 231, 579
BlsI GCNGC 1 cut(s) 356
Bme1390I CCNGG 2 cut(s) 609, 782
Bme18I GGWCC 2 cut(s) 943, 970
BmeRI GACNNNNNGTC 1 cut(s) 556
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 3 cut(s) 163, 943, 970
BmiI GGNNCC 4 cut(s) 21, 944, 945, 972
BmrFI CCNGG 2 cut(s) 609, 782
BmsI GCATC 1 cut(s) 823
BpmI CTGGAG 1 cut(s) 750
Bpu1102I GCTNAGC 2 cut(s) 231, 579
BpuMI CCSGG 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 552
BsaJI CCNNGG 2 cut(s) 78, 734
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 782
BseDI CCNNGG 2 cut(s) 78, 734
BseGI GGATG 4 cut(s) 112, 572, 838, 844
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 5 cut(s) 147, 222, 522, 570, 942
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 2 cut(s) 659, 824
BseXI GCAGC 1 cut(s) 341
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 508, 824
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 609
BslFI GGGAC 4 cut(s) 389, 929, 956, 980
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 152, 281
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 4 cut(s) 389, 929, 956, 980
BsnI GGCC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 3 cut(s) 508, 659, 824
Bsp143I GATC 1 cut(s) 251
Bsp1720I GCTNAGC 2 cut(s) 231, 579
Bsp19I CCATGG 1 cut(s) 734
BspACI CCGC 3 cut(s) 352, 817, 880
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 5 cut(s) 148, 223, 523, 571, 943
BspHI TCATGA 1 cut(s) 928
BspLI GGNNCC 4 cut(s) 21, 944, 945, 972
BspPI GGATC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 19
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 78, 734
BssMI GATC 1 cut(s) 251
BssNAI GTATAC 1 cut(s) 537
BssNI GRCGYC 1 cut(s) 552
BssT1I CCWWGG 1 cut(s) 734
Bst1107I GTATAC 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 3 cut(s) 130, 136, 301
BstACI GRCGYC 1 cut(s) 552
BstC8I GCNNGC 2 cut(s) 884, 981
BstDEI CTNAG 6 cut(s) 156, 231, 283, 531, 579, 951
BstDSI CCRYGG 1 cut(s) 734
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 4 cut(s) 112, 572, 838, 844
BstKTI GATC 1 cut(s) 254
BstMAI GTCTC 2 cut(s) 152, 281
BstMBI GATC 1 cut(s) 251
BstMWI GCNNNNNNNGC 2 cut(s) 595, 833
BstNI CCWGG 1 cut(s) 782
BstNSI RCATGY 1 cut(s) 983
BstSCI CCNGG 2 cut(s) 607, 780
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 2 cut(s) 659, 824
BstV1I GCAGC 1 cut(s) 341
BstZ17I GTATAC 1 cut(s) 537
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 734
BtsCI GGATG 4 cut(s) 112, 572, 838, 844
Cac8I GCNNGC 2 cut(s) 884, 981
CaiI CAGNNNCTG 1 cut(s) 773
CciI TCATGA 1 cut(s) 928
Cfr13I GGNCC 3 cut(s) 163, 943, 970
CseI GACGC 1 cut(s) 996
CsiI ACCWGGT 1 cut(s) 780
CviAII CATG 8 cut(s) 53, 94, 226, 248, 685, 735, 929, 980
DdeI CTNAG 6 cut(s) 156, 231, 283, 531, 579, 951
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
DraI TTTAAA 1 cut(s) 922
DriI GACNNNNNGTC 1 cut(s) 556
Eam1105I GACNNNNNGTC 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 734
Eco47I GGWCC 2 cut(s) 943, 970
Eco88I CYCGRG 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 943
EcoRII CCWGG 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 734
EcoT22I ATGCAT 1 cut(s) 686
ErhI CCWWGG 1 cut(s) 734
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 8 cut(s) 56, 97, 229, 251, 688, 738, 932, 983
FaqI GGGAC 4 cut(s) 389, 929, 956, 980
FatI CATG 8 cut(s) 52, 93, 225, 247, 684, 734, 928, 979
FauI CCCGC 1 cut(s) 887
FblI GTMKAC 2 cut(s) 536, 624
Fnu4HI GCNGC 1 cut(s) 355
FokI GGATG 4 cut(s) 119, 579, 831, 845
Fsp4HI GCNGC 1 cut(s) 355
FspBI CTAG 2 cut(s) 492, 1015
GluI GCNGC 1 cut(s) 355
GsuI CTGGAG 1 cut(s) 750
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 609
HgaI GACGC 1 cut(s) 996
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 8 cut(s) 56, 97, 229, 251, 688, 738, 932, 983
HincII GTYRAC 2 cut(s) 625, 778
HindII GTYRAC 2 cut(s) 625, 778
HinfI GANTC 2 cut(s) 403, 621
HpaII CCGG 1 cut(s) 609
HphI GGTGA 4 cut(s) 305, 341, 412, 722
Hpy166II GTNNAC 4 cut(s) 537, 625, 778, 822
Hpy188I TCNGA 1 cut(s) 1012
Hpy188III TCNNGA 7 cut(s) 374, 492, 767, 789, 830, 866, 929
Hpy8I GTNNAC 4 cut(s) 537, 625, 778, 822
HpyAV CCTTC 4 cut(s) 307, 404, 911, 931
HpyCH4III ACNGT 3 cut(s) 130, 136, 301
HpyCH4IV ACGT 2 cut(s) 552, 895
HpyCH4V TGCA 7 cut(s) 322, 357, 446, 684, 799, 822, 983
HpyF10VI GCNNNNNNNGC 2 cut(s) 595, 833
HpyF3I CTNAG 6 cut(s) 156, 231, 283, 531, 579, 951
HpySE526I ACGT 2 cut(s) 552, 895
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 8 cut(s) 56, 97, 229, 251, 688, 738, 932, 983
KflI GGGWCCC 1 cut(s) 943
Kzo9I GATC 1 cut(s) 251
LmnI GCTCC 1 cut(s) 524
Lsp1109I GCAGC 1 cut(s) 341
LweI GCATC 1 cut(s) 823
MabI ACCWGGT 1 cut(s) 780
MaeI CTAG 2 cut(s) 492, 1015
MaeII ACGT 2 cut(s) 552, 895
MaeIII GTNAC 5 cut(s) 130, 175, 221, 431, 866
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 3 cut(s) 508, 659, 824
MluCI AATT 8 cut(s) 99, 171, 183, 216, 710, 720, 932, 965
MlyI GAGTC 1 cut(s) 630
MmeI TCCRAC 2 cut(s) 544, 686
MnlI CCTC 6 cut(s) 73, 324, 396, 664, 726, 774
Mph1103I ATGCAT 1 cut(s) 686
MseI TTAA 3 cut(s) 381, 723, 921
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 354
MspI CCGG 1 cut(s) 609
MspR9I CCNGG 2 cut(s) 609, 782
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 782
MwoI GCNNNNNNNGC 2 cut(s) 595, 833
NciI CCSGG 1 cut(s) 609
NcoI CCATGG 1 cut(s) 734
NdeII GATC 1 cut(s) 251
NlaIII CATG 8 cut(s) 56, 97, 229, 251, 688, 738, 932, 983
NlaIV GGNNCC 4 cut(s) 21, 944, 945, 972
NmuCI GTSAC 3 cut(s) 175, 431, 866
NsiI ATGCAT 1 cut(s) 686
NspI RCATGY 1 cut(s) 983
PaeI GCATGC 1 cut(s) 983
PagI TCATGA 1 cut(s) 928
PfeI GAWTC 1 cut(s) 403
PkrI GCNGC 1 cut(s) 356
PleI GAGTC 1 cut(s) 629
PpsI GAGTC 1 cut(s) 629
PpuMI RGGWCCY 1 cut(s) 943
Psp5II RGGWCCY 1 cut(s) 943
Psp6I CCWGG 1 cut(s) 780
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 4 cut(s) 21, 944, 945, 972
PspPI GGNCC 3 cut(s) 163, 943, 970
PspPPI RGGWCCY 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 773
RseI CAYNNNNRTG 1 cut(s) 362
SalI GTCGAC 1 cut(s) 623
SaqAI TTAA 3 cut(s) 381, 723, 921
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 1 cut(s) 251
Sau96I GGNCC 3 cut(s) 163, 943, 970
SchI GAGTC 1 cut(s) 630
ScrFI CCNGG 2 cut(s) 609, 782
SduI GDGCHC 3 cut(s) 508, 659, 824
SexAI ACCWGGT 1 cut(s) 780
SfaNI GCATC 1 cut(s) 823
SfcI CTRYAG 1 cut(s) 540
SinI GGWCC 2 cut(s) 943, 970
SmiMI CAYNNNNRTG 1 cut(s) 362
SphI GCATGC 1 cut(s) 983
Sse9I AATT 8 cut(s) 99, 171, 183, 216, 710, 720, 932, 965
SsiI CCGC 3 cut(s) 352, 817, 880
SspMI CTAG 2 cut(s) 492, 1015
StyD4I CCNGG 2 cut(s) 607, 780
StyI CCWWGG 1 cut(s) 734
TaaI ACNGT 3 cut(s) 130, 136, 301
TaiI ACGT 2 cut(s) 555, 898
TaqI TCGA 2 cut(s) 624, 855
TasI AATT 8 cut(s) 99, 171, 183, 216, 710, 720, 932, 965
TfiI GAWTC 1 cut(s) 403
Tru1I TTAA 3 cut(s) 381, 723, 921
Tru9I TTAA 3 cut(s) 381, 723, 921
TseFI GTSAC 3 cut(s) 175, 431, 866
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 3 cut(s) 175, 431, 866
TspDTI ATGAA 6 cut(s) 101, 110, 701, 873, 945, 977
VneI GTGCAC 1 cut(s) 820
VpaK11BI GGWCC 2 cut(s) 943, 970
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 1 cut(s) 710
XbaI TCTAGA 1 cut(s) 491
XceI RCATGY 1 cut(s) 983
XmiI GTMKAC 2 cut(s) 536, 624
XspI CTAG 2 cut(s) 492, 1015
ZraI GACGTC 1 cut(s) 553
Zsp2I ATGCAT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.