Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0005949

Physical Location & Seq

Genomic Coordinates Reverse (-)

6844697 .. 6847760

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG088300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTTCTGTGGGTGTGGCACCTACATCAGGTTTGAGAGAACCAAGTGGTCATGCTGTTGGCGTGGATAAGTTGCCCGAGGAGATGAATGACATGAAAATTAGGGATGACAAAGAAATGGAAGCTACTGTTACAGTTGTTGATGGTAATGGAACCGAGACGGGCCATATAATTGTGACAACAATTGGTGGTAGAAATGGTCAGCCAAAGCAGATCTTCAGGGCATTATCCTACATTCACCGCTGCATTGGTGTGTGTCATCGGGACATTAAGCCTCAAAACCTTCTGGTGAATCCACATACCCACCAAGTAAAGTTGTGTGACTTTGGAAGTGCAAAAGTTTTGGTAAAAGGAGAGCCAAATATATCTTACATCTGCTCTAGATATTATAGAGCACCAGAACTCATATTTGGAGCAACTGAGTATACTACAGCTATTGACGTCTGGTCTGTTGGATGTGTTCTTGCTGAGCTATTGCTTGGACAGCCGTTGTTTCCCGGTGAGAGTGGAGTCGACCAGCTTGTTGAGATTATCAAGGTATTGGGCACTCCAACAAGGGAGGAAATCAAATGCATGAACCCTAACTATACGGAGTTCAAATTCCCTCAAATTAAAGCTCACCCTTGGCACAAGATTTTCCACAAGCGTATGCCTCCAGAAGCTGTTGACCTGGTTTCAAGACTATTGCAATACTCTCCTAACTTGCGGTGCACAGCTCTGGATGCCTTGACCCATCCCTTTTTCGATGAACTACGTGACTTGAACACCCGCCTGCCAAATGGACGTTTCCTTCCACCTTTGTTCAACTTTAAATCTCATGAATTGAAGGGGGTCCCTGCTGAGATTTTGATGAAATTGGTCCCAGAGCATGCAAGAAAGCAAGTCCCATTCTTTGCGTCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032502 GO:0036211 GO:0042538 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0047484 GO:0048507 GO:0048518 GO:0048532 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050896 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1901000 GO:1901002 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

301

Amino Acids

33.69

Weight (kDa)

7.19

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	70 - 248	2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	70 - 167	2.1e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05840 AT3G05840 AT5G26751
fragaria_vesca	FvH4_6g08170 FvH4_6g08170 FvH4_6g08170 FvH4_6g08170 FvH4_6g08170
malus_domestica	MD04G1189400.v1.1 MD12G1202200.v1.1
prunus_persica	Prupe.6G307000_v2.0.a1 Prupe.6G307000_v2.0.a1 Prupe.6G307000_v2.0.a1 Prupe.6G307000_v2.0.a1 Prupe.6G307000_v2.0.a1 Prupe.6G307000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0458041
rosa_multiflora	Rmu_sc0000384.1_g000013
rosa_roxburghii	Rroxscaffold_6G00421330
rosa_rugosa	Rorug03G0024500 Rorug03G0024600
rosa_samantha	Rh3AG085000 Rh3BG087800 Rh3CG088300 Rh3DG088700
rosa_wichuraiana	Rw0G012420 Rw3G007240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	2 cut(s)	425, 513
AciI	CCGC	3 cut(s)	241, 706, 769
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	5 cut(s)	598, 678, 763, 805, 826
AhdI	GACNNNNNGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	669
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AluBI	AGCT	7 cut(s)	125, 434, 472, 520, 617, 662, 716
AluI	AGCT	7 cut(s)	125, 434, 472, 520, 617, 662, 716
Alw21I	GWGCWC	2 cut(s)	397, 713
Alw26I	GTCTC	1 cut(s)	152
Alw44I	GTGCAC	1 cut(s)	709
AlwNI	CAGNNNCTG	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	163
ApaLI	GTGCAC	1 cut(s)	709
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	599
AspS9I	GGNCC	3 cut(s)	163, 832, 859
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	4 cut(s)	230, 301, 512, 611
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	832, 859
BaeGI	GKGCMC	2 cut(s)	548, 713
BanI	GGYRCC	1 cut(s)	19
Bbv12I	GWGCWC	2 cut(s)	397, 713
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	2 cut(s)	137, 741
BceAI	ACGGC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	671
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	381, 904
BfmI	CTRYAG	1 cut(s)	429
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	1 cut(s)	244
BlpI	GCTNAGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	2 cut(s)	498, 671
Bme18I	GGWCC	2 cut(s)	832, 859
BmeRI	GACNNNNNGTC	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	3 cut(s)	163, 832, 859
BmiI	GGNNCC	5 cut(s)	21, 154, 833, 834, 861
BmrFI	CCNGG	2 cut(s)	498, 671
BmsI	GCATC	1 cut(s)	712
BpmI	CTGGAG	1 cut(s)	639
Bpu1102I	GCTNAGC	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	755
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	78, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	671
BseDI	CCNNGG	2 cut(s)	78, 623
BseGI	GGATG	4 cut(s)	112, 461, 727, 733
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	3 cut(s)	411, 459, 831
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	2 cut(s)	548, 713
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	2 cut(s)	397, 713
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	498
BslFI	GGGAC	4 cut(s)	278, 818, 845, 869
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	4 cut(s)	278, 818, 845, 869
BsnI	GGCC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	3 cut(s)	397, 548, 713
Bsp143I	GATC	1 cut(s)	213
Bsp1720I	GCTNAGC	1 cut(s)	468
BspACI	CCGC	3 cut(s)	241, 706, 769
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	3 cut(s)	412, 460, 832
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	5 cut(s)	21, 154, 833, 834, 861
BspT107I	GGYRCC	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	78, 623
BssMI	GATC	1 cut(s)	213
BssNAI	GTATAC	1 cut(s)	426
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	623
Bst1107I	GTATAC	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	2 cut(s)	130, 136
BstACI	GRCGYC	1 cut(s)	441
BstBAI	YACGTR	1 cut(s)	755
BstC8I	GCNNGC	2 cut(s)	773, 870
BstDEI	CTNAG	3 cut(s)	420, 468, 840
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	112, 461, 727, 733
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	484, 722
BstNI	CCWGG	1 cut(s)	671
BstNSI	RCATGY	1 cut(s)	872
BstSCI	CCNGG	2 cut(s)	496, 669
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	2 cut(s)	548, 713
BstV1I	GCAGC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BstZ17I	GTATAC	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	112, 461, 727, 733
Cac8I	GCNNGC	2 cut(s)	773, 870
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	1 cut(s)	817
Cfr13I	GGNCC	3 cut(s)	163, 832, 859
CseI	GACGC	1 cut(s)	885
CsiI	ACCWGGT	1 cut(s)	669
CviAII	CATG	5 cut(s)	53, 94, 574, 818, 869
DdeI	CTNAG	3 cut(s)	420, 468, 840
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
DraI	TTTAAA	1 cut(s)	811
DriI	GACNNNNNGTC	1 cut(s)	445
Eam1105I	GACNNNNNGTC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	623
Eco47I	GGWCC	2 cut(s)	832, 859
Eco57I	CTGAAG	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	623
EcoT22I	ATGCAT	1 cut(s)	575
ErhI	CCWWGG	1 cut(s)	623
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	5 cut(s)	56, 97, 577, 821, 872
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	4 cut(s)	278, 818, 845, 869
FatI	CATG	5 cut(s)	52, 93, 573, 817, 868
FauI	CCCGC	1 cut(s)	776
FblI	GTMKAC	2 cut(s)	425, 513
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	4 cut(s)	119, 468, 720, 734
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	2 cut(s)	381, 904
GluI	GCNGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	498
HgaI	GACGC	1 cut(s)	885
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	5 cut(s)	56, 97, 577, 821, 872
HincII	GTYRAC	2 cut(s)	514, 667
HindII	GTYRAC	2 cut(s)	514, 667
HinfI	GANTC	2 cut(s)	292, 510
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	4 cut(s)	230, 301, 512, 611
Hpy166II	GTNNAC	4 cut(s)	426, 514, 667, 711
Hpy188I	TCNGA	1 cut(s)	901
Hpy188III	TCNNGA	6 cut(s)	263, 381, 656, 678, 719, 818
Hpy8I	GTNNAC	4 cut(s)	426, 514, 667, 711
HpyAV	CCTTC	3 cut(s)	293, 800, 820
HpyCH4III	ACNGT	2 cut(s)	130, 136
HpyCH4IV	ACGT	3 cut(s)	441, 754, 784
HpyCH4V	TGCA	6 cut(s)	246, 335, 573, 688, 711, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	484, 722
HpyF3I	CTNAG	3 cut(s)	420, 468, 840
HpySE526I	ACGT	3 cut(s)	441, 754, 784
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	5 cut(s)	56, 97, 577, 821, 872
KflI	GGGWCCC	1 cut(s)	832
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	712
MabI	ACCWGGT	1 cut(s)	669
MaeI	CTAG	2 cut(s)	381, 904
MaeII	ACGT	3 cut(s)	441, 754, 784
MaeIII	GTNAC	4 cut(s)	130, 175, 320, 755
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	1 cut(s)	208
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	397, 548, 713
MluCI	AATT	7 cut(s)	99, 171, 183, 599, 609, 821, 854
MlyI	GAGTC	1 cut(s)	519
MmeI	TCCRAC	2 cut(s)	433, 575
MnlI	CCTC	5 cut(s)	73, 285, 553, 615, 663
Mph1103I	ATGCAT	1 cut(s)	575
MseI	TTAA	3 cut(s)	270, 612, 810
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	2 cut(s)	498, 671
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	671
MwoI	GCNNNNNNNGC	2 cut(s)	484, 722
NciI	CCSGG	1 cut(s)	498
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	5 cut(s)	56, 97, 577, 821, 872
NlaIV	GGNNCC	5 cut(s)	21, 154, 833, 834, 861
NmuCI	GTSAC	3 cut(s)	175, 320, 755
NsiI	ATGCAT	1 cut(s)	575
NspI	RCATGY	1 cut(s)	872
PaeI	GCATGC	1 cut(s)	872
PagI	TCATGA	1 cut(s)	817
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
Ppu21I	YACGTR	1 cut(s)	755
PpuMI	RGGWCCY	1 cut(s)	832
Psp5II	RGGWCCY	1 cut(s)	832
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	5 cut(s)	21, 154, 833, 834, 861
PspPI	GGNCC	3 cut(s)	163, 832, 859
PspPPI	RGGWCCY	1 cut(s)	832
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	251
SalI	GTCGAC	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	270, 612, 810
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	3 cut(s)	163, 832, 859
SchI	GAGTC	1 cut(s)	519
ScrFI	CCNGG	2 cut(s)	498, 671
SduI	GDGCHC	3 cut(s)	397, 548, 713
SexAI	ACCWGGT	1 cut(s)	669
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	2 cut(s)	832, 859
SmiMI	CAYNNNNRTG	1 cut(s)	251
SphI	GCATGC	1 cut(s)	872
Sse9I	AATT	7 cut(s)	99, 171, 183, 599, 609, 821, 854
SsiI	CCGC	3 cut(s)	241, 706, 769
SspMI	CTAG	2 cut(s)	381, 904
StyD4I	CCNGG	2 cut(s)	496, 669
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	2 cut(s)	130, 136
TaiI	ACGT	3 cut(s)	444, 757, 787
TaqI	TCGA	2 cut(s)	513, 744
TasI	AATT	7 cut(s)	99, 171, 183, 599, 609, 821, 854
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	3 cut(s)	270, 612, 810
Tru9I	TTAA	3 cut(s)	270, 612, 810
TseFI	GTSAC	3 cut(s)	175, 320, 755
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	3 cut(s)	175, 320, 755
TspDTI	ATGAA	6 cut(s)	101, 110, 590, 762, 834, 866
TspGWI	ACGGA	1 cut(s)	605
VneI	GTGCAC	1 cut(s)	709
VpaK11BI	GGWCC	2 cut(s)	832, 859
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	599
XbaI	TCTAGA	1 cut(s)	380
XceI	RCATGY	1 cut(s)	872
XmiI	GTMKAC	2 cut(s)	425, 513
XspI	CTAG	2 cut(s)	381, 904
ZraI	GACGTC	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.