FvH4_6g08300

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008145
Physical Location & Seq
Reverse (-)
4921630 .. 4924912
3283 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08300.t6

Sequence Viewer

Length: 1437 bp
ATGGAATTCCTTGCAAGTTCTCGAGAAAGAGTGATAGATAGGTTCACGAACCTTCCTAATGATGTTGCATGTCATATTCTATCTTTTGTCAGTTTTAGAGACAGTGCTCGTGTGGGATGCCTGTCCAGAAGGTGTAAAGAGTTGTATCTAGGCGTTCGGAACTTGGATTTTGATTCGGCCCATGCAAATTACGCGTGGGATAGGTTTAGGTTGTTGAATTGTTTGGATAGGTTCATGCTTCAACGTGGGGAGAAGGACATAAACAAGTTTCGTATTCATTGGATCTTTGACAGAGAAAACAATGATGAGTATTTTCGAATAATGTCATGGATCAGTTATGCAGTGAAGTGCAATGTTGGAAGTCTTATTATTGAGCTCAGTATGTTTGGGGAGATGACATTAGAATTGCCGTCTTGCATCTTTCATTGCAAGTCTCTGAGGCATCTAATTGTGGATGTATTAAACAGAGGAGGGAAGGTTCTTAAGATGCCTTCCTTGGCTTGTTATAGTAATCTCCAATCCTTAAAACTGAAAAATGTTACTATTCAGGAAGAGTTTGGTAAATGGATCTCGGAGTGTTGCAAAAGCATAAAGGAATTATCACTTGAACAGGTATTCAAGACAGAAAGGATCAGCATCGAAAGCCTATCTCTGGAATCATTCAGTATTGCGTGTAATTATCTTGTGTGTTCTAAAGATCTCCTTAAGCTCTCTGTCCTTAACATCTCAGGTGAAAAATTGGCAAAGATATCTATAGTGTGGCAAGCACCTGGTGGCATAGATTATCTTCAGATTTTTTCCCCTAACGTTAAAGATTTGACATTGATCGGGATTTTCAGAAATTACATTTCGTTAGGGACCTTAATGTGCTTAGAAAAGTCAATAATTAGTCCAGTAGGCATATATGATTCTAACAAGGCGCTTGAGGTTCTTTGCAGTGTAAGCAGAGCTAAAGTTCTCAATCTGATGGGAGACATCATTAAGTTACTGCAGGTTGTGTTCAGGGATGGCTGCAGGACACCACCCTTGGATAATGTTTGTTGCTTTTCTGTGCTGTCTGTGTTTAGCTCTTTGAGTGACGACCTTGTCCCACCTATGGCCACTCTTCTTAAAACCATGCCTAATCTGATTGATTTGCAATTAAGTAGTGCAGTAATCTCTGTAAACTCCCGAACTAGTTCATCTGGGTTCAATATCAGCTATTGGAAATCCCTGAACCTGGCTTTTGTTGATCGTCTTCAGAATGCAACACTTTCAATTTTGAATGGGAATAATGAAGTGGAGTTTGCAGCTTATTTGCTCGAAAATGCAACAAATTTAAAGAAAATGGTCATTTATCATTCTGGCCAACATAGTGCTATAAGGTGGCTTCAAAATAAAAGTGTCTGCTCTTCCACCGCCAATGTTTTTTTTATGGAACTAGTCAAAAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

479

Amino Acids

54.2

Weight (kDa)

8.63

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 109 - 225 2.8e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1085
Acc36I ACCTGC 1 cut(s) 982
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 1398
AclI AACGTT 1 cut(s) 807
AclWI GGATC 4 cut(s) 290, 338, 575, 638
AcoI YGGCCR 2 cut(s) 1098, 1345
AcsI RAATTY 2 cut(s) 5, 1315
AcuI CTGAAG 2 cut(s) 773, 1223
AdeI CACNNNGTG 1 cut(s) 773
AfiI CCNNNNNNNGG 3 cut(s) 652, 1096, 1219
AflII CTTAAG 2 cut(s) 482, 704
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 8 cut(s) 217, 242, 608, 619, 1192, 1257, 1264, 1373
AhlI ACTAGT 2 cut(s) 1175, 1420
AjnI CCWGG 2 cut(s) 769, 1218
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 6 cut(s) 376, 709, 950, 1068, 1200, 1292
AluI AGCT 6 cut(s) 376, 709, 950, 1068, 1200, 1292
Alw21I GWGCWC 2 cut(s) 109, 378
Alw26I GTCTC 3 cut(s) 93, 438, 966
AlwI GGATC 4 cut(s) 290, 338, 575, 638
Ama87I CYCGRG 1 cut(s) 21
AoxI GGCC 3 cut(s) 177, 1098, 1345
ApeKI GCWGC 2 cut(s) 1011, 1289
ApoI RAATTY 2 cut(s) 5, 1315
Asp700I GAANNNNTTC 1 cut(s) 1177
AspLEI GCGC 1 cut(s) 922
AspS9I GGNCC 2 cut(s) 178, 858
AsuHPI GGTGA 1 cut(s) 743
AsuII TTCGAA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 21
AvaII GGWCC 1 cut(s) 858
BalI TGGCCA 2 cut(s) 1100, 1347
BanII GRGCYC 1 cut(s) 378
BauI CACGAG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 1229
Bbv12I GWGCWC 2 cut(s) 109, 378
BbvI GCAGC 2 cut(s) 998, 1301
BccI CCATC 2 cut(s) 961, 1001
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 2 cut(s) 771, 1220
BcoDI GTCTC 3 cut(s) 93, 438, 966
BcuI ACTAGT 2 cut(s) 1175, 1420
BfaI CTAG 3 cut(s) 149, 1176, 1421
BfmI CTRYAG 3 cut(s) 753, 989, 1012
BfoI RGCGCY 1 cut(s) 923
BfrI CTTAAG 2 cut(s) 482, 704
BfuAI ACCTGC 1 cut(s) 982
BglII AGATCT 1 cut(s) 697
BisI GCNGC 2 cut(s) 1012, 1290
BlsI GCNGC 2 cut(s) 1013, 1291
Bme1390I CCNGG 2 cut(s) 771, 1220
Bme18I GGWCC 1 cut(s) 858
BmeT110I CYCGRG 1 cut(s) 21
BmgT120I GGNCC 2 cut(s) 178, 858
BmiI GGNNCC 1 cut(s) 859
BmrFI CCNGG 2 cut(s) 771, 1220
BmsI GCATC 5 cut(s) 107, 426, 451, 477, 645
BpiI GAAGAC 1 cut(s) 1229
Bpu14I TTCGAA 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 635
BsaJI CCNNGG 2 cut(s) 495, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 3 cut(s) 652, 1096, 1219
Bse1I ACTGG 1 cut(s) 893
Bse3DI GCAATG 2 cut(s) 358, 424
Bse8I GATNNNNATC 1 cut(s) 635
BseBI CCWGG 2 cut(s) 771, 1220
BseDI CCNNGG 2 cut(s) 495, 1026
BseGI GGATG 3 cut(s) 122, 460, 1012
BseJI GATNNNNATC 1 cut(s) 635
BseLI CCNNNNNNNGG 3 cut(s) 652, 1096, 1219
BseMI GCAATG 2 cut(s) 358, 424
BseMII CTCAG 3 cut(s) 391, 428, 741
BseNI ACTGG 1 cut(s) 893
BseRI GAGGAG 1 cut(s) 483
BseXI GCAGC 2 cut(s) 998, 1301
BsgI GTGCAG 1 cut(s) 1170
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 3 cut(s) 179, 1100, 1347
BsiHKAI GWGCWC 2 cut(s) 109, 378
BsiHKCI CYCGRG 1 cut(s) 21
BslFI GGGAC 2 cut(s) 871, 1073
BslI CCNNNNNNNGG 3 cut(s) 652, 1096, 1219
BsmAI GTCTC 3 cut(s) 93, 438, 966
BsmFI GGGAC 2 cut(s) 871, 1073
BsmI GAATGC 1 cut(s) 1249
BsnI GGCC 3 cut(s) 179, 1100, 1347
BsoBI CYCGRG 1 cut(s) 21
Bsp119I TTCGAA 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 109, 378
Bsp143I GATC 7 cut(s) 282, 330, 567, 630, 697, 825, 1231
BspACI CCGC 1 cut(s) 1398
BspANI GGCC 3 cut(s) 179, 1100, 1347
BspCNI CTCAG 3 cut(s) 390, 429, 740
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 859
BspMAI CTGCAG 2 cut(s) 993, 1016
BspMI ACCTGC 1 cut(s) 982
BspPI GGATC 4 cut(s) 290, 338, 575, 638
BspQI GCTCTTC 1 cut(s) 1396
BspT104I TTCGAA 1 cut(s) 316
BspTI CTTAAG 2 cut(s) 482, 704
BsrDI GCAATG 2 cut(s) 358, 424
BsrI ACTGG 1 cut(s) 893
BssECI CCNNGG 2 cut(s) 495, 1026
BssMI GATC 7 cut(s) 282, 330, 567, 630, 697, 825, 1231
BssSI CACGAG 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 495, 1026
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 771, 1220
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 3 cut(s) 546, 1110, 1396
BstAFI CTTAAG 2 cut(s) 482, 704
BstBI TTCGAA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 765
BstDEI CTNAG 4 cut(s) 377, 437, 727, 871
BstF5I GGATG 3 cut(s) 122, 460, 1012
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 923
BstHHI GCGC 1 cut(s) 922
BstKTI GATC 7 cut(s) 285, 333, 570, 633, 700, 828, 1234
BstMAI GTCTC 3 cut(s) 93, 438, 966
BstMBI GATC 7 cut(s) 282, 330, 567, 630, 697, 825, 1231
BstMWI GCNNNNNNNGC 3 cut(s) 191, 642, 942
BstNI CCWGG 2 cut(s) 771, 1220
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 769, 1218
BstSFI CTRYAG 3 cut(s) 753, 989, 1012
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 998, 1301
BstV2I GAAGAC 1 cut(s) 1229
BstX2I RGATCY 3 cut(s) 282, 567, 697
BstYI RGATCY 3 cut(s) 282, 567, 697
BsuRI GGCC 3 cut(s) 179, 1100, 1347
BtsCI GGATG 3 cut(s) 122, 460, 1012
BtsI GCAGTG 2 cut(s) 348, 943
BtsIMutI CAGTG 3 cut(s) 109, 348, 943
BveI ACCTGC 1 cut(s) 982
Cac8I GCNNGC 1 cut(s) 765
CfoI GCGC 1 cut(s) 922
Cfr13I GGNCC 2 cut(s) 178, 858
CsiI ACCWGGT 1 cut(s) 769
CviAII CATG 5 cut(s) 69, 182, 235, 327, 1117
DdeI CTNAG 4 cut(s) 377, 437, 727, 871
DpnI GATC 7 cut(s) 284, 332, 569, 632, 699, 827, 1233
DpnII GATC 7 cut(s) 282, 330, 567, 630, 697, 825, 1231
DraI TTTAAA 1 cut(s) 1320
DraIII CACNNNGTG 1 cut(s) 773
DrdI GACNNNNNNGTC 1 cut(s) 1085
DseDI GACNNNNNNGTC 1 cut(s) 1085
EaeI YGGCCR 2 cut(s) 1098, 1345
Eam1104I CTCTTC 3 cut(s) 546, 1110, 1396
EarI CTCTTC 3 cut(s) 546, 1110, 1396
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 2 cut(s) 495, 1026
Eco24I GRGCYC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 750
Eco47I GGWCC 1 cut(s) 858
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 773, 1223
Eco88I CYCGRG 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 858
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 769, 1218
EcoRV GATATC 1 cut(s) 750
EcoT14I CCWWGG 2 cut(s) 495, 1026
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 2 cut(s) 495, 1026
FaeI CATG 5 cut(s) 72, 185, 238, 330, 1120
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FaqI GGGAC 2 cut(s) 871, 1073
FatI CATG 5 cut(s) 68, 181, 234, 326, 1116
Fnu4HI GCNGC 2 cut(s) 1012, 1290
FokI GGATG 3 cut(s) 129, 467, 1019
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 2 cut(s) 1012, 1290
FspBI CTAG 3 cut(s) 149, 1176, 1421
GlaI GCGC 1 cut(s) 921
GluI GCNGC 2 cut(s) 1012, 1290
HaeII RGCGCY 1 cut(s) 923
HaeIII GGCC 3 cut(s) 179, 1100, 1347
HhaI GCGC 1 cut(s) 922
Hin1II CATG 5 cut(s) 72, 185, 238, 330, 1120
Hin6I GCGC 1 cut(s) 920
HinP1I GCGC 1 cut(s) 920
HinfI GANTC 3 cut(s) 173, 656, 908
HphI GGTGA 1 cut(s) 743
Hpy166II GTNNAC 2 cut(s) 45, 1165
Hpy188I TCNGA 8 cut(s) 159, 438, 574, 792, 839, 966, 1128, 1242
Hpy188III TCNNGA 9 cut(s) 21, 23, 46, 126, 548, 619, 653, 829, 1170
Hpy8I GTNNAC 2 cut(s) 45, 1165
HpyAV CCTTC 5 cut(s) 62, 123, 247, 469, 501
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 2 cut(s) 244, 807
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 642, 942
HpyF3I CTNAG 4 cut(s) 377, 437, 727, 871
HpySE526I ACGT 2 cut(s) 244, 807
Hsp92II CATG 5 cut(s) 72, 185, 238, 330, 1120
HspAI GCGC 1 cut(s) 920
Kzo9I GATC 7 cut(s) 282, 330, 567, 630, 697, 825, 1231
LguI GCTCTTC 1 cut(s) 1396
Lsp1109I GCAGC 2 cut(s) 998, 1301
LweI GCATC 5 cut(s) 107, 426, 451, 477, 645
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 3 cut(s) 149, 1176, 1421
MaeII ACGT 2 cut(s) 244, 807
MaeIII GTNAC 3 cut(s) 538, 984, 1076
MalI GATC 7 cut(s) 284, 332, 569, 632, 699, 827, 1233
MboI GATC 7 cut(s) 282, 330, 567, 630, 697, 825, 1231
MboII GAAGA 5 cut(s) 563, 779, 1097, 1229, 1383
MflI RGATCY 3 cut(s) 282, 567, 697
MhlI GDGCHC 2 cut(s) 109, 378
MlsI TGGCCA 2 cut(s) 1100, 1347
MluI ACGCGT 1 cut(s) 192
MluNI TGGCCA 2 cut(s) 1100, 1347
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 4 cut(s) 432, 461, 464, 919
Mox20I TGGCCA 2 cut(s) 1100, 1347
MroXI GAANNNNTTC 1 cut(s) 1177
MscI TGGCCA 2 cut(s) 1100, 1347
Msp20I TGGCCA 2 cut(s) 1100, 1347
MspCI CTTAAG 2 cut(s) 482, 704
MspR9I CCNGG 2 cut(s) 771, 1220
Mva1269I GAATGC 1 cut(s) 1249
MvaI CCWGG 2 cut(s) 771, 1220
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 191, 642, 942
NdeII GATC 7 cut(s) 282, 330, 567, 630, 697, 825, 1231
NlaIII CATG 5 cut(s) 72, 185, 238, 330, 1120
NlaIV GGNNCC 1 cut(s) 859
NmuCI GTSAC 1 cut(s) 1076
NspI RCATGY 1 cut(s) 72
NspV TTCGAA 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 1396
PctI GAATGC 1 cut(s) 1249
PdmI GAANNNNTTC 1 cut(s) 1177
PfeI GAWTC 3 cut(s) 173, 656, 908
PflFI GACNNNGTC 1 cut(s) 1085
PkrI GCNGC 2 cut(s) 1013, 1291
PpuMI RGGWCCY 1 cut(s) 858
Psp124BI GAGCTC 1 cut(s) 378
Psp1406I AACGTT 1 cut(s) 807
Psp5II RGGWCCY 1 cut(s) 858
Psp6I CCWGG 2 cut(s) 769, 1218
PspGI CCWGG 2 cut(s) 769, 1218
PspN4I GGNNCC 1 cut(s) 859
PspPI GGNCC 2 cut(s) 178, 858
PspPPI RGGWCCY 1 cut(s) 858
PstI CTGCAG 2 cut(s) 993, 1016
PsuI RGATCY 3 cut(s) 282, 567, 697
PsyI GACNNNGTC 1 cut(s) 1085
SacI GAGCTC 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 1396
SatI GCNGC 2 cut(s) 1012, 1290
Sau3AI GATC 7 cut(s) 282, 330, 567, 630, 697, 825, 1231
Sau96I GGNCC 2 cut(s) 178, 858
ScrFI CCNGG 2 cut(s) 771, 1220
SduI GDGCHC 2 cut(s) 109, 378
SexAI ACCWGGT 1 cut(s) 769
SfaNI GCATC 5 cut(s) 107, 426, 451, 477, 645
SfcI CTRYAG 3 cut(s) 753, 989, 1012
Sfr274I CTCGAG 1 cut(s) 21
SfuI TTCGAA 1 cut(s) 316
SinI GGWCC 1 cut(s) 858
SlaI CTCGAG 1 cut(s) 21
SmlI CTYRAG 4 cut(s) 21, 482, 704, 923
SmoI CTYRAG 4 cut(s) 21, 482, 704, 923
SpeI ACTAGT 2 cut(s) 1175, 1420
SsiI CCGC 1 cut(s) 1398
SspMI CTAG 3 cut(s) 149, 1176, 1421
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 769, 1218
StyI CCWWGG 2 cut(s) 495, 1026
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 2 cut(s) 247, 810
TaqI TCGA 4 cut(s) 22, 316, 639, 1302
TfiI GAWTC 3 cut(s) 173, 656, 908
TscAI CASTG 3 cut(s) 109, 348, 943
TseFI GTSAC 1 cut(s) 1076
TseI GCWGC 2 cut(s) 1011, 1289
Tsp45I GTSAC 1 cut(s) 1076
TspDTI ATGAA 5 cut(s) 223, 266, 413, 1170, 1290
TspRI CASTG 3 cut(s) 109, 348, 943
Tth111I GACNNNGTC 1 cut(s) 1085
Vha464I CTTAAG 2 cut(s) 482, 704
VpaK11BI GGWCC 1 cut(s) 858
XapI RAATTY 2 cut(s) 5, 1315
XceI RCATGY 1 cut(s) 72
XhoI CTCGAG 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 1177
XspI CTAG 3 cut(s) 149, 1176, 1421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.