Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008145

Physical Location & Seq

Genomic Coordinates Reverse (-)

6916653 .. 6919888

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG086100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1698 bp

ATGGAACTCTTTGCAAGTTCTCGAGCTTCTCGAGAGAGAGTGAGAGATAGATTTACTAATCTTCCAGAGGATGTTGCTTGTAAAATTCTTTCCTTCGTCAGTTTTAGAGACACTGCTTGTGTGGGATGTGTGTCCAAAAGATGTAGAGAGTTTTCTCTATGCGTTCAGAACTTGGATTTTGATTCGGCCTATGCAATTTACATGCGGGATAGGTTGAGGTTGTTGAATTGTTTGGATAGGTTCTTGTTTCAACGCGGGGAGAAGGAGATAAAGAGCTTTCATATTCATTGGATCTTTGAAGGAGAAAGTGCAAGAAACGATGAGCATTTTCGAGTAATGTCATGGATCAATTATGCAGTCAAGTGCAATGTTGGAAGTCTTAATCTTGAGTTCAATATGTTTGGGGGGATGATGACATTAGAATTGCCGTCTTGCATCTTTCATTGCAAGTCTTTGAGGCATCTAATTGTGGATGTATTGAACACAGGAGGGAAGATTCTTAAGACGCCCTCCTTTGCTTGTTCCAGTAATCTCCAATCCTTAAAACTGAAAAATGTTACTATTGAGGAGGGGTTTGGTAAATGGATCTCATGGTGTTGCAAATGCATAAAGGAATTATCACTTGAACAGGTATTCAAGACAGAAAGAATCAGCATTGAAAGCTCATCTCTGGAATCATTTAGTCTTAAGAGTGATTATCGTTTGTGTTCTGATGATCTCCTTAAGCTCTCCATCCTTAACGTCTCAGGTGAAAAACTGGGAAAAATACATGTACAATGGAAAACACGTAGACATGGCATAGATTATTTGCAGATTTTTGCCCCTAATGTTAAAGATTTGACATTGATCGGGATTTTCATGAATTACCTGTCTTTGGGAAAATTAATGTGTTTAGAAAAGTCGATAATTTATCCATTAGGCATACATCATTTTGACAAGGCGTTTGAGATTCTTTGCAGTGTAAGCAGAGCTAAAGTTCTCGCTTTGATCGGAGACATCATAAAGGTTGTGTTCAGGGAAGGCATCATGAGACCACCCTTAGATAATGTTTATTGCTTTTCTATACTGGGGACGTTGACTGACGACCTTGTCCCACCTATGGCCAATCTTCTTAAAACAGTGCCTAATTTGATTAGTTTGCGCATAAGTAATGCAGTCATCCCTCTCAACTCTAGTACTAATTCATCTGGGTTCAATATCAGTTATTGGAGATCCCTGAACCTGGCTTTTGTTGATCATCTTGAGTACGTATCAATACCAATTTTCAACGGAGATAATGAGGTGGAGTTTGCAGCTTATTTGCTTGAAAATGCTAGGAATTTGAAGAGAATGGTCATTTATCACTCAGGCCAACATGGTGCTATAAAGTGGCTTCAAAATAAAAGCTTCTGCTATTCCACTGCCAATGTTATCTTTATGGAACCAGTCAAGCAGTTAATCAAGAAAACAAAGGAAACAGAAAGGAGGTATAATATTTTTTTACTTTCAGAAATTTTATATCACATTTCATCATATCAAAACCTTAATTTGATGTTGATGGATGCAGTACGTATGGCCATTCTATTGAAATGGAAAACTCGGATGTTGATATGTTTTGGTCAGACTCTTGATATATCTTTAGTTTTAGACAACATTAGTTGTGCAGGGCATATTGTTGTGTTTATGATTATACCCTTTCAGATTTTTGAATTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

565

Amino Acids

64.91

Weight (kDa)

8.76

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	114 - 230	5.4e-08	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	412 - 446	2.3e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300
rosa_chinensis	RchiOBHm_Chr3g0458171
rosa_multiflora	Rmu_co8222700.1_g000001 Rmu_sc0012767.1_g000003 Rmu_sc0012767.1_g000004 Rmu_sc0031170.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421240
rosa_rugosa	Rorug03G0025300
rosa_samantha	Rh3AG086100 Rh3BG088800 Rh3CG089400 Rh3DG089800
rosa_wichuraiana	Rw3G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1088
Acc16I	TGCGCA	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	790
AccII	CGCG	1 cut(s)	255
AciI	CCGC	2 cut(s)	205, 255
AclWI	GGATC	4 cut(s)	299, 353, 593, 1206
AcoI	YGGCCR	2 cut(s)	1101, 1554
AcsI	RAATTY	3 cut(s)	84, 1318, 1491
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	4 cut(s)	774, 1177, 1247, 1548
AfiI	CCNNNNNNNGG	3 cut(s)	874, 1099, 1222
AflII	CTTAAG	3 cut(s)	500, 686, 722
AflIII	ACRYGT	2 cut(s)	769, 785
AjnI	CCWGG	1 cut(s)	1221
AluBI	AGCT	7 cut(s)	26, 276, 663, 727, 971, 1295, 1386
AluI	AGCT	7 cut(s)	26, 276, 663, 727, 971, 1295, 1386
Alw26I	GTCTC	4 cut(s)	102, 748, 987, 1024
AlwI	GGATC	4 cut(s)	299, 353, 593, 1206
Ama87I	CYCGRG	2 cut(s)	21, 30
AoxI	GGCC	4 cut(s)	186, 1101, 1348, 1554
ApeKI	GCWGC	1 cut(s)	1292
ApoI	RAATTY	3 cut(s)	84, 1318, 1491
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
AseI	ATTAAT	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	1143
AsuHPI	GGTGA	1 cut(s)	761
AvaI	CYCGRG	2 cut(s)	21, 30
BalI	TGGCCA	2 cut(s)	1103, 1556
BbvI	GCAGC	1 cut(s)	1304
BccI	CCATC	2 cut(s)	740, 1531
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	1223
BclI	TGATCA	1 cut(s)	1234
BcoDI	GTCTC	4 cut(s)	102, 748, 987, 1024
BfaI	CTAG	2 cut(s)	1173, 1314
BfrI	CTTAAG	3 cut(s)	500, 686, 722
BisI	GCNGC	1 cut(s)	1293
BlsI	GCNGC	1 cut(s)	1294
BmcAI	AGTACT	1 cut(s)	1177
Bme1390I	CCNGG	1 cut(s)	1223
BmeT110I	CYCGRG	2 cut(s)	21, 30
BmiI	GGNNCC	1 cut(s)	1422
BmrFI	CCNGG	1 cut(s)	1223
BmrI	ACTGGG	2 cut(s)	767, 1076
BmsI	GCATC	4 cut(s)	444, 469, 1032, 1531
BmuI	ACTGGG	2 cut(s)	767, 1076
BpuEI	CTTGAG	2 cut(s)	407, 1262
BsaAI	YACGTR	3 cut(s)	788, 1249, 1550
BsaHI	GRCGYC	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	1024
Bsc4I	CCNNNNNNNGG	3 cut(s)	874, 1099, 1222
Bse1I	ACTGG	4 cut(s)	525, 762, 1071, 1424
Bse3DI	GCAATG	2 cut(s)	373, 442
BseBI	CCWGG	1 cut(s)	1223
BseGI	GGATG	8 cut(s)	76, 131, 414, 478, 732, 1158, 1546, 1587
BseLI	CCNNNNNNNGG	3 cut(s)	874, 1099, 1222
BseMI	GCAATG	2 cut(s)	373, 442
BseMII	CTCAG	2 cut(s)	759, 1359
BseNI	ACTGG	4 cut(s)	525, 762, 1071, 1424
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	1 cut(s)	1304
BsgI	GTGCAG	1 cut(s)	1662
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	4 cut(s)	188, 1103, 1350, 1556
BsiHKCI	CYCGRG	2 cut(s)	21, 30
BslFI	GGGAC	2 cut(s)	1076, 1084
BslI	CCNNNNNNNGG	3 cut(s)	874, 1099, 1222
BsmAI	GTCTC	4 cut(s)	102, 748, 987, 1024
BsmBI	CGTCTC	1 cut(s)	748
BsmFI	GGGAC	2 cut(s)	1076, 1084
BsnI	GGCC	4 cut(s)	188, 1103, 1350, 1556
Bso31I	GGTCTC	1 cut(s)	1024
BsoBI	CYCGRG	2 cut(s)	21, 30
Bsp1407I	TGTACA	1 cut(s)	772
Bsp143I	GATC	8 cut(s)	291, 345, 585, 715, 846, 987, 1211, 1234
BspACI	CCGC	2 cut(s)	205, 255
BspANI	GGCC	4 cut(s)	188, 1103, 1350, 1556
BspCNI	CTCAG	2 cut(s)	758, 1358
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	2 cut(s)	858, 1026
BspLI	GGNNCC	1 cut(s)	1422
BspPI	GGATC	4 cut(s)	299, 353, 593, 1206
BspTI	CTTAAG	3 cut(s)	500, 686, 722
BspTNI	GGTCTC	1 cut(s)	1024
BsrDI	GCAATG	2 cut(s)	373, 442
BsrGI	TGTACA	1 cut(s)	772
BsrI	ACTGG	4 cut(s)	525, 762, 1071, 1424
BssMI	GATC	8 cut(s)	291, 345, 585, 715, 846, 987, 1211, 1234
BssNI	GRCGYC	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	1223
Bst4CI	ACNGT	1 cut(s)	1120
Bst6I	CTCTTC	1 cut(s)	1319
BstACI	GRCGYC	1 cut(s)	506
BstAFI	CTTAAG	3 cut(s)	500, 686, 722
BstAUI	TGTACA	1 cut(s)	772
BstBAI	YACGTR	3 cut(s)	788, 1249, 1550
BstDEI	CTNAG	3 cut(s)	745, 1039, 1345
BstF5I	GGATG	8 cut(s)	76, 131, 414, 478, 732, 1158, 1546, 1587
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	1143
BstKTI	GATC	8 cut(s)	294, 348, 588, 718, 849, 990, 1214, 1237
BstMAI	GTCTC	4 cut(s)	102, 748, 987, 1024
BstMBI	GATC	8 cut(s)	291, 345, 585, 715, 846, 987, 1211, 1234
BstMWI	GCNNNNNNNGC	2 cut(s)	660, 963
BstNI	CCWGG	1 cut(s)	1223
BstNSI	RCATGY	2 cut(s)	205, 773
BstSCI	CCNGG	1 cut(s)	1221
BstSNI	TACGTA	2 cut(s)	1249, 1550
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	1304
BstX2I	RGATCY	3 cut(s)	291, 585, 1211
BstYI	RGATCY	3 cut(s)	291, 585, 1211
BsuRI	GGCC	4 cut(s)	188, 1103, 1350, 1556
BtsCI	GGATG	8 cut(s)	76, 131, 414, 478, 732, 1158, 1546, 1587
BtsI	GCAGTG	3 cut(s)	111, 964, 1398
BtsIMutI	CAGTG	4 cut(s)	111, 964, 1125, 1398
CciI	TCATGA	2 cut(s)	858, 1026
CfoI	GCGC	1 cut(s)	1143
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	4 cut(s)	773, 1176, 1246, 1547
CviAII	CATG	8 cut(s)	202, 342, 591, 770, 794, 859, 1027, 1355
CviQI	GTAC	4 cut(s)	773, 1176, 1246, 1547
DdeI	CTNAG	3 cut(s)	745, 1039, 1345
DpnI	GATC	8 cut(s)	293, 347, 587, 717, 848, 989, 1213, 1236
DpnII	GATC	8 cut(s)	291, 345, 585, 715, 846, 987, 1211, 1234
DrdI	GACNNNNNNGTC	1 cut(s)	1088
DseDI	GACNNNNNNGTC	1 cut(s)	1088
EaeI	YGGCCR	2 cut(s)	1101, 1554
Eam1104I	CTCTTC	1 cut(s)	1319
EarI	CTCTTC	1 cut(s)	1319
Eco105I	TACGTA	2 cut(s)	1249, 1550
Eco31I	GGTCTC	1 cut(s)	1024
Eco88I	CYCGRG	2 cut(s)	21, 30
EcoRII	CCWGG	1 cut(s)	1221
EcoT22I	ATGCAT	1 cut(s)	608
Esp3I	CGTCTC	1 cut(s)	748
FaeI	CATG	8 cut(s)	205, 345, 594, 773, 797, 862, 1030, 1358
FaqI	GGGAC	2 cut(s)	1076, 1084
FatI	CATG	8 cut(s)	201, 341, 590, 769, 793, 858, 1026, 1354
FauI	CCCGC	2 cut(s)	198, 248
FbaI	TGATCA	1 cut(s)	1234
FblI	GTMKAC	1 cut(s)	790
Fnu4HI	GCNGC	1 cut(s)	1293
FokI	GGATG	8 cut(s)	83, 138, 421, 485, 719, 1145, 1553, 1594
Fsp4HI	GCNGC	1 cut(s)	1293
FspBI	CTAG	2 cut(s)	1173, 1314
FspI	TGCGCA	1 cut(s)	1142
GlaI	GCGC	1 cut(s)	1142
GluI	GCNGC	1 cut(s)	1293
HaeIII	GGCC	4 cut(s)	188, 1103, 1350, 1556
HgaI	GACGC	1 cut(s)	514
HhaI	GCGC	1 cut(s)	1143
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	8 cut(s)	205, 345, 594, 773, 797, 862, 1030, 1358
Hin6I	GCGC	1 cut(s)	1141
HinP1I	GCGC	1 cut(s)	1141
HincII	GTYRAC	1 cut(s)	1077
HindII	GTYRAC	1 cut(s)	1077
HindIII	AAGCTT	1 cut(s)	1384
HinfI	GANTC	6 cut(s)	182, 496, 648, 674, 949, 1603
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	2 cut(s)	791, 1077
Hpy188I	TCNGA	7 cut(s)	168, 712, 992, 1489, 1581, 1602, 1680
Hpy8I	GTNNAC	2 cut(s)	791, 1077
HpyAV	CCTTC	4 cut(s)	103, 256, 293, 1013
HpyCH4III	ACNGT	1 cut(s)	1120
HpyCH4IV	ACGT	5 cut(s)	741, 787, 1073, 1248, 1549
HpyF10VI	GCNNNNNNNGC	2 cut(s)	660, 963
HpyF3I	CTNAG	3 cut(s)	745, 1039, 1345
HpySE526I	ACGT	5 cut(s)	741, 787, 1073, 1248, 1549
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	8 cut(s)	205, 345, 594, 773, 797, 862, 1030, 1358
HspAI	GCGC	1 cut(s)	1141
Ksp22I	TGATCA	1 cut(s)	1234
Kzo9I	GATC	8 cut(s)	291, 345, 585, 715, 846, 987, 1211, 1234
Lsp1109I	GCAGC	1 cut(s)	1304
LweI	GCATC	4 cut(s)	444, 469, 1032, 1531
MaeI	CTAG	2 cut(s)	1173, 1314
MaeII	ACGT	5 cut(s)	741, 787, 1073, 1248, 1549
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	8 cut(s)	293, 347, 587, 717, 848, 989, 1213, 1236
MboI	GATC	8 cut(s)	291, 345, 585, 715, 846, 987, 1211, 1234
MboII	GAAGA	4 cut(s)	53, 505, 1100, 1336
MflI	RGATCY	3 cut(s)	291, 585, 1211
MlsI	TGGCCA	2 cut(s)	1103, 1556
MluNI	TGGCCA	2 cut(s)	1103, 1556
MlyI	GAGTC	1 cut(s)	1597
MmeI	TCCRAC	1 cut(s)	352
Mox20I	TGGCCA	2 cut(s)	1103, 1556
Mph1103I	ATGCAT	1 cut(s)	608
MscI	TGGCCA	2 cut(s)	1103, 1556
Msp20I	TGGCCA	2 cut(s)	1103, 1556
MspCI	CTTAAG	3 cut(s)	500, 686, 722
MspR9I	CCNGG	1 cut(s)	1223
MvaI	CCWGG	1 cut(s)	1223
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	660, 963
NdeII	GATC	8 cut(s)	291, 345, 585, 715, 846, 987, 1211, 1234
NlaIII	CATG	8 cut(s)	205, 345, 594, 773, 797, 862, 1030, 1358
NlaIV	GGNNCC	1 cut(s)	1422
NsbI	TGCGCA	1 cut(s)	1142
NsiI	ATGCAT	1 cut(s)	608
NspI	RCATGY	2 cut(s)	205, 773
PaeR7I	CTCGAG	2 cut(s)	21, 30
PagI	TCATGA	2 cut(s)	858, 1026
PciI	ACATGT	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PfeI	GAWTC	5 cut(s)	182, 496, 648, 674, 949
PflFI	GACNNNGTC	1 cut(s)	1088
PkrI	GCNGC	1 cut(s)	1294
PleI	GAGTC	1 cut(s)	1597
PpsI	GAGTC	1 cut(s)	1597
Ppu21I	YACGTR	3 cut(s)	788, 1249, 1550
PscI	ACATGT	1 cut(s)	769
PshBI	ATTAAT	1 cut(s)	884
Psp6I	CCWGG	1 cut(s)	1221
PspGI	CCWGG	1 cut(s)	1221
PspN4I	GGNNCC	1 cut(s)	1422
PsuI	RGATCY	3 cut(s)	291, 585, 1211
PsyI	GACNNNGTC	1 cut(s)	1088
RsaI	GTAC	4 cut(s)	774, 1177, 1247, 1548
RsaNI	GTAC	4 cut(s)	773, 1176, 1246, 1547
SatI	GCNGC	1 cut(s)	1293
Sau3AI	GATC	8 cut(s)	291, 345, 585, 715, 846, 987, 1211, 1234
ScaI	AGTACT	1 cut(s)	1177
SchI	GAGTC	1 cut(s)	1597
ScrFI	CCNGG	1 cut(s)	1223
SfaNI	GCATC	4 cut(s)	444, 469, 1032, 1531
Sfr274I	CTCGAG	2 cut(s)	21, 30
SlaI	CTCGAG	2 cut(s)	21, 30
SmlI	CTYRAG	7 cut(s)	21, 30, 386, 500, 686, 722, 1241
SmoI	CTYRAG	7 cut(s)	21, 30, 386, 500, 686, 722, 1241
SnaBI	TACGTA	2 cut(s)	1249, 1550
SsiI	CCGC	2 cut(s)	205, 255
SspI	AATATT	1 cut(s)	1474
SspMI	CTAG	2 cut(s)	1173, 1314
StyD4I	CCNGG	1 cut(s)	1221
TaaI	ACNGT	1 cut(s)	1120
TaiI	ACGT	5 cut(s)	744, 790, 1076, 1251, 1552
TaqI	TCGA	4 cut(s)	22, 31, 331, 902
TatI	WGTACW	2 cut(s)	772, 1175
TfiI	GAWTC	5 cut(s)	182, 496, 648, 674, 949
TscAI	CASTG	4 cut(s)	118, 964, 1125, 1405
TseI	GCWGC	1 cut(s)	1292
TspDTI	ATGAA	7 cut(s)	269, 275, 431, 847, 875, 1173, 1497
TspGWI	ACGGA	1 cut(s)	1284
TspRI	CASTG	4 cut(s)	118, 964, 1125, 1405
Tth111I	GACNNNGTC	1 cut(s)	1088
Vha464I	CTTAAG	3 cut(s)	500, 686, 722
VspI	ATTAAT	1 cut(s)	884
XapI	RAATTY	3 cut(s)	84, 1318, 1491
XceI	RCATGY	2 cut(s)	205, 773
XhoI	CTCGAG	2 cut(s)	21, 30
XmiI	GTMKAC	1 cut(s)	790
XspI	CTAG	2 cut(s)	1173, 1314
ZrmI	AGTACT	1 cut(s)	1177
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.