Rorug03G0025300

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008145
Physical Location & Seq
Reverse (-)
1978782 .. 1980662
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0025300.1

Sequence Viewer

Length: 1056 bp
ATGGCTGAGGTTGAGGGAATTAAAGTTCCGAGAGTGCAACTGGGAAGTCAGGGATTTGAGGTTTCCAAGCTGGGATTTGGGTGTAGACGGCTTACTGGGACATACAGCGAAGCTCTAATCAGTGAAGAGTTTGCATTATCATTGATCAAGCACGCATTCGATAAAGGAATAACATTCTTTGATACAGCAGATCTCTATGGACCACATGCCAATGAAGTTTTGGTTGGAAAGGCATTGAAGCAGTTGCCTAGAGACCAAGTTCAGTTGGCTACAAAGTTTGGCATTGTAAGAATTGAGCCTGATGAAACTAGGATAGTTAATGGGACTCCTGAGTATGTCCGCTCCTGTTGCGAGGCTAGCCTAAAGCGCCTTGATGTTGACTACATTGATCTTTACTATCAACATCGCGTAGACACATCAGTCCCAATAGAGGACACTATGGGGGAACTAAAGAAGTTGGTGGAAGAAGGGAAGATAAAATACATTGGATTATCTGAAGCTAGTCCAGAAACAATTAGGAGGGCACATGCAGTTCATCCCATTACGGCTATACAAATGGAGTGGTCTCTTTGGACTCACGAAATTGAGCAAGTATTCGTCCCACTTTGCAGGGAACTTGAAATTGGGATAGTGCCATACCACCCCCTTGGTCGTGGATTTTTAGCTATAGATGGTCTACCTGAAGATCGCTTTCTGCGTTCAATTCCTCGTTGTCAAGGAGACAACCTCAAGAAAAATAAGATCCTTCAGGGTAAAATATTGAACTTGGCTGAAAAATATGGATGCACCCCTGCACAACTCGCACTTGCGTGGATCGTTAATCAACCCGATGTCTGCTATGTGCCTGGCACAACCAAGACTAAACATATTGATGCTAATGTTGGTTCCTTCAAAGTGAAGCTATCTAAAGAAGATATAAAAGAGATATCTGAGACAATACCTATCAACGCAGCGGCAGGTTACAGATTACCGGACTATTGCCTGCCCTGCCTTTGGCAGTTTGCAGATACACCACCAAAAGCTAGCAAGCAATGCAACCAGAAGAAGCCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

351

Amino Acids

39.34

Weight (kDa)

6.72

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 311 1.4e-72 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 947
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 3 cut(s) 85, 411, 676
AccII CGCG 1 cut(s) 408
AciI CCGC 2 cut(s) 340, 953
AclWI GGATC 2 cut(s) 736, 821
AcuI CTGAAG 3 cut(s) 516, 702, 731
AfiI CCNNNNNNNGG 2 cut(s) 430, 993
AgsI TTSAA 5 cut(s) 238, 620, 702, 763, 892
AjnI CCWGG 1 cut(s) 844
AjuI GAANNNNNNNTTGG 4 cut(s) 207, 239, 606, 638
AleI CACNNNNGTG 1 cut(s) 808
AloI GAACNNNNNNTCC 2 cut(s) 9, 41
AluBI AGCT 6 cut(s) 70, 113, 500, 665, 901, 1022
AluI AGCT 6 cut(s) 70, 113, 500, 665, 901, 1022
Alw26I GTCTC 4 cut(s) 246, 570, 714, 926
AlwI GGATC 2 cut(s) 736, 821
ApeKI GCWGC 1 cut(s) 950
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 200
AsuNHI GCTAGC 2 cut(s) 356, 1022
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 526
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 962
BccI CCATC 1 cut(s) 665
BceAI ACGGC 2 cut(s) 104, 561
BciT130I CCWGG 1 cut(s) 846
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 4 cut(s) 246, 570, 714, 926
BfaI CTAG 5 cut(s) 249, 309, 357, 501, 1023
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 1 cut(s) 370
BfuAI ACCTGC 1 cut(s) 947
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 951, 954
BlsI GCNGC 2 cut(s) 952, 955
Bme1390I CCNGG 1 cut(s) 846
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 886
BmrFI CCNGG 1 cut(s) 846
BmrI ACTGGG 2 cut(s) 50, 105
BmsI GCATC 2 cut(s) 773, 862
BmtI GCTAGC 2 cut(s) 360, 1026
BmuI ACTGGG 2 cut(s) 50, 105
BplI GAGNNNNNCTC 2 cut(s) 711, 743
Bpu10I CCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 713
BsaI GGTCTC 2 cut(s) 246, 570
BsaJI CCNNGG 1 cut(s) 646
BsaWI WCCGGW 1 cut(s) 970
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 993
Bse1I ACTGG 2 cut(s) 45, 100
Bse3DI GCAATG 1 cut(s) 1037
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 1 cut(s) 646
BseGI GGATG 2 cut(s) 535, 788
BseLI CCNNNNNNNGG 2 cut(s) 430, 993
BseMI GCAATG 1 cut(s) 1037
BseMII CTCAG 2 cut(s) 321, 921
BseNI ACTGG 2 cut(s) 45, 100
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 1 cut(s) 962
BseYI CCCAGC 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 777
Bsh1236I CGCG 1 cut(s) 408
BsiSI CCGG 1 cut(s) 971
BslFI GGGAC 4 cut(s) 112, 337, 407, 584
BslI CCNNNNNNNGG 2 cut(s) 430, 993
BsmAI GTCTC 4 cut(s) 246, 570, 714, 926
BsmFI GGGAC 4 cut(s) 112, 337, 407, 584
BsmI GAATGC 1 cut(s) 155
Bso31I GGTCTC 2 cut(s) 246, 570
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 6 cut(s) 144, 190, 388, 685, 741, 813
BspACI CCGC 2 cut(s) 340, 953
BspCNI CTCAG 2 cut(s) 322, 922
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 886
BspMI ACCTGC 1 cut(s) 947
BspOI GCTAGC 2 cut(s) 360, 1026
BspPI GGATC 2 cut(s) 736, 821
BspTNI GGTCTC 2 cut(s) 246, 570
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 1037
BsrI ACTGG 2 cut(s) 45, 100
BssECI CCNNGG 1 cut(s) 646
BssMI GATC 6 cut(s) 144, 190, 388, 685, 741, 813
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 846
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 1032
BstC8I GCNNGC 5 cut(s) 153, 358, 983, 1024, 1028
BstDEI CTNAG 3 cut(s) 6, 330, 930
BstF5I GGATG 2 cut(s) 535, 788
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 6 cut(s) 147, 193, 391, 688, 744, 816
BstMAI GTCTC 4 cut(s) 246, 570, 714, 926
BstMBI GATC 6 cut(s) 144, 190, 388, 685, 741, 813
BstMWI GCNNNNNNNGC 6 cut(s) 348, 357, 366, 800, 987, 1032
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 2 cut(s) 209, 530
BstSCI CCNGG 1 cut(s) 844
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 962
BstX2I RGATCY 2 cut(s) 190, 741
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 2 cut(s) 190, 741
BtgZI GCGATG 1 cut(s) 389
BtsCI GGATG 2 cut(s) 535, 788
BtsIMutI CAGTG 1 cut(s) 127
BveI ACCTGC 1 cut(s) 947
Cac8I GCNNGC 5 cut(s) 153, 358, 983, 1024, 1028
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 542, 577
CviAII CATG 2 cut(s) 206, 527
DdeI CTNAG 3 cut(s) 6, 330, 930
DpnI GATC 6 cut(s) 146, 192, 390, 687, 743, 815
DpnII GATC 6 cut(s) 144, 190, 388, 685, 741, 813
DrdI GACNNNNNNGTC 1 cut(s) 419
DseDI GACNNNNNNGTC 1 cut(s) 419
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 646
Eco31I GGTCTC 2 cut(s) 246, 570
Eco32I GATATC 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 3 cut(s) 516, 702, 731
EcoRII CCWGG 1 cut(s) 844
EcoRV GATATC 1 cut(s) 927
EcoT14I CCWWGG 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 2 cut(s) 209, 530
FaqI GGGAC 4 cut(s) 112, 337, 407, 584
FatI CATG 2 cut(s) 205, 526
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 3 cut(s) 85, 411, 676
Fnu4HI GCNGC 2 cut(s) 951, 954
FokI GGATG 2 cut(s) 522, 795
Fsp4HI GCNGC 2 cut(s) 951, 954
FspBI CTAG 5 cut(s) 249, 309, 357, 501, 1023
GlaI GCGC 1 cut(s) 368
GluI GCNGC 2 cut(s) 951, 954
GsaI CCCAGC 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 370
HapII CCGG 1 cut(s) 971
HhaI GCGC 1 cut(s) 369
Hin1II CATG 2 cut(s) 209, 530
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 2 cut(s) 325, 574
HpaII CCGG 1 cut(s) 971
Hpy166II GTNNAC 4 cut(s) 86, 379, 412, 677
Hpy188I TCNGA 3 cut(s) 30, 496, 931
Hpy188III TCNNGA 4 cut(s) 329, 506, 578, 730
Hpy8I GTNNAC 4 cut(s) 86, 379, 412, 677
HpyAV CCTTC 3 cut(s) 461, 755, 898
HpyCH4V TGCA 8 cut(s) 37, 134, 530, 609, 786, 794, 1004, 1035
HpyF10VI GCNNNNNNNGC 6 cut(s) 348, 357, 366, 800, 987, 1032
HpyF3I CTNAG 3 cut(s) 6, 330, 930
Hsp92II CATG 2 cut(s) 209, 530
HspAI GCGC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 6 cut(s) 144, 190, 388, 685, 741, 813
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 1 cut(s) 962
LweI GCATC 2 cut(s) 773, 862
MaeI CTAG 5 cut(s) 249, 309, 357, 501, 1023
MaeIII GTNAC 1 cut(s) 959
MalI GATC 6 cut(s) 146, 192, 390, 687, 743, 815
MbiI CCGCTC 1 cut(s) 342
MboI GATC 6 cut(s) 144, 190, 388, 685, 741, 813
MboII GAAGA 6 cut(s) 137, 476, 484, 695, 923, 1054
MflI RGATCY 2 cut(s) 190, 741
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 6 cut(s) 18, 291, 513, 582, 621, 702
MlyI GAGTC 2 cut(s) 319, 568
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 7 cut(s) 7, 52, 346, 424, 513, 717, 737
MseI TTAA 3 cut(s) 21, 318, 819
MslI CAYNNNNRTG 3 cut(s) 210, 808, 870
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 1 cut(s) 971
MspR9I CCNGG 1 cut(s) 846
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 6 cut(s) 348, 357, 366, 800, 987, 1032
NdeII GATC 6 cut(s) 144, 190, 388, 685, 741, 813
NheI GCTAGC 2 cut(s) 356, 1022
NlaIII CATG 2 cut(s) 209, 530
NlaIV GGNNCC 1 cut(s) 886
NspI RCATGY 2 cut(s) 209, 530
OliI CACNNNNGTG 1 cut(s) 808
PcsI WCGNNNNNNNCGW 1 cut(s) 694
PctI GAATGC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 952, 955
PleI GAGTC 2 cut(s) 319, 568
PpsI GAGTC 2 cut(s) 319, 568
Psp6I CCWGG 1 cut(s) 844
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 1 cut(s) 886
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 2 cut(s) 190, 741
RseI CAYNNNNRTG 3 cut(s) 210, 808, 870
SaqAI TTAA 3 cut(s) 21, 318, 819
SatI GCNGC 2 cut(s) 951, 954
Sau3AI GATC 6 cut(s) 144, 190, 388, 685, 741, 813
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 2 cut(s) 319, 568
ScrFI CCNGG 1 cut(s) 846
SduI GDGCHC 1 cut(s) 526
SfaNI GCATC 2 cut(s) 773, 862
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 3 cut(s) 210, 808, 870
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 6 cut(s) 18, 291, 513, 582, 621, 702
SsiI CCGC 2 cut(s) 340, 953
SspI AATATT 1 cut(s) 759
SspMI CTAG 5 cut(s) 249, 309, 357, 501, 1023
StyD4I CCNGG 1 cut(s) 844
StyI CCWWGG 1 cut(s) 646
TaqI TCGA 1 cut(s) 159
TasI AATT 6 cut(s) 18, 291, 513, 582, 621, 702
TauI GCSGC 1 cut(s) 956
Tru1I TTAA 3 cut(s) 21, 318, 819
Tru9I TTAA 3 cut(s) 21, 318, 819
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 950
TspDTI ATGAA 3 cut(s) 228, 318, 524
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 2 cut(s) 209, 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmiI GTMKAC 3 cut(s) 85, 411, 676
XspI CTAG 5 cut(s) 249, 309, 357, 501, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.