Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008145

Physical Location & Seq

Genomic Coordinates Forward (+)

42474519 .. 42477664

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGAACTCTTTGCAAGTTCTCGAGCTTCTCGAGAGAGAGTGAGAGATAGATTTACTAATCTTCCAGAGGATGTTGCTTGTAAAATTCTTTCCTTCGTCAGTTTTAGAGACAGTGCTCGTGTGGGATGTGTGTCCAAAAGATATAGAGAGTTTTCTCTATGCGTTCAGAACTTGGATTTTGATTCGGCCTATGCAATTGACATGCGGGATAGGTTGAGGTTGTTGAATTGTTTGGATAGGTTCTTGTTTCAACGCGGGGAGAAGGAGATAAAGAGCTTTCGTATTCATTGGATATTTGAAGGAGAAAGTGCAAGAAACGATGAGCATTTTCGAGTAATGTCATGGATCAATTATGCAGTCAAGTGCAATGTTGGAAGTCTTAATCTTGAGCTCGGTATGTTTGGGGGGATGATGACATTAGAATTGCCGTCTTGCATCTTTCATTGCAAGCCTTTGAGGCATCTAATTGTGGATGTGTTGAACACAGGAGGGAAGATTCTTAAGACGCCCTCCTTTGCTTGTTCCAGTAATCTCCAATCCTTAAAACTGAAAAATGTTACTATTGAGGAGGGGTTTGGTAAATGGATCTCATGGTGTTGCAAATGCATAAAGGAATTATCACTTGAACAGGTATTCAAGACAGAAAGAATCAGCATTGAAAGCTCATCTCTGGAATCATTTAGTCTTAAGAGTGATTATCGTTTGTGTTCTGATGATCTCCTTAAGCTCTCCATCCTTAACGTCTCAGGTGAAAAATTGGGAAAAATACATGTACAATGGAAAACACATAGACGTGGCATAGATTTTTTGCAGATTTTTGCCCCTAATGTTAAAGATTTGACATTGATCGGGATTTTCATGAATTACCTGTCTTTGGGGAAATTAATGTGTTTAGAAAAGTCAATAATTTATCCATTAGGCATACATCATTTTGACAAGGCGTTTGAGATTCTTTGCAGTGTAAGCAGAGCTAAAGTTCTCGCTTTGATCGGCGACATCATAAAGGTTGTGTTCAGGGAAGGCATCATGACACCACCCTTAGATAATGTTTATTGCTTTTCTATGCTTGGGACGTTGACTGACGACCTTGTCCCACCTATGGCCAATCTTCTTAAAACAGTGCCTAATTTGATTAGTTTGCGAATAAGTAATGCAGTCATCCCTCTCAACTCTAGTACTAATTCATCTGGGTTCAATATCAGCTATTGGAAATCCCTGGACCTGCCTTTTGTTGATCATCTTGAGTACGTATCAATACCAATTTTCAATGGGGATAATGAGGTGGAGTTTGCAGCTTATTTGCTCGAAAATGCTAGGAATTTGAAGAGAATGGTCATTTATCACTCAGGCCAACATAGTGCTATAAAGTGGCTTCAAAATAAAAGCTTCTGCTATTCCACTGCCAATGTTATCTTTATGGAACCAGTCAAGCAGTTGATCAAGAAAACAAAGGAAACAGAAAGGAGGCTGATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

492

Amino Acids

56.4

Weight (kDa)

8.87

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	115 - 230	7.7e-07	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	412 - 446	1.9e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300
rosa_chinensis	RchiOBHm_Chr3g0458171
rosa_multiflora	Rmu_co8222700.1_g000001 Rmu_sc0012767.1_g000003 Rmu_sc0012767.1_g000004 Rmu_sc0031170.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421240
rosa_rugosa	Rorug03G0025300
rosa_samantha	Rh3AG086100 Rh3BG088800 Rh3CG089400 Rh3DG089800
rosa_wichuraiana	Rw3G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1088
Acc36I	ACCTGC	1 cut(s)	1230
AccII	CGCG	1 cut(s)	255
AciI	CCGC	2 cut(s)	205, 255
AclWI	GGATC	2 cut(s)	353, 593
AcoI	YGGCCR	1 cut(s)	1101
AcsI	RAATTY	2 cut(s)	84, 1318
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	3 cut(s)	774, 1177, 1247
AfiI	CCNNNNNNNGG	2 cut(s)	874, 1099
AflII	CTTAAG	3 cut(s)	500, 686, 722
AflIII	ACRYGT	1 cut(s)	769
AjiI	CACGTC	1 cut(s)	794
AjnI	CCWGG	1 cut(s)	1215
AluBI	AGCT	9 cut(s)	26, 276, 391, 663, 727, 971, 1203, 1295, 1386
AluI	AGCT	9 cut(s)	26, 276, 391, 663, 727, 971, 1203, 1295, 1386
Alw21I	GWGCWC	2 cut(s)	118, 393
Alw26I	GTCTC	2 cut(s)	102, 748
AlwI	GGATC	2 cut(s)	353, 593
Ama87I	CYCGRG	2 cut(s)	21, 30
AoxI	GGCC	3 cut(s)	186, 1101, 1348
ApeKI	GCWGC	1 cut(s)	1292
ApoI	RAATTY	2 cut(s)	84, 1318
ArsI	GACNNNNNNTTYG	4 cut(s)	926, 958, 1211, 1243
AseI	ATTAAT	1 cut(s)	884
AspS9I	GGNCC	1 cut(s)	1219
AsuHPI	GGTGA	1 cut(s)	761
AvaI	CYCGRG	2 cut(s)	21, 30
AvaII	GGWCC	1 cut(s)	1219
BalI	TGGCCA	1 cut(s)	1103
BanII	GRGCYC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	117
Bbv12I	GWGCWC	2 cut(s)	118, 393
BbvI	GCAGC	1 cut(s)	1304
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	1217
BclI	TGATCA	2 cut(s)	1234, 1437
BcoDI	GTCTC	2 cut(s)	102, 748
BfaI	CTAG	3 cut(s)	1173, 1314, 1477
BfrI	CTTAAG	3 cut(s)	500, 686, 722
BfuAI	ACCTGC	1 cut(s)	1230
BglI	GCCNNNNNGGC	1 cut(s)	457
BisI	GCNGC	1 cut(s)	1293
BlsI	GCNGC	1 cut(s)	1294
BmcAI	AGTACT	1 cut(s)	1177
Bme1390I	CCNGG	1 cut(s)	1217
Bme18I	GGWCC	1 cut(s)	1219
BmeT110I	CYCGRG	2 cut(s)	21, 30
BmgBI	CACGTC	1 cut(s)	794
BmgT120I	GGNCC	1 cut(s)	1219
BmiI	GGNNCC	1 cut(s)	1422
BmrFI	CCNGG	1 cut(s)	1217
BmsI	GCATC	3 cut(s)	444, 469, 1032
BpuEI	CTTGAG	2 cut(s)	407, 1262
BsaAI	YACGTR	1 cut(s)	1249
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	1215
Bsc4I	CCNNNNNNNGG	2 cut(s)	874, 1099
Bse1I	ACTGG	2 cut(s)	525, 1424
Bse3DI	GCAATG	2 cut(s)	373, 442
BseBI	CCWGG	1 cut(s)	1217
BseDI	CCNNGG	1 cut(s)	1215
BseGI	GGATG	6 cut(s)	76, 131, 414, 478, 732, 1158
BseLI	CCNNNNNNNGG	2 cut(s)	874, 1099
BseMI	GCAATG	2 cut(s)	373, 442
BseMII	CTCAG	2 cut(s)	759, 1359
BseNI	ACTGG	2 cut(s)	525, 1424
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	1 cut(s)	1304
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	188, 1103, 1350
BsiHKAI	GWGCWC	2 cut(s)	118, 393
BsiHKCI	CYCGRG	2 cut(s)	21, 30
BslFI	GGGAC	2 cut(s)	1076, 1084
BslI	CCNNNNNNNGG	2 cut(s)	874, 1099
BsmAI	GTCTC	2 cut(s)	102, 748
BsmBI	CGTCTC	1 cut(s)	748
BsmFI	GGGAC	2 cut(s)	1076, 1084
BsnI	GGCC	3 cut(s)	188, 1103, 1350
BsoBI	CYCGRG	2 cut(s)	21, 30
Bsp1286I	GDGCHC	2 cut(s)	118, 393
Bsp1407I	TGTACA	1 cut(s)	772
Bsp143I	GATC	7 cut(s)	345, 585, 715, 846, 987, 1234, 1437
BspACI	CCGC	2 cut(s)	205, 255
BspANI	GGCC	3 cut(s)	188, 1103, 1350
BspCNI	CTCAG	2 cut(s)	758, 1358
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	2 cut(s)	858, 1026
BspLI	GGNNCC	1 cut(s)	1422
BspMI	ACCTGC	1 cut(s)	1230
BspPI	GGATC	2 cut(s)	353, 593
BspTI	CTTAAG	3 cut(s)	500, 686, 722
BsrDI	GCAATG	2 cut(s)	373, 442
BsrGI	TGTACA	1 cut(s)	772
BsrI	ACTGG	2 cut(s)	525, 1424
BssECI	CCNNGG	1 cut(s)	1215
BssMI	GATC	7 cut(s)	345, 585, 715, 846, 987, 1234, 1437
BssNI	GRCGYC	1 cut(s)	506
BssSI	CACGAG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	1217
Bst4CI	ACNGT	2 cut(s)	113, 1120
Bst6I	CTCTTC	1 cut(s)	1319
BstACI	GRCGYC	1 cut(s)	506
BstAFI	CTTAAG	3 cut(s)	500, 686, 722
BstAUI	TGTACA	1 cut(s)	772
BstBAI	YACGTR	1 cut(s)	1249
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	3 cut(s)	745, 1039, 1345
BstF5I	GGATG	6 cut(s)	76, 131, 414, 478, 732, 1158
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	7 cut(s)	348, 588, 718, 849, 990, 1237, 1440
BstMAI	GTCTC	2 cut(s)	102, 748
BstMBI	GATC	7 cut(s)	345, 585, 715, 846, 987, 1234, 1437
BstMWI	GCNNNNNNNGC	3 cut(s)	457, 660, 963
BstNI	CCWGG	1 cut(s)	1217
BstNSI	RCATGY	2 cut(s)	205, 773
BstSCI	CCNGG	1 cut(s)	1215
BstSNI	TACGTA	1 cut(s)	1249
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	1304
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	3 cut(s)	188, 1103, 1350
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	6 cut(s)	76, 131, 414, 478, 732, 1158
BtsI	GCAGTG	2 cut(s)	964, 1398
BtsIMutI	CAGTG	4 cut(s)	118, 964, 1125, 1398
BveI	ACCTGC	1 cut(s)	1230
Cac8I	GCNNGC	1 cut(s)	449
CciI	TCATGA	2 cut(s)	858, 1026
Cfr13I	GGNCC	1 cut(s)	1219
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	3 cut(s)	773, 1176, 1246
CviAII	CATG	6 cut(s)	202, 342, 591, 770, 859, 1027
CviQI	GTAC	3 cut(s)	773, 1176, 1246
DdeI	CTNAG	3 cut(s)	745, 1039, 1345
DpnI	GATC	7 cut(s)	347, 587, 717, 848, 989, 1236, 1439
DpnII	GATC	7 cut(s)	345, 585, 715, 846, 987, 1234, 1437
DrdI	GACNNNNNNGTC	1 cut(s)	1088
DseDI	GACNNNNNNGTC	1 cut(s)	1088
EaeI	YGGCCR	1 cut(s)	1101
Eam1104I	CTCTTC	1 cut(s)	1319
EarI	CTCTTC	1 cut(s)	1319
Ecl136II	GAGCTC	1 cut(s)	391
Eco105I	TACGTA	1 cut(s)	1249
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	1219
Eco53kI	GAGCTC	1 cut(s)	391
Eco88I	CYCGRG	2 cut(s)	21, 30
EcoICRI	GAGCTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	1215
EcoT22I	ATGCAT	1 cut(s)	608
EcoT38I	GRGCYC	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	748
FaeI	CATG	6 cut(s)	205, 345, 594, 773, 862, 1030
FaqI	GGGAC	2 cut(s)	1076, 1084
FatI	CATG	6 cut(s)	201, 341, 590, 769, 858, 1026
FauI	CCCGC	2 cut(s)	198, 248
FbaI	TGATCA	2 cut(s)	1234, 1437
Fnu4HI	GCNGC	1 cut(s)	1293
FokI	GGATG	6 cut(s)	83, 138, 421, 485, 719, 1145
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	1293
FspBI	CTAG	3 cut(s)	1173, 1314, 1477
GluI	GCNGC	1 cut(s)	1293
HaeIII	GGCC	3 cut(s)	188, 1103, 1350
HgaI	GACGC	1 cut(s)	514
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	6 cut(s)	205, 345, 594, 773, 862, 1030
HincII	GTYRAC	1 cut(s)	1077
HindII	GTYRAC	1 cut(s)	1077
HindIII	AAGCTT	1 cut(s)	1384
HinfI	GANTC	5 cut(s)	182, 496, 648, 674, 949
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	1 cut(s)	1077
Hpy188I	TCNGA	2 cut(s)	168, 712
Hpy8I	GTNNAC	1 cut(s)	1077
HpyAV	CCTTC	4 cut(s)	103, 256, 293, 1013
HpyCH4III	ACNGT	2 cut(s)	113, 1120
HpyCH4IV	ACGT	4 cut(s)	741, 793, 1073, 1248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	457, 660, 963
HpyF3I	CTNAG	3 cut(s)	745, 1039, 1345
HpySE526I	ACGT	4 cut(s)	741, 793, 1073, 1248
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	6 cut(s)	205, 345, 594, 773, 862, 1030
Ksp22I	TGATCA	2 cut(s)	1234, 1437
Kzo9I	GATC	7 cut(s)	345, 585, 715, 846, 987, 1234, 1437
Lsp1109I	GCAGC	1 cut(s)	1304
LweI	GCATC	3 cut(s)	444, 469, 1032
MaeI	CTAG	3 cut(s)	1173, 1314, 1477
MaeII	ACGT	4 cut(s)	741, 793, 1073, 1248
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	7 cut(s)	347, 587, 717, 848, 989, 1236, 1439
MboI	GATC	7 cut(s)	345, 585, 715, 846, 987, 1234, 1437
MboII	GAAGA	4 cut(s)	53, 505, 1100, 1336
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	2 cut(s)	118, 393
MlsI	TGGCCA	1 cut(s)	1103
MluNI	TGGCCA	1 cut(s)	1103
MmeI	TCCRAC	1 cut(s)	352
Mox20I	TGGCCA	1 cut(s)	1103
Mph1103I	ATGCAT	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	1103
MseI	TTAA	9 cut(s)	381, 501, 542, 687, 723, 738, 831, 884, 1113
MslI	CAYNNNNRTG	1 cut(s)	792
Msp20I	TGGCCA	1 cut(s)	1103
MspCI	CTTAAG	3 cut(s)	500, 686, 722
MspR9I	CCNGG	1 cut(s)	1217
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	1217
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	457, 660, 963
NdeII	GATC	7 cut(s)	345, 585, 715, 846, 987, 1234, 1437
NlaIII	CATG	6 cut(s)	205, 345, 594, 773, 862, 1030
NlaIV	GGNNCC	1 cut(s)	1422
NsiI	ATGCAT	1 cut(s)	608
NspI	RCATGY	2 cut(s)	205, 773
PaeR7I	CTCGAG	2 cut(s)	21, 30
PagI	TCATGA	2 cut(s)	858, 1026
PciI	ACATGT	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PfeI	GAWTC	5 cut(s)	182, 496, 648, 674, 949
PflFI	GACNNNGTC	1 cut(s)	1088
PkrI	GCNGC	1 cut(s)	1294
Ppu21I	YACGTR	1 cut(s)	1249
PscI	ACATGT	1 cut(s)	769
PshBI	ATTAAT	1 cut(s)	884
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	1215
PspGI	CCWGG	1 cut(s)	1215
PspN4I	GGNNCC	1 cut(s)	1422
PspPI	GGNCC	1 cut(s)	1219
PsuI	RGATCY	1 cut(s)	585
PsyI	GACNNNGTC	1 cut(s)	1088
RsaI	GTAC	3 cut(s)	774, 1177, 1247
RsaNI	GTAC	3 cut(s)	773, 1176, 1246
RseI	CAYNNNNRTG	1 cut(s)	792
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	9 cut(s)	381, 501, 542, 687, 723, 738, 831, 884, 1113
SatI	GCNGC	1 cut(s)	1293
Sau3AI	GATC	7 cut(s)	345, 585, 715, 846, 987, 1234, 1437
Sau96I	GGNCC	1 cut(s)	1219
ScaI	AGTACT	1 cut(s)	1177
ScrFI	CCNGG	1 cut(s)	1217
SduI	GDGCHC	2 cut(s)	118, 393
SfaNI	GCATC	3 cut(s)	444, 469, 1032
Sfr274I	CTCGAG	2 cut(s)	21, 30
SinI	GGWCC	1 cut(s)	1219
SlaI	CTCGAG	2 cut(s)	21, 30
SmiMI	CAYNNNNRTG	1 cut(s)	792
SmlI	CTYRAG	7 cut(s)	21, 30, 386, 500, 686, 722, 1241
SmoI	CTYRAG	7 cut(s)	21, 30, 386, 500, 686, 722, 1241
SnaBI	TACGTA	1 cut(s)	1249
SsiI	CCGC	2 cut(s)	205, 255
SspMI	CTAG	3 cut(s)	1173, 1314, 1477
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	1215
TaaI	ACNGT	2 cut(s)	113, 1120
TaiI	ACGT	4 cut(s)	744, 796, 1076, 1251
TaqI	TCGA	4 cut(s)	22, 31, 331, 1305
TatI	WGTACW	2 cut(s)	772, 1175
TfiI	GAWTC	5 cut(s)	182, 496, 648, 674, 949
Tru1I	TTAA	9 cut(s)	381, 501, 542, 687, 723, 738, 831, 884, 1113
Tru9I	TTAA	9 cut(s)	381, 501, 542, 687, 723, 738, 831, 884, 1113
TscAI	CASTG	4 cut(s)	118, 964, 1125, 1405
TseI	GCWGC	1 cut(s)	1292
TspDTI	ATGAA	5 cut(s)	275, 431, 847, 875, 1173
TspRI	CASTG	4 cut(s)	118, 964, 1125, 1405
Tth111I	GACNNNGTC	1 cut(s)	1088
Vha464I	CTTAAG	3 cut(s)	500, 686, 722
VpaK11BI	GGWCC	1 cut(s)	1219
VspI	ATTAAT	1 cut(s)	884
XapI	RAATTY	2 cut(s)	84, 1318
XceI	RCATGY	2 cut(s)	205, 773
XhoI	CTCGAG	2 cut(s)	21, 30
XspI	CTAG	3 cut(s)	1173, 1314, 1477
ZrmI	AGTACT	1 cut(s)	1177
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.