Rmu_co8222700.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8222700.1
OG0008145
Physical Location & Seq
Reverse (-)
2 .. 411
410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8222700.1_g000001.1.cds

Sequence Viewer

Length: 313 bp
atgagaccacccttagataatgtttattgcttttctatacttgggacgttgactgacgaccttgtcccacctatggccaatcttcttaaaacagtgcctaatttgattagtttgcgcataagtaatgcagtcatccctctcaactctagtactaattcatctgggttcaatatcagttattggaaatccctgaacctggcttttgttgatcatcttgagtacgtatcaataccaattttcaacggagataatgaggtggagtttgcagcttatttgcttgaaaatgctaggaatttgaagagaatggtcattt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

104

Amino Acids

11.65

Weight (kDa)

5.12

Isoelectric Point (pI)

25.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
Acc16I TGCGCA 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 292
AfaI GTAC 2 cut(s) 151, 221
AfiI CCNNNNNNNGG 2 cut(s) 73, 196
AgsI TTSAA 4 cut(s) 169, 241, 281, 298
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 292
AspLEI GCGC 1 cut(s) 117
BalI TGGCCA 1 cut(s) 77
BbvI GCAGC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 197
BclI TGATCA 1 cut(s) 208
BfaI CTAG 2 cut(s) 147, 288
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 236
BsaAI YACGTR 1 cut(s) 223
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 196
BseBI CCWGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 73, 196
BseXI GCAGC 1 cut(s) 278
BshFI GGCC 1 cut(s) 77
BslFI GGGAC 2 cut(s) 50, 58
BslI CCNNNNNNNGG 2 cut(s) 73, 196
BsmFI GGGAC 2 cut(s) 50, 58
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 208
BspANI GGCC 1 cut(s) 77
BssMI GATC 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstSNI TACGTA 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 99
CfoI GCGC 1 cut(s) 117
Csp6I GTAC 2 cut(s) 150, 220
CviJI RGCY 3 cut(s) 77, 200, 269
CviKI_1 RGCY 3 cut(s) 77, 200, 269
CviQI GTAC 2 cut(s) 150, 220
DdeI CTNAG 1 cut(s) 13
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco105I TACGTA 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 195
FaiI YATR 3 cut(s) 38, 74, 119
FaqI GGGAC 2 cut(s) 50, 58
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 147, 288
FspI TGCGCA 1 cut(s) 116
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 77
HhaI GCGC 1 cut(s) 117
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 2 cut(s) 47, 222
HpyCH4V TGCA 2 cut(s) 128, 266
HpyF3I CTNAG 1 cut(s) 13
HpySE526I ACGT 2 cut(s) 47, 222
HspAI GCGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 4 cut(s) 147, 182, 203, 209
Lsp1109I GCAGC 1 cut(s) 278
MaeI CTAG 2 cut(s) 147, 288
MaeII ACGT 2 cut(s) 47, 222
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 2 cut(s) 74, 310
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 4 cut(s) 100, 154, 234, 292
MluNI TGGCCA 1 cut(s) 77
MnlI CCTC 2 cut(s) 147, 247
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
MseI TTAA 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
NdeII GATC 1 cut(s) 208
NsbI TGCGCA 1 cut(s) 116
PflFI GACNNNGTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 268
Ppu21I YACGTR 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 62
RsaI GTAC 2 cut(s) 151, 221
RsaNI GTAC 2 cut(s) 150, 220
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 197
SetI ASST 7 cut(s) 50, 63, 73, 198, 225, 258, 271
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SnaBI TACGTA 1 cut(s) 223
Sse9I AATT 4 cut(s) 100, 154, 234, 292
SspMI CTAG 2 cut(s) 147, 288
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 2 cut(s) 50, 225
TasI AATT 4 cut(s) 100, 154, 234, 292
TatI WGTACW 1 cut(s) 149
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 147
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 1 cut(s) 99
Tth111I GACNNNGTC 1 cut(s) 62
XapI RAATTY 1 cut(s) 292
XspI CTAG 2 cut(s) 147, 288
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.