Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031170.1

Orthogroup ID

OG0008145

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1244

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031170.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 571 bp

tgtaagcagagctaaagttctcgctttgatcggagacatcataaaggttgtgttcagggaaggcttcatgagaccacccttagataatgtttattgcttttctatacttgggacgttgactgacgaccttgtcccacctatggccaatcttcttaaaacagtgcctaatttgattagtttgcgcataagtaatgcagtcatccctctcaactctagtactaattcatctgggttcaatatcagttattggaaatccctgaacctggcttttgttgatcatcttgagtacgtatcaataccaattttcaacggagataatgaggtggagtttgcagcttatttgcttgaaaatgctaggaatttgaagagaatggtcatttaccactcaggccaacatggtgctataaagtggcttcaaaataaaagcttctgctattccactgccaatgttatctttatggaaccagtcaagcagttaatcaagaaaacaaaggaaacagaaaggagtacgtatggccattctattgaaatggaaaactcggatgttgatatgttttggtcagactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

189

Amino Acids

21.4

Weight (kDa)

6.47

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300
rosa_chinensis	RchiOBHm_Chr3g0458171
rosa_multiflora	Rmu_co8222700.1_g000001 Rmu_sc0012767.1_g000003 Rmu_sc0012767.1_g000004 Rmu_sc0031170.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421240
rosa_rugosa	Rorug03G0025300
rosa_samantha	Rh3AG086100 Rh3BG088800 Rh3CG089400 Rh3DG089800
rosa_wichuraiana	Rw3G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	129
Acc16I	TGCGCA	1 cut(s)	183
AcoI	YGGCCR	2 cut(s)	142, 515
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	3 cut(s)	218, 288, 509
AfiI	CCNNNNNNNGG	2 cut(s)	140, 263
AgsI	TTSAA	6 cut(s)	236, 308, 348, 365, 417, 528
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	3 cut(s)	12, 336, 427
AluI	AGCT	3 cut(s)	12, 336, 427
Alw26I	GTCTC	2 cut(s)	28, 65
AoxI	GGCC	3 cut(s)	142, 389, 515
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	184
BalI	TGGCCA	2 cut(s)	144, 517
BbvI	GCAGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	28, 65
BfaI	CTAG	2 cut(s)	214, 355
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	303
BsaAI	YACGTR	2 cut(s)	290, 511
BsaI	GGTCTC	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 263
Bse1I	ACTGG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	199, 548
BseLI	CCNNNNNNNGG	2 cut(s)	140, 263
BseMII	CTCAG	1 cut(s)	400
BseNI	ACTGG	1 cut(s)	465
BseXI	GCAGC	1 cut(s)	345
BshFI	GGCC	3 cut(s)	144, 391, 517
BslFI	GGGAC	2 cut(s)	117, 125
BslI	CCNNNNNNNGG	2 cut(s)	140, 263
BsmAI	GTCTC	2 cut(s)	28, 65
BsmFI	GGGAC	2 cut(s)	117, 125
BsnI	GGCC	3 cut(s)	144, 391, 517
Bso31I	GGTCTC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	28, 275
BspANI	GGCC	3 cut(s)	144, 391, 517
BspCNI	CTCAG	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	463
BspTNI	GGTCTC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	465
BssMI	GATC	2 cut(s)	28, 275
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	360
BstBAI	YACGTR	2 cut(s)	290, 511
BstDEI	CTNAG	2 cut(s)	80, 386
BstF5I	GGATG	2 cut(s)	199, 548
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	2 cut(s)	31, 278
BstMAI	GTCTC	2 cut(s)	28, 65
BstMBI	GATC	2 cut(s)	28, 275
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSNI	TACGTA	2 cut(s)	290, 511
BstV1I	GCAGC	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	144, 391, 517
BtsCI	GGATG	2 cut(s)	199, 548
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	166, 439
CciI	TCATGA	1 cut(s)	67
CfoI	GCGC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	217, 287, 508
CviAII	CATG	2 cut(s)	68, 396
CviJI	RGCY	9 cut(s)	12, 64, 144, 267, 336, 391, 413, 427, 517
CviKI_1	RGCY	9 cut(s)	12, 64, 144, 267, 336, 391, 413, 427, 517
CviQI	GTAC	3 cut(s)	217, 287, 508
DdeI	CTNAG	2 cut(s)	80, 386
DpnI	GATC	2 cut(s)	30, 277
DpnII	GATC	2 cut(s)	28, 275
DrdI	GACNNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	1 cut(s)	129
EaeI	YGGCCR	2 cut(s)	142, 515
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco105I	TACGTA	2 cut(s)	290, 511
Eco31I	GGTCTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	71, 399
FaqI	GGGAC	2 cut(s)	117, 125
FatI	CATG	2 cut(s)	67, 395
FbaI	TGATCA	1 cut(s)	275
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	2 cut(s)	186, 555
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	2 cut(s)	214, 355
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	334
HaeIII	GGCC	3 cut(s)	144, 391, 517
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	2 cut(s)	71, 399
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	1 cut(s)	564
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	3 cut(s)	33, 542, 563
Hpy188III	TCNNGA	4 cut(s)	68, 282, 482, 568
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	3 cut(s)	114, 289, 510
HpyCH4V	TGCA	2 cut(s)	195, 333
HpyF3I	CTNAG	2 cut(s)	80, 386
HpySE526I	ACGT	3 cut(s)	114, 289, 510
Hsp92II	CATG	2 cut(s)	71, 399
HspAI	GCGC	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	28, 275
LpnPI	CCDG	7 cut(s)	41, 214, 249, 270, 276, 373, 478
Lsp1109I	GCAGC	1 cut(s)	345
MaeI	CTAG	2 cut(s)	214, 355
MaeII	ACGT	3 cut(s)	114, 289, 510
MalI	GATC	2 cut(s)	30, 277
MboI	GATC	2 cut(s)	28, 275
MboII	GAAGA	2 cut(s)	141, 377
MlsI	TGGCCA	2 cut(s)	144, 517
MluCI	AATT	4 cut(s)	167, 221, 301, 359
MluNI	TGGCCA	2 cut(s)	144, 517
MlyI	GAGTC	1 cut(s)	558
MnlI	CCTC	2 cut(s)	214, 314
Mox20I	TGGCCA	2 cut(s)	144, 517
MscI	TGGCCA	2 cut(s)	144, 517
MseI	TTAA	2 cut(s)	154, 477
Msp20I	TGGCCA	2 cut(s)	144, 517
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	28, 275
NlaIII	CATG	2 cut(s)	71, 399
NlaIV	GGNNCC	1 cut(s)	463
NsbI	TGCGCA	1 cut(s)	183
PagI	TCATGA	1 cut(s)	67
PflFI	GACNNNGTC	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
Ppu21I	YACGTR	2 cut(s)	290, 511
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	463
PsyI	GACNNNGTC	1 cut(s)	129
RsaI	GTAC	3 cut(s)	218, 288, 509
RsaNI	GTAC	3 cut(s)	217, 287, 508
SaqAI	TTAA	2 cut(s)	154, 477
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	2 cut(s)	28, 275
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	1 cut(s)	558
ScrFI	CCNGG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
SnaBI	TACGTA	2 cut(s)	290, 511
Sse9I	AATT	4 cut(s)	167, 221, 301, 359
SspMI	CTAG	2 cut(s)	214, 355
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	3 cut(s)	117, 292, 513
TasI	AATT	4 cut(s)	167, 221, 301, 359
TatI	WGTACW	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	154, 477
Tru9I	TTAA	2 cut(s)	154, 477
TscAI	CASTG	2 cut(s)	166, 446
TseI	GCWGC	1 cut(s)	333
TspDTI	ATGAA	2 cut(s)	56, 214
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	2 cut(s)	166, 446
Tth111I	GACNNNGTC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	359
XspI	CTAG	2 cut(s)	214, 355
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.