Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012767.1

Orthogroup ID

OG0008145

Physical Location & Seq

Genomic Coordinates Forward (+)

14484 .. 16635

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012767.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

atggaactcttcgcaagttctcgagcttctcgagagagagtgagagatagatttactaatcttccagaggatgttgcttgtaaaattctttccttcgtcagttttagagacagtgcttgtgtgggatgtgtgtccaaaagatgtagagagttttctctatgcgttcagaacttggatcttgattccgcctatgcaatttacatgcgggataggttgaggttgttgaattgtttggataggttcttgtttcaacgcggggagaaggagataaagagctttcgtattcattggatctttgaaggagaaagtgcaagaaacgatgagcattttcgagtaatgtcatggatcaattatgcagtccagtgcaatgttggaagtcttaatcttgagctcagtatgtttggggggatgatgacattagaattgccgtcttgcatctttcattgcaagtctttgaggcatctaattgtggatgtattgaacacaggatggaagattcttaagacgccctcctttgcttgttccagtaatctccaatccttaaaactgaaaaatgttactattgaggaggggtttggtaaatggatctcatggtgttgcaaatgcataaaggaattatcacttgaacaggtattcaagacagaaagaatcagcattgaaagctcatctctggaatcatttagtcttaagagtgattatcgtttgtgttctgatgatctccttaagctctccatccttaacgtctcaggcatacatcattttgacaaggcgtttgagattctttgcagtgtaagcagagctaaagttctcgctttgatcggagacatcataaaggttgtgttcagggaaggcttcatgagaccacccttagataatgtttattgcttttctatacttgggacgttgactgacgaccttgtcccacctatggccaatcttcttaaaacagtgcctaatttgattagtttgcgcataagtaatgcagtcatccctctcaactctagtactaattcatctgggttcaatatcagttattggaaatccctgaacctggcttttgttgatcatcttgagtacgtatcaataccaattttcaacggagataatgaggtggagtttgcagcttatttgcttgaaaatgctaggaatttgaagagaatggtcatttaccactcaggccaacatggtgctataaagtggcttcaaaataaaagcttctgctattccactgccaatgttatctttatggaaccagtcaagcagttaatcaagaaaacaaaggaaacagaaaggagtacgtatggccattctattgaaatggaaaactcggatgttgatgtgttttggtcagactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

452

Amino Acids

51.72

Weight (kDa)

7.82

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300 FvH4_6g08300
rosa_chinensis	RchiOBHm_Chr3g0458171
rosa_multiflora	Rmu_co8222700.1_g000001 Rmu_sc0012767.1_g000003 Rmu_sc0012767.1_g000004 Rmu_sc0031170.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421240
rosa_rugosa	Rorug03G0025300
rosa_samantha	Rh3AG086100 Rh3BG088800 Rh3CG089400 Rh3DG089800
rosa_wichuraiana	Rw3G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	917
Acc16I	TGCGCA	1 cut(s)	971
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	186, 205, 255
AclWI	GGATC	4 cut(s)	183, 299, 353, 593
AcoI	YGGCCR	2 cut(s)	930, 1303
AcsI	RAATTY	2 cut(s)	84, 1147
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	3 cut(s)	1006, 1076, 1297
AfiI	CCNNNNNNNGG	2 cut(s)	928, 1051
AflII	CTTAAG	3 cut(s)	500, 686, 722
AjnI	CCWGG	1 cut(s)	1050
AluBI	AGCT	8 cut(s)	26, 276, 391, 663, 727, 800, 1124, 1215
AluI	AGCT	8 cut(s)	26, 276, 391, 663, 727, 800, 1124, 1215
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	4 cut(s)	102, 748, 816, 853
AlwI	GGATC	4 cut(s)	183, 299, 353, 593
Ama87I	CYCGRG	2 cut(s)	21, 30
AoxI	GGCC	3 cut(s)	930, 1177, 1303
ApeKI	GCWGC	1 cut(s)	1121
ApoI	RAATTY	2 cut(s)	84, 1147
ArsI	GACNNNNNNTTYG	2 cut(s)	755, 787
AspLEI	GCGC	1 cut(s)	972
AvaI	CYCGRG	2 cut(s)	21, 30
BalI	TGGCCA	2 cut(s)	932, 1305
BanII	GRGCYC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	1133
BccI	CCATC	2 cut(s)	483, 740
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	1052
BclI	TGATCA	1 cut(s)	1063
BcoDI	GTCTC	4 cut(s)	102, 748, 816, 853
BfaI	CTAG	2 cut(s)	1002, 1143
BfrI	CTTAAG	3 cut(s)	500, 686, 722
BisI	GCNGC	1 cut(s)	1122
BlsI	GCNGC	1 cut(s)	1123
BmcAI	AGTACT	1 cut(s)	1006
Bme1390I	CCNGG	1 cut(s)	1052
BmeT110I	CYCGRG	2 cut(s)	21, 30
BmiI	GGNNCC	1 cut(s)	1251
BmrFI	CCNGG	1 cut(s)	1052
BmsI	GCATC	2 cut(s)	444, 469
BpuEI	CTTGAG	2 cut(s)	407, 1091
BsaAI	YACGTR	2 cut(s)	1078, 1299
BsaHI	GRCGYC	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	853
Bsc4I	CCNNNNNNNGG	2 cut(s)	928, 1051
Bse1I	ACTGG	3 cut(s)	361, 525, 1253
Bse3DI	GCAATG	2 cut(s)	373, 442
BseBI	CCWGG	1 cut(s)	1052
BseGI	GGATG	8 cut(s)	76, 131, 414, 478, 494, 732, 987, 1336
BseLI	CCNNNNNNNGG	2 cut(s)	928, 1051
BseMI	GCAATG	2 cut(s)	373, 442
BseMII	CTCAG	3 cut(s)	406, 759, 1188
BseNI	ACTGG	3 cut(s)	361, 525, 1253
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	1 cut(s)	1133
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	932, 1179, 1305
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	2 cut(s)	21, 30
BslFI	GGGAC	2 cut(s)	905, 913
BslI	CCNNNNNNNGG	2 cut(s)	928, 1051
BsmAI	GTCTC	4 cut(s)	102, 748, 816, 853
BsmBI	CGTCTC	1 cut(s)	748
BsmFI	GGGAC	2 cut(s)	905, 913
BsnI	GGCC	3 cut(s)	932, 1179, 1305
Bso31I	GGTCTC	1 cut(s)	853
BsoBI	CYCGRG	2 cut(s)	21, 30
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	7 cut(s)	175, 291, 345, 585, 715, 816, 1063
BspACI	CCGC	3 cut(s)	186, 205, 255
BspANI	GGCC	3 cut(s)	932, 1179, 1305
BspCNI	CTCAG	3 cut(s)	405, 758, 1187
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	1 cut(s)	1251
BspPI	GGATC	4 cut(s)	183, 299, 353, 593
BspTI	CTTAAG	3 cut(s)	500, 686, 722
BspTNI	GGTCTC	1 cut(s)	853
BsrDI	GCAATG	2 cut(s)	373, 442
BsrI	ACTGG	3 cut(s)	361, 525, 1253
BssMI	GATC	7 cut(s)	175, 291, 345, 585, 715, 816, 1063
BssNI	GRCGYC	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	1052
Bst4CI	ACNGT	2 cut(s)	113, 949
Bst6I	CTCTTC	2 cut(s)	14, 1148
BstACI	GRCGYC	1 cut(s)	506
BstAFI	CTTAAG	3 cut(s)	500, 686, 722
BstBAI	YACGTR	2 cut(s)	1078, 1299
BstDEI	CTNAG	4 cut(s)	392, 745, 868, 1174
BstF5I	GGATG	8 cut(s)	76, 131, 414, 478, 494, 732, 987, 1336
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	972
BstKTI	GATC	7 cut(s)	178, 294, 348, 588, 718, 819, 1066
BstMAI	GTCTC	4 cut(s)	102, 748, 816, 853
BstMBI	GATC	7 cut(s)	175, 291, 345, 585, 715, 816, 1063
BstMWI	GCNNNNNNNGC	2 cut(s)	660, 792
BstNI	CCWGG	1 cut(s)	1052
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	1050
BstSNI	TACGTA	2 cut(s)	1078, 1299
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	1133
BstX2I	RGATCY	3 cut(s)	175, 291, 585
BstYI	RGATCY	3 cut(s)	175, 291, 585
BsuRI	GGCC	3 cut(s)	932, 1179, 1305
BtsCI	GGATG	8 cut(s)	76, 131, 414, 478, 494, 732, 987, 1336
BtsI	GCAGTG	2 cut(s)	793, 1227
BtsIMutI	CAGTG	5 cut(s)	118, 368, 793, 954, 1227
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	1 cut(s)	972
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	3 cut(s)	1005, 1075, 1296
CviAII	CATG	5 cut(s)	202, 342, 591, 856, 1184
CviQI	GTAC	3 cut(s)	1005, 1075, 1296
DdeI	CTNAG	4 cut(s)	392, 745, 868, 1174
DpnI	GATC	7 cut(s)	177, 293, 347, 587, 717, 818, 1065
DpnII	GATC	7 cut(s)	175, 291, 345, 585, 715, 816, 1063
DrdI	GACNNNNNNGTC	1 cut(s)	917
DseDI	GACNNNNNNGTC	1 cut(s)	917
EaeI	YGGCCR	2 cut(s)	930, 1303
Eam1104I	CTCTTC	2 cut(s)	14, 1148
EarI	CTCTTC	2 cut(s)	14, 1148
EciI	GGCGGA	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	391
Eco105I	TACGTA	2 cut(s)	1078, 1299
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	853
Eco53kI	GAGCTC	1 cut(s)	391
Eco88I	CYCGRG	2 cut(s)	21, 30
EcoICRI	GAGCTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	1050
EcoT22I	ATGCAT	1 cut(s)	608
EcoT38I	GRGCYC	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	748
FaeI	CATG	5 cut(s)	205, 345, 594, 859, 1187
FaqI	GGGAC	2 cut(s)	905, 913
FatI	CATG	5 cut(s)	201, 341, 590, 855, 1183
FauI	CCCGC	2 cut(s)	198, 248
FbaI	TGATCA	1 cut(s)	1063
Fnu4HI	GCNGC	1 cut(s)	1122
FokI	GGATG	8 cut(s)	83, 138, 421, 485, 501, 719, 974, 1343
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	1122
FspBI	CTAG	2 cut(s)	1002, 1143
FspI	TGCGCA	1 cut(s)	971
GlaI	GCGC	1 cut(s)	971
GluI	GCNGC	1 cut(s)	1122
HaeIII	GGCC	3 cut(s)	932, 1179, 1305
HgaI	GACGC	1 cut(s)	514
HhaI	GCGC	1 cut(s)	972
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	5 cut(s)	205, 345, 594, 859, 1187
Hin6I	GCGC	1 cut(s)	970
HinP1I	GCGC	1 cut(s)	970
HincII	GTYRAC	1 cut(s)	906
HindII	GTYRAC	1 cut(s)	906
HindIII	AAGCTT	1 cut(s)	1213
HinfI	GANTC	6 cut(s)	182, 496, 648, 674, 778, 1352
Hpy166II	GTNNAC	1 cut(s)	906
Hpy188I	TCNGA	5 cut(s)	168, 712, 821, 1330, 1351
Hpy8I	GTNNAC	1 cut(s)	906
HpyAV	CCTTC	4 cut(s)	103, 256, 293, 842
HpyCH4III	ACNGT	2 cut(s)	113, 949
HpyCH4IV	ACGT	4 cut(s)	741, 902, 1077, 1298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	660, 792
HpyF3I	CTNAG	4 cut(s)	392, 745, 868, 1174
HpySE526I	ACGT	4 cut(s)	741, 902, 1077, 1298
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	5 cut(s)	205, 345, 594, 859, 1187
HspAI	GCGC	1 cut(s)	970
Ksp22I	TGATCA	1 cut(s)	1063
Kzo9I	GATC	7 cut(s)	175, 291, 345, 585, 715, 816, 1063
Lsp1109I	GCAGC	1 cut(s)	1133
LweI	GCATC	2 cut(s)	444, 469
MaeI	CTAG	2 cut(s)	1002, 1143
MaeII	ACGT	4 cut(s)	741, 902, 1077, 1298
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	7 cut(s)	177, 293, 347, 587, 717, 818, 1065
MboI	GATC	7 cut(s)	175, 291, 345, 585, 715, 816, 1063
MboII	GAAGA	4 cut(s)	53, 505, 929, 1165
MflI	RGATCY	3 cut(s)	175, 291, 585
MhlI	GDGCHC	1 cut(s)	393
MlsI	TGGCCA	2 cut(s)	932, 1305
MluNI	TGGCCA	2 cut(s)	932, 1305
MlyI	GAGTC	1 cut(s)	1346
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	8 cut(s)	61, 210, 450, 520, 559, 562, 1002, 1102
Mox20I	TGGCCA	2 cut(s)	932, 1305
Mph1103I	ATGCAT	1 cut(s)	608
MscI	TGGCCA	2 cut(s)	932, 1305
MseI	TTAA	8 cut(s)	381, 501, 542, 687, 723, 738, 942, 1265
Msp20I	TGGCCA	2 cut(s)	932, 1305
MspCI	CTTAAG	3 cut(s)	500, 686, 722
MspR9I	CCNGG	1 cut(s)	1052
MvaI	CCWGG	1 cut(s)	1052
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	660, 792
NdeII	GATC	7 cut(s)	175, 291, 345, 585, 715, 816, 1063
NlaIII	CATG	5 cut(s)	205, 345, 594, 859, 1187
NlaIV	GGNNCC	1 cut(s)	1251
NsbI	TGCGCA	1 cut(s)	971
NsiI	ATGCAT	1 cut(s)	608
NspI	RCATGY	1 cut(s)	205
PaeR7I	CTCGAG	2 cut(s)	21, 30
PagI	TCATGA	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PfeI	GAWTC	5 cut(s)	182, 496, 648, 674, 778
PflFI	GACNNNGTC	1 cut(s)	917
PkrI	GCNGC	1 cut(s)	1123
PleI	GAGTC	1 cut(s)	1346
PpsI	GAGTC	1 cut(s)	1346
Ppu21I	YACGTR	2 cut(s)	1078, 1299
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	1050
PspGI	CCWGG	1 cut(s)	1050
PspN4I	GGNNCC	1 cut(s)	1251
PsuI	RGATCY	3 cut(s)	175, 291, 585
PsyI	GACNNNGTC	1 cut(s)	917
RsaI	GTAC	3 cut(s)	1006, 1076, 1297
RsaNI	GTAC	3 cut(s)	1005, 1075, 1296
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	8 cut(s)	381, 501, 542, 687, 723, 738, 942, 1265
SatI	GCNGC	1 cut(s)	1122
Sau3AI	GATC	7 cut(s)	175, 291, 345, 585, 715, 816, 1063
ScaI	AGTACT	1 cut(s)	1006
SchI	GAGTC	1 cut(s)	1346
ScrFI	CCNGG	1 cut(s)	1052
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	2 cut(s)	444, 469
Sfr274I	CTCGAG	2 cut(s)	21, 30
SlaI	CTCGAG	2 cut(s)	21, 30
SmlI	CTYRAG	7 cut(s)	21, 30, 386, 500, 686, 722, 1070
SmoI	CTYRAG	7 cut(s)	21, 30, 386, 500, 686, 722, 1070
SnaBI	TACGTA	2 cut(s)	1078, 1299
SsiI	CCGC	3 cut(s)	186, 205, 255
SspMI	CTAG	2 cut(s)	1002, 1143
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	1050
TaaI	ACNGT	2 cut(s)	113, 949
TaiI	ACGT	4 cut(s)	744, 905, 1080, 1301
TaqI	TCGA	3 cut(s)	22, 31, 331
TatI	WGTACW	1 cut(s)	1004
TfiI	GAWTC	5 cut(s)	182, 496, 648, 674, 778
Tru1I	TTAA	8 cut(s)	381, 501, 542, 687, 723, 738, 942, 1265
Tru9I	TTAA	8 cut(s)	381, 501, 542, 687, 723, 738, 942, 1265
TscAI	CASTG	5 cut(s)	118, 368, 793, 954, 1234
TseI	GCWGC	1 cut(s)	1121
TspDTI	ATGAA	4 cut(s)	275, 431, 844, 1002
TspGWI	ACGGA	1 cut(s)	1113
TspRI	CASTG	5 cut(s)	118, 368, 793, 954, 1234
Tth111I	GACNNNGTC	1 cut(s)	917
Vha464I	CTTAAG	3 cut(s)	500, 686, 722
XapI	RAATTY	2 cut(s)	84, 1147
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XhoI	CTCGAG	2 cut(s)	21, 30
XspI	CTAG	2 cut(s)	1002, 1143
ZrmI	AGTACT	1 cut(s)	1006
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.