FvH4_6g08390

Domain of unknown function

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
4976318 .. 4980802
4485 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08390.t8

Sequence Viewer

Length: 1809 bp
ATGTACTCCAACTCAGGCGGTGAAATCACAGATCAAGAACACCCAGTTGAGGAGGTTTACCGGAGAAGAAAACCCAGAAAGCCCACTTCACTTGAACAGCCCTTAAGGGAATCGAATTCGAGTAGAAGAGAGAAGTTCAGGGTGAGTTTGGCTGCTCCGGTTAAGCGAATCAGTTGGAACCGTTTTCTTTCCACAAGAGGGAGGACAAGTATTGCTGTTGGTGCTTGCTTCGAGTATCAGCCTCCACAGAAGAAGGCTAAAAGGAAAGGAAGACCTCCTCGTCCCCAAAGTAAGTACAACTTTGAAAAGGAACGAGCTTACTTTGAGAAGGTTGATGAAGAAGAATTGATAGAGGAGAGCCCCTCTCCCATACCCCGCACATGGGTCGCTGGTATCCCAAAAGAAAATGTTGAAATACCCAAGTTGTGCACAGCATTAGAGAAATGGTTGTTATCCAAGAAGTTGAATTTTGGTTTAGGGTCTTCCAACACATTGGCGAGGATCCTACGAACTCCAGGCATGCGGCCCTCACCCAGTAGTGGTATCAATTTTGAATCTTCAAGTGTGAAAACCCCAGAAAGATCATCTAAAGTAAATTCTCGCTTGTCTTCTGGCCTAATTAAATTCGACTTAAGTTTGCTCGATAGAAGTGTGCATGAAATGAACACCACTAAATCACTTCCAGAGGTGGGCAATGAAGGTTTGGATATAGACGCTGCTGTAAAAGAACATTATGAAGATATAGATGCTGCTGTAAAAGAACTCTCTTTGTTATCAACTTCTGAGGAGTTGGATCGATTTAATGCTCTATTAGAAGTTTGTGAGCAGTCATCTCCCTCAAAATTACAGGATGTATTCTCCAAATATTGTGACCTGGAAGATATTGAAAAAGTTGGAGAAGGGACATATGGAGAAGCTTTCAAGGCTGGCAACTTTGTTTGCAAAATAGTTCCTATCGATGGCAAATTACTAGTGAATCAGGAAAAGCAAAAGACATCTGAAGAATTGCTAGAGGAGGTGGTGCTTTCCCGCACTCTTAATTACTTGAGAGGAAACAATGATAATGTTCAGAATGTATGCACAACATTTATAGAAACAAAAGACTTGAGGGTGTGTCAAGGCTGTTATGACGCTGCCTTGATCAAAGCATGGGAAGATTGGGATGAAAATCATGTTTCAGAAAATACTCACCCTAGGGAATTTCCAGAGAACCAGTTCTATGTCATATTTGTTTTAGAGCATGGTGGCCAAGATCTCGAAAACTTTGTACTTCTGAACTGTGATGAGGCAAGGAGTTTATTAGTACAGGTTACTACTGCACTTGCTGTAGCTGAAGCGGCATATGAATTTGAGCACCGTGATCTCCACTGGGGAAACATACTTTTGAGTAGGAGTGATTCAGTTACAATGCAGTTCACTCTTGATGGAAGGCAGATGCTTATACGCACATTTGGGCTAGCAATATCAATCATTGATTTCACTCTGTCGAGAATCAATACCGGCGAAGCCATACTCTTTCTAGACCTATCTTCAGATCCGGCGCTTTTTAACGGTCAGAAAGGAGATATACAAGCAGAAACTTACCGGAAAATGAAGAAGGTGACACAAGACCAGTGGAAGGAAAGCTTCCCTAGAACAAATGTGTTGTGGCTGGTGTACTTGGTGGACATATTACTCCTAAACAAATCATTTGATCGTACTTCAAAGGATGAAAGAGATTTGCGCTCGTTGAAGAAACGGCTTAATCAATATCAGTCAGCAAGAGAAGCACTCTTTGATCCTTCTTTCAGCGATCTGTTTGTTGATTGA

Protein Analysis

603

Amino Acids

68.71

Weight (kDa)

5.63

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Haspin_kinase PF12330 255 - 541 5.6e-41 Haspin like kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 279
AciI CCGC 5 cut(s) 18, 376, 523, 1030, 1337
AclWI GGATC 5 cut(s) 496, 509, 801, 1529, 1772
AcoI YGGCCR 1 cut(s) 1246
AcsI RAATTY 6 cut(s) 115, 466, 595, 623, 1199, 1346
AcuI CTGAAG 3 cut(s) 1020, 1353, 1515
AfaI GTAC 6 cut(s) 5, 296, 1269, 1305, 1658, 1699
AfiI CCNNNNNNNGG 8 cut(s) 49, 198, 381, 382, 539, 689, 959, 1618
AflII CTTAAG 2 cut(s) 103, 631
AhlI ACTAGT 1 cut(s) 970
AjnI CCWGG 2 cut(s) 514, 873
AluBI AGCT 4 cut(s) 317, 917, 1331, 1626
AluI AGCT 4 cut(s) 317, 917, 1331, 1626
Alw21I GWGCWC 2 cut(s) 431, 1356
Alw44I GTGCAC 1 cut(s) 427
AlwI GGATC 5 cut(s) 496, 509, 801, 1529, 1772
AoxI GGCC 3 cut(s) 524, 613, 1246
ApaLI GTGCAC 1 cut(s) 427
ApeKI GCWGC 4 cut(s) 152, 716, 749, 1133
ApoI RAATTY 6 cut(s) 115, 466, 595, 623, 1199, 1346
Asp700I GAANNNNTTC 1 cut(s) 1214
AspA2I CCTAGG 1 cut(s) 1193
AspLEI GCGC 2 cut(s) 1543, 1725
AspS9I GGNCC 1 cut(s) 525
AsuHPI GGTGA 5 cut(s) 32, 154, 522, 1181, 1612
AsuNHI GCTAGC 1 cut(s) 1456
AvrII CCTAGG 1 cut(s) 1193
BaeGI GKGCMC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 1248
BamHI GGATCC 1 cut(s) 501
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 3 cut(s) 277, 474, 600
Bbv12I GWGCWC 2 cut(s) 431, 1356
BbvI GCAGC 4 cut(s) 139, 703, 736, 1120
BccI CCATC 2 cut(s) 953, 1418
BceAI ACGGC 1 cut(s) 1754
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciT130I CCWGG 2 cut(s) 516, 875
BciVI GTATCC 1 cut(s) 404
BclI TGATCA 1 cut(s) 1140
BcuI ACTAGT 1 cut(s) 970
BfaI CTAG 6 cut(s) 971, 1010, 1194, 1457, 1520, 1632
BfmI CTRYAG 1 cut(s) 1326
BfoI RGCGCY 1 cut(s) 1544
BfrI CTTAAG 2 cut(s) 103, 631
BfuI GTATCC 1 cut(s) 404
BglII AGATCT 1 cut(s) 1252
BisI GCNGC 6 cut(s) 153, 524, 717, 750, 1134, 1338
BlnI CCTAGG 1 cut(s) 1193
BlsI GCNGC 6 cut(s) 154, 525, 718, 751, 1135, 1339
Bme1390I CCNGG 2 cut(s) 516, 875
BmgT120I GGNCC 1 cut(s) 525
BmiI GGNNCC 2 cut(s) 179, 503
BmrFI CCNGG 2 cut(s) 516, 875
BmrI ACTGGG 3 cut(s) 38, 528, 1378
BmsI GCATC 2 cut(s) 736, 1425
BmtI GCTAGC 1 cut(s) 1460
BmuI ACTGGG 3 cut(s) 38, 528, 1378
BpiI GAAGAC 3 cut(s) 277, 474, 600
BplI GAGNNNNNCTC 6 cut(s) 347, 379, 349, 381, 1755, 1787
BpmI CTGGAG 1 cut(s) 498
BpuEI CTTGAG 2 cut(s) 1066, 1126
Bsa29I ATCGAT 2 cut(s) 796, 957
BsaBI GATNNNNATC 1 cut(s) 1167
BsaJI CCNNGG 1 cut(s) 1193
BsaWI WCCGGW 3 cut(s) 60, 157, 1584
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 8 cut(s) 49, 198, 381, 382, 539, 689, 959, 1618
Bse118I RCCGGY 1 cut(s) 1499
Bse1I ACTGG 5 cut(s) 44, 534, 1213, 1373, 1612
Bse3DI GCAATG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 1167
BseBI CCWGG 2 cut(s) 516, 875
BseCI ATCGAT 2 cut(s) 796, 957
BseDI CCNNGG 1 cut(s) 1193
BseGI GGATG 3 cut(s) 856, 1168, 1714
BseJI GATNNNNATC 1 cut(s) 1167
BseLI CCNNNNNNNGG 8 cut(s) 49, 198, 381, 382, 539, 689, 959, 1618
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 2 cut(s) 27, 774
BseNI ACTGG 5 cut(s) 44, 534, 1213, 1373, 1612
BseRI GAGGAG 5 cut(s) 65, 267, 368, 800, 1028
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 4 cut(s) 139, 703, 736, 1120
BsgI GTGCAG 1 cut(s) 1302
BshFI GGCC 3 cut(s) 526, 615, 1248
BshVI ATCGAT 2 cut(s) 796, 957
BsiHKAI GWGCWC 2 cut(s) 431, 1356
BsiSI CCGG 5 cut(s) 61, 158, 1500, 1538, 1585
BslFI GGGAC 2 cut(s) 267, 916
BslI CCNNNNNNNGG 8 cut(s) 49, 198, 381, 382, 539, 689, 959, 1618
BsmFI GGGAC 2 cut(s) 267, 916
BsnI GGCC 3 cut(s) 526, 615, 1248
Bsp1286I GDGCHC 3 cut(s) 362, 431, 1356
BspACI CCGC 5 cut(s) 18, 376, 523, 1030, 1337
BspANI GGCC 3 cut(s) 526, 615, 1248
BspCNI CTCAG 2 cut(s) 26, 775
BspDI ATCGAT 2 cut(s) 796, 957
BspLI GGNNCC 2 cut(s) 179, 503
BspOI GCTAGC 1 cut(s) 1460
BspPI GGATC 5 cut(s) 496, 509, 801, 1529, 1772
BspTI CTTAAG 2 cut(s) 103, 631
BsrDI GCAATG 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 1499
BsrI ACTGG 5 cut(s) 44, 534, 1213, 1373, 1612
BssAI RCCGGY 1 cut(s) 1499
BssECI CCNNGG 1 cut(s) 1193
BssT1I CCWWGG 1 cut(s) 1193
Bst2UI CCWGG 2 cut(s) 516, 875
Bst4CI ACNGT 4 cut(s) 182, 1280, 1358, 1553
Bst6I CTCTTC 1 cut(s) 121
BstAFI CTTAAG 2 cut(s) 103, 631
BstC8I GCNNGC 4 cut(s) 226, 521, 928, 1458
BstDEI CTNAG 2 cut(s) 13, 783
BstF5I GGATG 3 cut(s) 856, 1168, 1714
BstH2I RGCGCY 1 cut(s) 1544
BstHHI GCGC 2 cut(s) 1543, 1725
BstMWI GCNNNNNNNGC 4 cut(s) 221, 923, 1337, 1766
BstNI CCWGG 2 cut(s) 516, 875
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 2 cut(s) 514, 873
BstSFI CTRYAG 1 cut(s) 1326
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 4 cut(s) 139, 703, 736, 1120
BstV2I GAAGAC 3 cut(s) 277, 474, 600
BstX2I RGATCY 3 cut(s) 501, 1252, 1534
BstXI CCANNNNNNTGG 1 cut(s) 493
BstYI RGATCY 3 cut(s) 501, 1252, 1534
Bsu15I ATCGAT 2 cut(s) 796, 957
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 3 cut(s) 526, 615, 1248
BsuTUI ATCGAT 2 cut(s) 796, 957
BtsCI GGATG 3 cut(s) 856, 1168, 1714
BtsIMutI CAGTG 2 cut(s) 1366, 1619
Cac8I GCNNGC 4 cut(s) 226, 521, 928, 1458
CfoI GCGC 2 cut(s) 1543, 1725
Cfr10I RCCGGY 1 cut(s) 1499
Cfr13I GGNCC 1 cut(s) 525
ClaI ATCGAT 2 cut(s) 796, 957
CseI GACGC 2 cut(s) 722, 1139
Csp6I GTAC 6 cut(s) 4, 295, 1268, 1304, 1657, 1698
CspCI CAANNNNNGTGG 4 cut(s) 73, 108, 1595, 1630
CviAII CATG 6 cut(s) 381, 520, 656, 1149, 1172, 1241
CviQI GTAC 6 cut(s) 4, 295, 1268, 1304, 1657, 1698
DdeI CTNAG 2 cut(s) 13, 783
DrdI GACNNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 1246
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 1193
Eco24I GRGCYC 1 cut(s) 362
Eco57I CTGAAG 3 cut(s) 1020, 1353, 1515
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 514, 873
EcoT14I CCWWGG 1 cut(s) 1193
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 1193
FaeI CATG 6 cut(s) 384, 523, 659, 1152, 1175, 1244
FalI AAGNNNNNCTT 4 cut(s) 284, 316, 1610, 1642
FaqI GGGAC 2 cut(s) 267, 916
FatI CATG 6 cut(s) 380, 519, 655, 1148, 1171, 1240
FauI CCCGC 2 cut(s) 383, 1037
FauNDI CATATG 2 cut(s) 907, 1342
FbaI TGATCA 1 cut(s) 1140
Fnu4HI GCNGC 6 cut(s) 153, 524, 717, 750, 1134, 1338
FokI GGATG 3 cut(s) 863, 1175, 1721
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 6 cut(s) 153, 524, 717, 750, 1134, 1338
FspBI CTAG 6 cut(s) 971, 1010, 1194, 1457, 1520, 1632
GlaI GCGC 2 cut(s) 1542, 1724
GluI GCNGC 6 cut(s) 153, 524, 717, 750, 1134, 1338
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 1544
HaeIII GGCC 3 cut(s) 526, 615, 1248
HapII CCGG 5 cut(s) 61, 158, 1500, 1538, 1585
HgaI GACGC 2 cut(s) 722, 1139
HhaI GCGC 2 cut(s) 1543, 1725
Hin1II CATG 6 cut(s) 384, 523, 659, 1152, 1175, 1244
Hin6I GCGC 2 cut(s) 1541, 1723
HinP1I GCGC 2 cut(s) 1541, 1723
HindIII AAGCTT 2 cut(s) 915, 1624
HinfI GANTC 6 cut(s) 110, 168, 554, 976, 1397, 1491
HpaII CCGG 5 cut(s) 61, 158, 1500, 1538, 1585
HphI GGTGA 5 cut(s) 32, 154, 522, 1181, 1612
Hpy166II GTNNAC 5 cut(s) 58, 429, 1416, 1657, 1666
Hpy188I TCNGA 7 cut(s) 784, 1000, 1071, 1180, 1275, 1534, 1557
Hpy188III TCNNGA 8 cut(s) 35, 683, 980, 1205, 1256, 1421, 1488, 1520
Hpy8I GTNNAC 5 cut(s) 58, 429, 1416, 1657, 1666
HpyAV CCTTC 8 cut(s) 247, 322, 692, 893, 1422, 1591, 1612, 1791
HpyCH4III ACNGT 4 cut(s) 182, 1280, 1358, 1553
HpyCH4V TGCA 6 cut(s) 429, 655, 942, 1080, 1319, 1411
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 923, 1337, 1766
HpyF3I CTNAG 2 cut(s) 13, 783
Hsp92II CATG 6 cut(s) 384, 523, 659, 1152, 1175, 1244
HspAI GCGC 2 cut(s) 1541, 1723
Ksp22I TGATCA 1 cut(s) 1140
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 4 cut(s) 139, 703, 736, 1120
LweI GCATC 2 cut(s) 736, 1425
MaeI CTAG 6 cut(s) 971, 1010, 1194, 1457, 1520, 1632
MaeIII GTNAC 4 cut(s) 869, 1309, 1402, 1600
MflI RGATCY 3 cut(s) 501, 1252, 1534
MhlI GDGCHC 3 cut(s) 362, 431, 1356
MlsI TGGCCA 1 cut(s) 1248
MluNI TGGCCA 1 cut(s) 1248
MmeI TCCRAC 5 cut(s) 33, 155, 510, 771, 874
Mox20I TGGCCA 1 cut(s) 1248
MroXI GAANNNNTTC 1 cut(s) 1214
MscI TGGCCA 1 cut(s) 1248
MseI TTAA 8 cut(s) 104, 162, 621, 632, 801, 1038, 1548, 1743
Msp20I TGGCCA 1 cut(s) 1248
MspCI CTTAAG 2 cut(s) 103, 631
MspI CCGG 5 cut(s) 61, 158, 1500, 1538, 1585
MspR9I CCNGG 2 cut(s) 516, 875
MvaI CCWGG 2 cut(s) 516, 875
MwoI GCNNNNNNNGC 4 cut(s) 221, 923, 1337, 1766
NdeI CATATG 2 cut(s) 907, 1342
NheI GCTAGC 1 cut(s) 1456
NlaIII CATG 6 cut(s) 384, 523, 659, 1152, 1175, 1244
NlaIV GGNNCC 2 cut(s) 179, 503
NmuCI GTSAC 2 cut(s) 869, 1600
NspI RCATGY 1 cut(s) 523
PaeI GCATGC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 1214
PfeI GAWTC 6 cut(s) 110, 168, 554, 976, 1397, 1491
PkrI GCNGC 6 cut(s) 154, 525, 718, 751, 1135, 1339
Psp6I CCWGG 2 cut(s) 514, 873
PspGI CCWGG 2 cut(s) 514, 873
PspN4I GGNNCC 2 cut(s) 179, 503
PspPI GGNCC 1 cut(s) 525
PsuI RGATCY 3 cut(s) 501, 1252, 1534
RsaI GTAC 6 cut(s) 5, 296, 1269, 1305, 1658, 1699
RsaNI GTAC 6 cut(s) 4, 295, 1268, 1304, 1657, 1698
SaqAI TTAA 8 cut(s) 104, 162, 621, 632, 801, 1038, 1548, 1743
SatI GCNGC 6 cut(s) 153, 524, 717, 750, 1134, 1338
Sau96I GGNCC 1 cut(s) 525
ScrFI CCNGG 2 cut(s) 516, 875
SduI GDGCHC 3 cut(s) 362, 431, 1356
SfaNI GCATC 2 cut(s) 736, 1425
SfcI CTRYAG 1 cut(s) 1326
SmlI CTYRAG 4 cut(s) 103, 631, 1045, 1105
SmoI CTYRAG 4 cut(s) 103, 631, 1045, 1105
SpeI ACTAGT 1 cut(s) 970
SphI GCATGC 1 cut(s) 523
SsiI CCGC 5 cut(s) 18, 376, 523, 1030, 1337
SspI AATATT 1 cut(s) 866
SspMI CTAG 6 cut(s) 971, 1010, 1194, 1457, 1520, 1632
StyD4I CCNGG 2 cut(s) 514, 873
StyI CCWWGG 1 cut(s) 1193
TaaI ACNGT 4 cut(s) 182, 1280, 1358, 1553
TaqI TCGA 9 cut(s) 113, 119, 231, 627, 642, 796, 957, 1257, 1487
TatI WGTACW 5 cut(s) 3, 294, 1267, 1303, 1656
TauI GCSGC 2 cut(s) 526, 1340
TfiI GAWTC 6 cut(s) 110, 168, 554, 976, 1397, 1491
Tru1I TTAA 8 cut(s) 104, 162, 621, 632, 801, 1038, 1548, 1743
Tru9I TTAA 8 cut(s) 104, 162, 621, 632, 801, 1038, 1548, 1743
TscAI CASTG 2 cut(s) 1373, 1619
TseFI GTSAC 2 cut(s) 869, 1600
TseI GCWGC 4 cut(s) 152, 716, 749, 1133
Tsp45I GTSAC 2 cut(s) 869, 1600
TspDTI ATGAA 9 cut(s) 351, 672, 677, 711, 750, 1179, 1359, 1607, 1725
TspRI CASTG 2 cut(s) 1373, 1619
Vha464I CTTAAG 2 cut(s) 103, 631
VneI GTGCAC 1 cut(s) 427
XapI RAATTY 6 cut(s) 115, 466, 595, 623, 1199, 1346
XbaI TCTAGA 1 cut(s) 1519
XceI RCATGY 1 cut(s) 523
XmaJI CCTAGG 1 cut(s) 1193
XmnI GAANNNNTTC 1 cut(s) 1214
XspI CTAG 6 cut(s) 971, 1010, 1194, 1457, 1520, 1632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.