Rmu_sc0007338.1_g000011

Domain of unknown function

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007338.1
Physical Location & Seq
Forward (+)
62476 .. 66895
4420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007338.1_g000011.1.cds

Sequence Viewer

Length: 2232 bp
atgaccgacctcctgacccgtttgacccgacccgcccactctagccgttcacattaccaaaatgttgaactggttgacagcacagaagttcccgcgcacttccgctgccataaaaattggttagggtttcagtatcgtatccaaaaagctttcactcatcccgaggcagaagacgaacccatttctctacttgagcttctaaaatgtactccaacccaggcgggaaattcaccgatcaagaacacccagttgaggaggtttacagaagaagaaaacccagaaagcccactccagatgaagaacccttgtataagggaatcgaattcgagtcgaaaagagaagcttagggtgagtttggctgctgctgctccggttaagcgaatcagttggaaccgttttctttccacaagagggaggacaagtattgctgttggtgcttgtttggactatcagcctccacggaagaaggctaaaaggaaaggaagacctcctcgtcccaaaagtaagtacaactttgaaaaggaacgagcttactttgagaagcttgatgaagaagaattgatagaactcttgaaagaaacttgcattttctgttttagtaagtacaactttgaaaaggaacgagcttactttgagaagcttgatgaagaagaattgatagaggagagcccctcgcccattccccgcacatgggttgctggaatcccaaaggggaatgttgaaatacccaagttgtgctcagcattagagaaggagagcccctcgcccataccccgcacatgggttgctggaatcccaaaggggaatgttgaaatacccaagttgtgctcagcattagagaaatggttattatccaagaagttcaatttcggtttagggtcttccaacacattggctaggatcctacaatcttcagccatgcggccctcgcccattggtggtatcaattttgaaccttcaagtttgaaaaccccagaaagatcttctagagtcaattctcgcttgtcttctggccaaatttgttttgatttgagtttgctcgatggaagtgtgcatgaaaggagcacccccaaatcacttcctggtgtgggcaatgaggattgtgaagatatagatgctgctgtaaaagaactctctttggtatcaacttctgaggagttggatcgatttaatgctctgttagaagtttgtggccagtcatctccctcaaaattacaggatgtattttccaaatattgtgatccagaagagattgaaaaagtcggcgaagggacatatggagaagctttcaaggttggcaactgcgtttgcaaaatagttcctattgatggcaacttacgagtgaatggggttgaagtgcaaaagagatctgaagaattgctagaggaggtcgtgctttcccgcactcttaattacttgagaggaaatgatgataatgttcagaatgtatgcacgacatttatagaaacaaaagatttgagggtgtgccaaggctcttatgacactgccttgatcaaagcatgggaagcttgggatgaaaactgtccttcagaaaatgatcaccctgaggcgtttccagagaaccaggtttccttgtctaatttgatgtttgctttgtctgtattgcatttctatgtcgtgtttgttttagagcatggtggcaaagatctggaaagctttgtacttctgaactttgacgaggcaaggagtttattaatacaggttacagctgcccttgctgtggctgaagcggcatatgaatttgagcaccgtgatctccactggggaaacatacttttgagaaggagtggttcagttacaatgcagttcactcttgaaggaaagcagatgctcatacgcacatttggattagcaatatcaatcattgatttcactctttcaagaatcaatactggtgaagccatactctttctagacctatcttcagatcctgagctttttaatggtccaaaaagcgataaacaatcagaaacttacaggaaaatgaagaaggtaacacaagaccactggaaggaaagcttccctagaacaaatgtgttgtggttgctgtacttggtggacatattactcctaaacaaagcatttgatcgtacttcgaaggatgagagagatttgcgcgcgttgaagaagcggcttgatcaatatcagtcagcaagagaagcactttttgatccttgtttcagtgacttgtttgttggttgtgatagttga

Protein Analysis

743

Amino Acids

84.27

Weight (kDa)

5.86

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 492
AccII CGCG 3 cut(s) 95, 2139, 2141
AclWI GGATC 6 cut(s) 895, 908, 1170, 1235, 1943, 2186
AcoI YGGCCR 2 cut(s) 1012, 1192
AcsI RAATTY 4 cut(s) 226, 322, 1017, 1760
AcuI CTGAAG 5 cut(s) 897, 1392, 1533, 1767, 1929
AfaI GTAC 6 cut(s) 208, 509, 605, 1683, 2072, 2113
AjnI CCWGG 3 cut(s) 216, 1081, 1584
AloI GAACNNNNNNTCC 2 cut(s) 1574, 1606
Alw21I GWGCWC 4 cut(s) 740, 830, 1067, 1770
AlwI GGATC 6 cut(s) 895, 908, 1170, 1235, 1943, 2186
AlwNI CAGNNNCTG 1 cut(s) 1952
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 3 cut(s) 923, 1012, 1192
ApeKI GCWGC 6 cut(s) 105, 359, 362, 365, 1118, 1730
ApoI RAATTY 4 cut(s) 226, 322, 1017, 1760
AseI ATTAAT 1 cut(s) 1715
AspLEI GCGC 3 cut(s) 97, 2139, 2141
AspS9I GGNCC 2 cut(s) 924, 1967
AsuHPI GGTGA 4 cut(s) 222, 361, 1553, 1928
AsuII TTCGAA 1 cut(s) 2117
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 1967
AxyI CCTNAGG 1 cut(s) 1566
BalI TGGCCA 2 cut(s) 1014, 1194
BamHI GGATCC 1 cut(s) 900
BanII GRGCYC 2 cut(s) 671, 761
BbsI GAAGAC 4 cut(s) 177, 490, 873, 999
Bbv12I GWGCWC 4 cut(s) 740, 830, 1067, 1770
BbvI GCAGC 6 cut(s) 92, 346, 349, 352, 1105, 1717
BccI CCATC 2 cut(s) 1037, 1322
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 3 cut(s) 218, 1083, 1586
BciVI GTATCC 1 cut(s) 149
BclI TGATCA 3 cut(s) 1512, 1558, 2158
BfaI CTAG 6 cut(s) 42, 897, 987, 1382, 1934, 2046
BfuI GTATCC 1 cut(s) 149
BglII AGATCT 3 cut(s) 980, 1367, 1666
BisI GCNGC 9 cut(s) 106, 360, 363, 366, 923, 1119, 1731, 1752, 2153
BlpI GCTNAGC 2 cut(s) 739, 829
BlsI GCNGC 9 cut(s) 107, 361, 364, 367, 924, 1120, 1732, 1753, 2154
Bme1390I CCNGG 3 cut(s) 218, 1083, 1586
Bme18I GGWCC 1 cut(s) 1967
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 924, 1967
BmiI GGNNCC 2 cut(s) 392, 902
BmrFI CCNGG 3 cut(s) 218, 1083, 1586
BmrI ACTGGG 2 cut(s) 241, 1792
BmsI GCATC 2 cut(s) 1105, 1839
BmuI ACTGGG 2 cut(s) 241, 1792
BpiI GAAGAC 4 cut(s) 177, 490, 873, 999
BplI GAGNNNNNCTC 4 cut(s) 656, 688, 746, 778
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 2 cut(s) 344, 1953
Bpu1102I GCTNAGC 2 cut(s) 739, 829
Bpu14I TTCGAA 1 cut(s) 2117
BpuEI CTTGAG 2 cut(s) 212, 1438
Bsa29I ATCGAT 1 cut(s) 1165
BsaBI GATNNNNATC 1 cut(s) 2163
BsaJI CCNNGG 4 cut(s) 162, 216, 458, 1489
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bse1I ACTGG 6 cut(s) 75, 247, 1195, 1787, 1918, 2033
Bse21I CCTNAGG 1 cut(s) 1566
Bse3DI GCAATG 1 cut(s) 1099
Bse8I GATNNNNATC 1 cut(s) 2163
BseBI CCWGG 3 cut(s) 218, 1083, 1586
BseCI ATCGAT 1 cut(s) 1165
BseDI CCNNGG 4 cut(s) 162, 216, 458, 1489
BseGI GGATG 4 cut(s) 157, 1225, 1540, 2128
BseJI GATNNNNATC 1 cut(s) 2163
BseMI GCAATG 1 cut(s) 1099
BseMII CTCAG 5 cut(s) 753, 843, 1143, 1557, 1944
BseNI ACTGG 6 cut(s) 75, 247, 1195, 1787, 1918, 2033
BsePI GCGCGC 1 cut(s) 2137
BseRI GAGGAG 5 cut(s) 268, 480, 677, 1169, 1400
BseXI GCAGC 6 cut(s) 92, 346, 349, 352, 1105, 1717
Bsh1236I CGCG 3 cut(s) 95, 2139, 2141
BshFI GGCC 3 cut(s) 925, 1014, 1194
BshVI ATCGAT 1 cut(s) 1165
BsiHKAI GWGCWC 4 cut(s) 740, 830, 1067, 1770
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 2 cut(s) 480, 1285
BsmFI GGGAC 2 cut(s) 480, 1285
BsnI GGCC 3 cut(s) 925, 1014, 1194
BsoBI CYCGRG 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 2117
Bsp1286I GDGCHC 6 cut(s) 671, 740, 761, 830, 1067, 1770
Bsp1720I GCTNAGC 2 cut(s) 739, 829
BspANI GGCC 3 cut(s) 925, 1014, 1194
BspCNI CTCAG 5 cut(s) 752, 842, 1144, 1558, 1945
BspDI ATCGAT 1 cut(s) 1165
BspFNI CGCG 3 cut(s) 95, 2139, 2141
BspLI GGNNCC 2 cut(s) 392, 902
BspPI GGATC 6 cut(s) 895, 908, 1170, 1235, 1943, 2186
BspT104I TTCGAA 1 cut(s) 2117
BsrDI GCAATG 1 cut(s) 1099
BsrI ACTGG 6 cut(s) 75, 247, 1195, 1787, 1918, 2033
BssECI CCNNGG 4 cut(s) 162, 216, 458, 1489
BssHII GCGCGC 1 cut(s) 2137
BssT1I CCWWGG 1 cut(s) 1489
Bst2UI CCWGG 3 cut(s) 218, 1083, 1586
Bst4CI ACNGT 3 cut(s) 395, 1544, 1772
Bst6I CTCTTC 1 cut(s) 1242
BstBI TTCGAA 1 cut(s) 2117
BstC8I GCNNGC 1 cut(s) 2139
BstDEI CTNAG 6 cut(s) 344, 739, 829, 1152, 1566, 1953
BstDSI CCRYGG 1 cut(s) 458
BstF5I GGATG 4 cut(s) 157, 1225, 1540, 2128
BstFNI CGCG 3 cut(s) 95, 2139, 2141
BstHHI GCGC 3 cut(s) 97, 2139, 2141
BstMWI GCNNNNNNNGC 7 cut(s) 365, 434, 928, 1526, 1736, 1751, 2180
BstNI CCWGG 3 cut(s) 218, 1083, 1586
BstSCI CCNGG 3 cut(s) 216, 1081, 1584
BstUI CGCG 3 cut(s) 95, 2139, 2141
BstV1I GCAGC 6 cut(s) 92, 346, 349, 352, 1105, 1717
BstV2I GAAGAC 4 cut(s) 177, 490, 873, 999
BstX2I RGATCY 5 cut(s) 900, 980, 1367, 1666, 1948
BstXI CCANNNNNNTGG 1 cut(s) 892
BstYI RGATCY 5 cut(s) 900, 980, 1367, 1666, 1948
Bsu15I ATCGAT 1 cut(s) 1165
Bsu36I CCTNAGG 1 cut(s) 1566
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 3 cut(s) 925, 1014, 1194
BsuTUI ATCGAT 1 cut(s) 1165
BtgI CCRYGG 1 cut(s) 458
BtsCI GGATG 4 cut(s) 157, 1225, 1540, 2128
BtsI GCAGTG 1 cut(s) 1503
BtsIMutI CAGTG 4 cut(s) 1503, 1780, 2026, 2209
Cac8I GCNNGC 1 cut(s) 2139
CaiI CAGNNNCTG 1 cut(s) 1952
CfoI GCGC 3 cut(s) 97, 2139, 2141
Cfr13I GGNCC 2 cut(s) 924, 1967
ClaI ATCGAT 1 cut(s) 1165
CsiI ACCWGGT 1 cut(s) 1584
Csp6I GTAC 6 cut(s) 207, 508, 604, 1682, 2071, 2112
CviAII CATG 6 cut(s) 690, 780, 919, 1055, 1521, 1655
CviQI GTAC 6 cut(s) 207, 508, 604, 1682, 2071, 2112
DdeI CTNAG 6 cut(s) 344, 739, 829, 1152, 1566, 1953
DrdI GACNNNNNNGTC 1 cut(s) 492
DseDI GACNNNNNNGTC 1 cut(s) 492
EaeI YGGCCR 2 cut(s) 1012, 1192
Eam1104I CTCTTC 1 cut(s) 1242
EarI CTCTTC 1 cut(s) 1242
Eco130I CCWWGG 1 cut(s) 1489
Eco24I GRGCYC 2 cut(s) 671, 761
Eco47I GGWCC 1 cut(s) 1967
Eco57I CTGAAG 5 cut(s) 897, 1392, 1533, 1767, 1929
Eco81I CCTNAGG 1 cut(s) 1566
Eco88I CYCGRG 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 3 cut(s) 216, 1081, 1584
EcoT14I CCWWGG 1 cut(s) 1489
EcoT38I GRGCYC 2 cut(s) 671, 761
ErhI CCWWGG 1 cut(s) 1489
FaeI CATG 6 cut(s) 693, 783, 922, 1058, 1524, 1658
FalI AAGNNNNNCTT 8 cut(s) 327, 359, 497, 529, 593, 625, 2024, 2056
FaqI GGGAC 2 cut(s) 480, 1285
FatI CATG 6 cut(s) 689, 779, 918, 1054, 1520, 1654
FauI CCCGC 6 cut(s) 40, 100, 214, 692, 782, 1409
FauNDI CATATG 2 cut(s) 1276, 1756
FbaI TGATCA 3 cut(s) 1512, 1558, 2158
Fnu4HI GCNGC 9 cut(s) 106, 360, 363, 366, 923, 1119, 1731, 1752, 2153
FokI GGATG 4 cut(s) 144, 1232, 1547, 2135
FriOI GRGCYC 2 cut(s) 671, 761
Fsp4HI GCNGC 9 cut(s) 106, 360, 363, 366, 923, 1119, 1731, 1752, 2153
FspBI CTAG 6 cut(s) 42, 897, 987, 1382, 1934, 2046
GlaI GCGC 3 cut(s) 96, 2138, 2140
GluI GCNGC 9 cut(s) 106, 360, 363, 366, 923, 1119, 1731, 1752, 2153
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 3 cut(s) 925, 1014, 1194
HapII CCGG 1 cut(s) 371
HhaI GCGC 3 cut(s) 97, 2139, 2141
Hin1II CATG 6 cut(s) 693, 783, 922, 1058, 1524, 1658
Hin6I GCGC 3 cut(s) 95, 2137, 2139
HinP1I GCGC 3 cut(s) 95, 2137, 2139
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 8 cut(s) 147, 341, 542, 638, 1284, 1527, 1675, 2038
HinfI GANTC 7 cut(s) 317, 328, 381, 702, 792, 990, 1905
HpaII CCGG 1 cut(s) 371
HphI GGTGA 4 cut(s) 222, 361, 1553, 1928
Hpy166II GTNNAC 5 cut(s) 50, 76, 261, 1830, 2080
Hpy188I TCNGA 7 cut(s) 1153, 1372, 1443, 1552, 1689, 1948, 1990
Hpy8I GTNNAC 5 cut(s) 50, 76, 261, 1830, 2080
HpyCH4III ACNGT 3 cut(s) 395, 1544, 1772
HpyCH4V TGCA 7 cut(s) 585, 1054, 1311, 1360, 1452, 1627, 1825
HpyF10VI GCNNNNNNNGC 7 cut(s) 365, 434, 928, 1526, 1736, 1751, 2180
HpyF3I CTNAG 6 cut(s) 344, 739, 829, 1152, 1566, 1953
Hsp92II CATG 6 cut(s) 693, 783, 922, 1058, 1524, 1658
HspAI GCGC 3 cut(s) 95, 2137, 2139
Ksp22I TGATCA 3 cut(s) 1512, 1558, 2158
LmnI GCTCC 2 cut(s) 373, 1062
Lsp1109I GCAGC 6 cut(s) 92, 346, 349, 352, 1105, 1717
LweI GCATC 2 cut(s) 1105, 1839
MabI ACCWGGT 1 cut(s) 1584
MaeI CTAG 6 cut(s) 42, 897, 987, 1382, 1934, 2046
MaeIII GTNAC 4 cut(s) 1723, 1816, 2014, 2204
MflI RGATCY 5 cut(s) 900, 980, 1367, 1666, 1948
MhlI GDGCHC 6 cut(s) 671, 740, 761, 830, 1067, 1770
MlsI TGGCCA 2 cut(s) 1014, 1194
MluNI TGGCCA 2 cut(s) 1014, 1194
MlyI GAGTC 2 cut(s) 337, 999
MmeI TCCRAC 4 cut(s) 236, 368, 909, 1140
Mox20I TGGCCA 2 cut(s) 1014, 1194
MscI TGGCCA 2 cut(s) 1014, 1194
MseI TTAA 5 cut(s) 375, 1170, 1410, 1715, 1962
MslI CAYNNNNRTG 1 cut(s) 1632
Msp20I TGGCCA 2 cut(s) 1014, 1194
MspA1I CMGCKG 2 cut(s) 105, 1730
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 3 cut(s) 218, 1083, 1586
MvaI CCWGG 3 cut(s) 218, 1083, 1586
MvnI CGCG 3 cut(s) 95, 2139, 2141
MwoI GCNNNNNNNGC 7 cut(s) 365, 434, 928, 1526, 1736, 1751, 2180
NdeI CATATG 2 cut(s) 1276, 1756
NlaIII CATG 6 cut(s) 693, 783, 922, 1058, 1524, 1658
NlaIV GGNNCC 2 cut(s) 392, 902
NmuCI GTSAC 1 cut(s) 2204
NspV TTCGAA 1 cut(s) 2117
PauI GCGCGC 1 cut(s) 2137
PfeI GAWTC 5 cut(s) 317, 381, 702, 792, 1905
PkrI GCNGC 9 cut(s) 107, 361, 364, 367, 924, 1120, 1732, 1753, 2154
PleI GAGTC 2 cut(s) 336, 998
PpsI GAGTC 2 cut(s) 336, 998
PshBI ATTAAT 1 cut(s) 1715
Psp6I CCWGG 3 cut(s) 216, 1081, 1584
PspGI CCWGG 3 cut(s) 216, 1081, 1584
PspN4I GGNNCC 2 cut(s) 392, 902
PspPI GGNCC 2 cut(s) 924, 1967
PstNI CAGNNNCTG 1 cut(s) 1952
PsuI RGATCY 5 cut(s) 900, 980, 1367, 1666, 1948
PteI GCGCGC 1 cut(s) 2137
PvuII CAGCTG 1 cut(s) 1730
RsaI GTAC 6 cut(s) 208, 509, 605, 1683, 2072, 2113
RsaNI GTAC 6 cut(s) 207, 508, 604, 1682, 2071, 2112
RseI CAYNNNNRTG 1 cut(s) 1632
SaqAI TTAA 5 cut(s) 375, 1170, 1410, 1715, 1962
SatI GCNGC 9 cut(s) 106, 360, 363, 366, 923, 1119, 1731, 1752, 2153
Sau96I GGNCC 2 cut(s) 924, 1967
SchI GAGTC 2 cut(s) 337, 999
ScrFI CCNGG 3 cut(s) 218, 1083, 1586
SduI GDGCHC 6 cut(s) 671, 740, 761, 830, 1067, 1770
SexAI ACCWGGT 1 cut(s) 1584
SfaNI GCATC 2 cut(s) 1105, 1839
SfuI TTCGAA 1 cut(s) 2117
SinI GGWCC 1 cut(s) 1967
SmiMI CAYNNNNRTG 1 cut(s) 1632
SmlI CTYRAG 2 cut(s) 191, 1417
SmoI CTYRAG 2 cut(s) 191, 1417
SspI AATATT 1 cut(s) 1235
SspMI CTAG 6 cut(s) 42, 897, 987, 1382, 1934, 2046
StyD4I CCNGG 3 cut(s) 216, 1081, 1584
StyI CCWWGG 1 cut(s) 1489
TaaI ACNGT 3 cut(s) 395, 1544, 1772
TaqI TCGA 6 cut(s) 320, 326, 331, 1041, 1165, 2117
TaqII GACCGA 1 cut(s) 20
TatI WGTACW 5 cut(s) 206, 507, 603, 1681, 2070
TauI GCSGC 3 cut(s) 925, 1754, 2155
TfiI GAWTC 5 cut(s) 317, 381, 702, 792, 1905
Tru1I TTAA 5 cut(s) 375, 1170, 1410, 1715, 1962
Tru9I TTAA 5 cut(s) 375, 1170, 1410, 1715, 1962
TscAI CASTG 4 cut(s) 1510, 1787, 2033, 2209
TseFI GTSAC 1 cut(s) 2204
TseI GCWGC 6 cut(s) 105, 359, 362, 365, 1118, 1730
Tsp45I GTSAC 1 cut(s) 2204
TspDTI ATGAA 7 cut(s) 311, 564, 660, 1071, 1551, 1773, 2021
TspGWI ACGGA 1 cut(s) 475
TspRI CASTG 4 cut(s) 1510, 1787, 2033, 2209
VpaK11BI GGWCC 1 cut(s) 1967
VspI ATTAAT 1 cut(s) 1715
XapI RAATTY 4 cut(s) 226, 322, 1017, 1760
XbaI TCTAGA 2 cut(s) 986, 1933
XspI CTAG 6 cut(s) 42, 897, 987, 1382, 1934, 2046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.