Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009520

Physical Location & Seq

Genomic Coordinates Forward (+)

6978782 .. 6983680

Gene Structure 4899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG086900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

ATGTACTCCAACCCAGGCGGGAAATTCACCGATCAAGAACACCCAGTTGAGGAGGTTTACAGAAGAAGAAAACCCAGAAAGCCCACTCCAGATGAAGAACCCTTAAGGGAATCGAATTCGAGTCGAAAAGAGAAGCTTAGGGTGAGTTTGGCTGCTGCTGTTCCGGTTAAGCGAATCAGTTGGAACCGTTTTCTTTCCACAAGAGGGAGGACAAGTATTGCTGTTGGTGCTTGTTTGGACTATCAGCCTCCACGGAAGAAGGCTAAAAGGAAAGGAAGACCTCCTCGTCCCAAAAGTAAGTACAACTTTGAAAAGGAACGAGCTTACTTTGAGAAGCTTGATGAAGAAGAATTGATAGAGGAGAGCCCCTCGCCCATACCCCGCACATGGGTTGCTGGAATCCCAAAGGGGAATGTTGAAATACCCAAGTTGTGCTCAGCATTAGAGAAATGGTTATTATCCAAGAAGTTCAATTTCGGTTTAGGGTCTTCCAACACATTGGCTAGGATCCTACAATCTTCAGCCATGCGGCCCTCGCCCATTGGTGGTATCAATTTTGAACCTTCAAGTTTGAAAACCCCAGAAAGATCTTCTAGAGTCAATTCTCGCTTGTCTTCTGGCCAAATTGGTTTTGATTTGAGTTTGCTCGATGGAAGTGTGCATGAAAGGAGCGCCCCCAAATCACTTCCTGGTGTGGGCAATGAGGATTGTGAAGATATAGATGCTGCTGTAAAAGAACTCTCTTTGGTATCAACTTCTGAGGAGTTGGATCGATTTAATGCTCTGTTAGAAGTTTGTGGCCAGTCATCTCCCTCAAAATTACAGGATGTATTTTCCAAATATTGTGATCCAGAAGAGATTGAAAAAGTCGGCGAAGGGACATATGGAGAAGCTTTCAAGGTTGGCAACTGCGTTTGCAAAATAGTTCCTATTGATGGCAACTTACCAGTGAATGGGGTTGAAGTGCAAAAGAGATCTGAAGAATTGCTAGAGGAGGTCGTGCTTTCCCGCACTCTTAATTACTTGAGAGGAAACGATGATAATGTTCAGAATGTATGCACGACATTTATAGAAACAAAAGATTTGAGGGTGTGCCAAGGCTCTTATGACGCTGCCTTGATCAAAGCATGGGAATCTTGGGATGAAAACCGTCCTTCAGAAAATGATCACCCTGAGGCGTTTCCAGAGAACCAGTTCTATGTCGTGTTTGTTTTAGAGCATGGTGGCAAAGATCTGGAAAGCTTTGTACTTCTGAACTTTGACGAGGCAAGGAGTTTATTAATACAGGTTACAGCTGCCCTTGCTGTGGCTGAAGCGGCATATGAATTTGAGCACCGTGATCTCCACTGGGGAAACATACTTTTGAGAAGGAGTGGTTCAGTTACAATGCAGTTCACTCTTGAAGGAAAGCAGATGCTCATACGCACATTTGGATTAGCAATATCAATCATTGATTTCACTCTTTCAAGAATCAATACTGGCGAAGCCATACTCTTTCTAGACCTATCTTCAGATCCTGAGCTTTTTAATGGTCCAAAAAGCGATAAACAATCAGAAACTTACAGGAAAATGAAGAAGGTAACACAAGACCACTGGAAGGAAAGCTTCCCTAGAACAAATGTGTTGTGGTTGCTGTACTTGGTGGACATATTACTCCTAAACAAAGCATTTGTAAGTATCTCTTTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0023052 GO:0035173 GO:0035184 GO:0035402 GO:0035405 GO:0035407 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0065007 GO:0071704 GO:0071840 GO:0072354 GO:0072355 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Haspin_kinase

Protein Analysis

563

Amino Acids

63.49

Weight (kDa)

6.01

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Haspin_kinase	PF12330	261 - 555	1.9e-50	Haspin like kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09450
fragaria_vesca	FvH4_6g08390 FvH4_6g08390 FvH4_6g08390 FvH4_6g08390 FvH4_6g08390 FvH4_6g08390 FvH4_6g08390 FvH4_6g08390
malus_domestica	MD04G1187300.v1.1
prunus_persica	Prupe.6G305800_v2.0.a1
pyrus_communis	pycom04g16540
rosa_chinensis	RchiOBHm_Chr3g0458361
rosa_laevigata	RLG00000025166
rosa_multiflora	Rmu_sc0007338.1_g000011
rosa_roxburghii	Rroxscaffold_6G00421150
rosa_rugosa	Rorug03G0026000
rosa_samantha	Rh3AG086900 Rh3BG089700 Rh3CG090100 Rh3DG090700
rosa_wichuraiana	Rw3G007380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	953
AciI	CCGC	5 cut(s)	18, 382, 529, 1009, 1316
AclWI	GGATC	5 cut(s)	502, 515, 777, 842, 1508
AcoI	YGGCCR	2 cut(s)	619, 799
AcsI	RAATTY	3 cut(s)	23, 115, 1325
AcuI	CTGAAG	5 cut(s)	504, 999, 1140, 1332, 1494
AfaI	GTAC	4 cut(s)	5, 302, 1248, 1637
AflII	CTTAAG	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	13, 688
AluBI	AGCT	8 cut(s)	136, 323, 337, 893, 1242, 1295, 1522, 1605
AluI	AGCT	8 cut(s)	136, 323, 337, 893, 1242, 1295, 1522, 1605
Alw21I	GWGCWC	2 cut(s)	437, 1335
AlwI	GGATC	5 cut(s)	502, 515, 777, 842, 1508
AlwNI	CAGNNNCTG	1 cut(s)	1517
AoxI	GGCC	3 cut(s)	530, 619, 799
ApeKI	GCWGC	5 cut(s)	152, 155, 725, 1112, 1295
ApoI	RAATTY	3 cut(s)	23, 115, 1325
AseI	ATTAAT	1 cut(s)	1280
Asp700I	GAANNNNTTC	1 cut(s)	1193
AspLEI	GCGC	1 cut(s)	674
AspS9I	GGNCC	2 cut(s)	531, 1532
AsuHPI	GGTGA	3 cut(s)	19, 154, 1160
AvaII	GGWCC	1 cut(s)	1532
AxyI	CCTNAGG	1 cut(s)	1173
BalI	TGGCCA	2 cut(s)	621, 801
BamHI	GGATCC	1 cut(s)	507
BanII	GRGCYC	1 cut(s)	368
BbsI	GAAGAC	3 cut(s)	283, 480, 606
Bbv12I	GWGCWC	2 cut(s)	437, 1335
BbvI	GCAGC	5 cut(s)	139, 142, 712, 1099, 1282
BccI	CCATC	2 cut(s)	644, 929
BciT130I	CCWGG	2 cut(s)	15, 690
BclI	TGATCA	2 cut(s)	1119, 1165
BfaI	CTAG	5 cut(s)	504, 594, 989, 1499, 1611
BfoI	RGCGCY	1 cut(s)	675
BfrI	CTTAAG	1 cut(s)	103
BglII	AGATCT	3 cut(s)	587, 974, 1231
BisI	GCNGC	7 cut(s)	153, 156, 530, 726, 1113, 1296, 1317
BlpI	GCTNAGC	1 cut(s)	436
BlsI	GCNGC	7 cut(s)	154, 157, 531, 727, 1114, 1297, 1318
Bme1390I	CCNGG	2 cut(s)	15, 690
Bme18I	GGWCC	1 cut(s)	1532
BmgT120I	GGNCC	2 cut(s)	531, 1532
BmiI	GGNNCC	2 cut(s)	185, 509
BmrFI	CCNGG	2 cut(s)	15, 690
BmrI	ACTGGG	2 cut(s)	38, 1357
BmsI	GCATC	2 cut(s)	712, 1404
BmuI	ACTGGG	2 cut(s)	38, 1357
BpiI	GAAGAC	3 cut(s)	283, 480, 606
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	2 cut(s)	137, 1518
Bpu1102I	GCTNAGC	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	1045
Bsa29I	ATCGAT	1 cut(s)	772
BsaJI	CCNNGG	3 cut(s)	13, 251, 1096
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bse1I	ACTGG	7 cut(s)	44, 802, 947, 1192, 1352, 1483, 1598
Bse21I	CCTNAGG	1 cut(s)	1173
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	2 cut(s)	15, 690
BseCI	ATCGAT	1 cut(s)	772
BseDI	CCNNGG	3 cut(s)	13, 251, 1096
BseGI	GGATG	2 cut(s)	832, 1147
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	4 cut(s)	450, 750, 1164, 1509
BseNI	ACTGG	7 cut(s)	44, 802, 947, 1192, 1352, 1483, 1598
BseRI	GAGGAG	5 cut(s)	65, 273, 374, 776, 1007
BseXI	GCAGC	5 cut(s)	139, 142, 712, 1099, 1282
BshFI	GGCC	3 cut(s)	532, 621, 801
BshVI	ATCGAT	1 cut(s)	772
BsiHKAI	GWGCWC	2 cut(s)	437, 1335
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	2 cut(s)	273, 892
BsmFI	GGGAC	2 cut(s)	273, 892
BsnI	GGCC	3 cut(s)	532, 621, 801
Bsp1286I	GDGCHC	3 cut(s)	368, 437, 1335
Bsp1720I	GCTNAGC	1 cut(s)	436
BspACI	CCGC	5 cut(s)	18, 382, 529, 1009, 1316
BspANI	GGCC	3 cut(s)	532, 621, 801
BspCNI	CTCAG	4 cut(s)	449, 751, 1165, 1510
BspDI	ATCGAT	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	185, 509
BspPI	GGATC	5 cut(s)	502, 515, 777, 842, 1508
BspTI	CTTAAG	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	706
BsrI	ACTGG	7 cut(s)	44, 802, 947, 1192, 1352, 1483, 1598
BssECI	CCNNGG	3 cut(s)	13, 251, 1096
BssT1I	CCWWGG	1 cut(s)	1096
Bst2UI	CCWGG	2 cut(s)	15, 690
Bst4CI	ACNGT	3 cut(s)	188, 1151, 1337
Bst6I	CTCTTC	1 cut(s)	849
BstAFI	CTTAAG	1 cut(s)	103
BstDEI	CTNAG	5 cut(s)	137, 436, 759, 1173, 1518
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	832, 1147
BstH2I	RGCGCY	1 cut(s)	675
BstHHI	GCGC	1 cut(s)	674
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 535, 1301, 1316
BstNI	CCWGG	2 cut(s)	15, 690
BstSCI	CCNGG	2 cut(s)	13, 688
BstV1I	GCAGC	5 cut(s)	139, 142, 712, 1099, 1282
BstV2I	GAAGAC	3 cut(s)	283, 480, 606
BstX2I	RGATCY	5 cut(s)	507, 587, 974, 1231, 1513
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	5 cut(s)	507, 587, 974, 1231, 1513
Bsu15I	ATCGAT	1 cut(s)	772
Bsu36I	CCTNAGG	1 cut(s)	1173
BsuRI	GGCC	3 cut(s)	532, 621, 801
BsuTUI	ATCGAT	1 cut(s)	772
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	832, 1147
BtsIMutI	CAGTG	3 cut(s)	954, 1345, 1591
CaiI	CAGNNNCTG	1 cut(s)	1517
CfoI	GCGC	1 cut(s)	674
Cfr13I	GGNCC	2 cut(s)	531, 1532
ClaI	ATCGAT	1 cut(s)	772
CseI	GACGC	1 cut(s)	1118
Csp6I	GTAC	4 cut(s)	4, 301, 1247, 1636
CviAII	CATG	5 cut(s)	387, 526, 662, 1128, 1220
CviQI	GTAC	4 cut(s)	4, 301, 1247, 1636
DdeI	CTNAG	5 cut(s)	137, 436, 759, 1173, 1518
DrdI	GACNNNNNNGTC	1 cut(s)	285
DseDI	GACNNNNNNGTC	1 cut(s)	285
EaeI	YGGCCR	2 cut(s)	619, 799
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	1096
Eco24I	GRGCYC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	1532
Eco57I	CTGAAG	5 cut(s)	504, 999, 1140, 1332, 1494
Eco81I	CCTNAGG	1 cut(s)	1173
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	13, 688
EcoT14I	CCWWGG	1 cut(s)	1096
EcoT38I	GRGCYC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	1096
FaeI	CATG	5 cut(s)	390, 529, 665, 1131, 1223
FalI	AAGNNNNNCTT	7 cut(s)	120, 152, 290, 322, 1589, 1621, 1666
FaqI	GGGAC	2 cut(s)	273, 892
FatI	CATG	5 cut(s)	386, 525, 661, 1127, 1219
FauI	CCCGC	3 cut(s)	11, 389, 1016
FauNDI	CATATG	2 cut(s)	883, 1321
FbaI	TGATCA	2 cut(s)	1119, 1165
Fnu4HI	GCNGC	7 cut(s)	153, 156, 530, 726, 1113, 1296, 1317
FokI	GGATG	2 cut(s)	839, 1154
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	7 cut(s)	153, 156, 530, 726, 1113, 1296, 1317
FspBI	CTAG	5 cut(s)	504, 594, 989, 1499, 1611
GlaI	GCGC	1 cut(s)	673
GluI	GCNGC	7 cut(s)	153, 156, 530, 726, 1113, 1296, 1317
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	675
HaeIII	GGCC	3 cut(s)	532, 621, 801
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	1118
HhaI	GCGC	1 cut(s)	674
Hin1II	CATG	5 cut(s)	390, 529, 665, 1131, 1223
Hin6I	GCGC	1 cut(s)	672
HinP1I	GCGC	1 cut(s)	672
HindIII	AAGCTT	5 cut(s)	134, 335, 891, 1240, 1603
HinfI	GANTC	7 cut(s)	110, 121, 174, 399, 597, 1133, 1470
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	3 cut(s)	19, 154, 1160
Hpy166II	GTNNAC	3 cut(s)	58, 1395, 1645
Hpy188I	TCNGA	7 cut(s)	760, 979, 1050, 1159, 1254, 1513, 1555
Hpy8I	GTNNAC	3 cut(s)	58, 1395, 1645
HpyAV	CCTTC	8 cut(s)	253, 573, 869, 1164, 1362, 1397, 1570, 1591
HpyCH4III	ACNGT	3 cut(s)	188, 1151, 1337
HpyCH4V	TGCA	5 cut(s)	661, 918, 967, 1059, 1390
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 535, 1301, 1316
HpyF3I	CTNAG	5 cut(s)	137, 436, 759, 1173, 1518
Hsp92II	CATG	5 cut(s)	390, 529, 665, 1131, 1223
HspAI	GCGC	1 cut(s)	672
Ksp22I	TGATCA	2 cut(s)	1119, 1165
LmnI	GCTCC	1 cut(s)	669
Lsp1109I	GCAGC	5 cut(s)	139, 142, 712, 1099, 1282
LweI	GCATC	2 cut(s)	712, 1404
MaeI	CTAG	5 cut(s)	504, 594, 989, 1499, 1611
MaeIII	GTNAC	3 cut(s)	1288, 1381, 1579
MflI	RGATCY	5 cut(s)	507, 587, 974, 1231, 1513
MhlI	GDGCHC	3 cut(s)	368, 437, 1335
MlsI	TGGCCA	2 cut(s)	621, 801
MluNI	TGGCCA	2 cut(s)	621, 801
MlyI	GAGTC	2 cut(s)	130, 606
MmeI	TCCRAC	4 cut(s)	33, 161, 516, 747
Mox20I	TGGCCA	2 cut(s)	621, 801
MroXI	GAANNNNTTC	1 cut(s)	1193
MscI	TGGCCA	2 cut(s)	621, 801
MseI	TTAA	7 cut(s)	104, 168, 777, 1017, 1280, 1527, 1686
Msp20I	TGGCCA	2 cut(s)	621, 801
MspA1I	CMGCKG	1 cut(s)	1295
MspCI	CTTAAG	1 cut(s)	103
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	15, 690
MvaI	CCWGG	2 cut(s)	15, 690
MwoI	GCNNNNNNNGC	4 cut(s)	227, 535, 1301, 1316
NdeI	CATATG	2 cut(s)	883, 1321
NlaIII	CATG	5 cut(s)	390, 529, 665, 1131, 1223
NlaIV	GGNNCC	2 cut(s)	185, 509
PdmI	GAANNNNTTC	1 cut(s)	1193
PfeI	GAWTC	5 cut(s)	110, 174, 399, 1133, 1470
PflMI	CCANNNNNTGG	1 cut(s)	953
PkrI	GCNGC	7 cut(s)	154, 157, 531, 727, 1114, 1297, 1318
PleI	GAGTC	2 cut(s)	129, 605
PpsI	GAGTC	2 cut(s)	129, 605
PshBI	ATTAAT	1 cut(s)	1280
Psp6I	CCWGG	2 cut(s)	13, 688
PspGI	CCWGG	2 cut(s)	13, 688
PspN4I	GGNNCC	2 cut(s)	185, 509
PspPI	GGNCC	2 cut(s)	531, 1532
PstNI	CAGNNNCTG	1 cut(s)	1517
PsuI	RGATCY	5 cut(s)	507, 587, 974, 1231, 1513
PvuII	CAGCTG	1 cut(s)	1295
RsaI	GTAC	4 cut(s)	5, 302, 1248, 1637
RsaNI	GTAC	4 cut(s)	4, 301, 1247, 1636
SaqAI	TTAA	7 cut(s)	104, 168, 777, 1017, 1280, 1527, 1686
SatI	GCNGC	7 cut(s)	153, 156, 530, 726, 1113, 1296, 1317
Sau96I	GGNCC	2 cut(s)	531, 1532
SchI	GAGTC	2 cut(s)	130, 606
ScrFI	CCNGG	2 cut(s)	15, 690
SduI	GDGCHC	3 cut(s)	368, 437, 1335
SfaNI	GCATC	2 cut(s)	712, 1404
SinI	GGWCC	1 cut(s)	1532
SmlI	CTYRAG	2 cut(s)	103, 1024
SmoI	CTYRAG	2 cut(s)	103, 1024
SsiI	CCGC	5 cut(s)	18, 382, 529, 1009, 1316
SspI	AATATT	1 cut(s)	842
SspMI	CTAG	5 cut(s)	504, 594, 989, 1499, 1611
StyD4I	CCNGG	2 cut(s)	13, 688
StyI	CCWWGG	1 cut(s)	1096
TaaI	ACNGT	3 cut(s)	188, 1151, 1337
TaqI	TCGA	5 cut(s)	113, 119, 124, 648, 772
TatI	WGTACW	4 cut(s)	3, 300, 1246, 1635
TauI	GCSGC	2 cut(s)	532, 1319
TfiI	GAWTC	5 cut(s)	110, 174, 399, 1133, 1470
Tru1I	TTAA	7 cut(s)	104, 168, 777, 1017, 1280, 1527, 1686
Tru9I	TTAA	7 cut(s)	104, 168, 777, 1017, 1280, 1527, 1686
TscAI	CASTG	3 cut(s)	954, 1352, 1598
TseI	GCWGC	5 cut(s)	152, 155, 725, 1112, 1295
TspDTI	ATGAA	6 cut(s)	108, 357, 678, 1158, 1338, 1586
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	3 cut(s)	954, 1352, 1598
Van91I	CCANNNNNTGG	1 cut(s)	953
Vha464I	CTTAAG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	1532
VspI	ATTAAT	1 cut(s)	1280
XapI	RAATTY	3 cut(s)	23, 115, 1325
XbaI	TCTAGA	2 cut(s)	593, 1498
XmnI	GAANNNNTTC	1 cut(s)	1193
XspI	CTAG	5 cut(s)	504, 594, 989, 1499, 1611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.