Rroxscaffold_6G00421150

Domain of unknown function

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
42366091 .. 42370358
4268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421150.1

Sequence Viewer

Length: 1794 bp
ATGTACTCCAACTCAGGCGGGAAATTCACCGATCAAGAACACCCAGTTGAGGAGGTTTACAGAAGAAGAAAACCCAGAAAGCCCACTCCAGATGAAGAACCCTTAAGGGAATCGAGTTCGAGTCGAAAAGAGAAGCTTAGGGTGAGTTTGGCTGCTGCTGCTCCGGTTAAGCGAATCAGTTGGAACCGTTTTCTTTCCACAAGAGGGAGGACAAGTATTGCTGTTGGTGCTTGCTTGGACTATCAGCCTCCTCAGAAGAAGGCTAAAAGGAAAGGAAGACCTCCTCGTCCCAAAAGTAAGTACAACTTTGAAAAGGAACGAGCTTACTTTGAGAAGCTTGATGAAGAAGAATTGATAGAGGAGAGCCCCTCGCCCATACCCCGCACATGGGTTGCTGGAATCCCAAAAGGGAATGTTGAAATACCCAAGTTGTGCTCAGCATTAGAGAAATGGTTATTATCCAAGAAATTGAATTTCGGTTTAGGGTCTTCCAACACATTGGCTAGGATCCTACAATCTTCAGCCATGCGGCCCTCGCCCATTGGTGGTATCAATTTTGAACCTTCAAGTTTGAAAACCCCAGAAAGATCTTCTAGAGTCAATTCTCGCTTGTCTTCCGACCAAATTAGTTTTGATTTGAGTTTGCTCGATGGAAGTGTGCATGAAAGGAGCACCCCCAAATCACTTCCTGGTGTGGACAATGAGAATTGTGAAGATATAGATGCTGCTGTAAAAGAACTCTCTTTGGTATCAACTTCTGAGCAGTTGGATCGATTTAATGCTCTGTTAGAAGTTTGTGGCCAGTCATGTCCCTCAAAATTACAGGATGTATTTTCCAAATATTGTGATCCAGAAGAGATTGAAAAAGTCGGCGAAGGGACATATGGAGAAGCTTTCAAGGTTGGCAACTGCGTTTGCAAAGTAGTTCCTATTGATGGCAACTTACGAGTGAATGGGGAAGTGCAAAAGAGATCTGAGGAATTGCTAGAGGAGGTTGTGCTTTCCCGCACTCTTAATTACTTGAGAGGAAACGATGATAATGTTCAGAATGTATGCACAACATTTATAGAAACAAAAGATTTGAGGGTGTGCCAAGGCTCTTATGACGCTGCCTTGATCAAAGCATGGGAAGCTTGGGATGAAAACCATGGTTCAGAAAATGATCACCCTGAGGCGTTTCCAGAGAACCAGTTCTATGTCGTGTTTGTTTTAGAGCATGGTGGCAAAGATCTGGAAAGCTTTGTACTTCTGAACTTTGACGAGGCAAGGAGTTTATTAGTACAGGTTACAGTTGCCCTTGCTGTGGCTGAAGCAGCATATGAATTTGAGCACCGTGATCTCCACTGGGGAAACATACTTTTGAGTAGGAGTGGTTCAGTTACAATGCAGTTCACTCTTGAAGGAAAGCAGATGCTCATACGCACATTTGGATTAGCAGTATCAATCATTGATTTCACTCTTTCAAGAATCAATACTGGCGAAGCCATACTCTTTCTAGACCTATCTTCAGATCCTGAGCTTTTTAATGGTCCAAAAAGAGATAAACAATCAGAAACTTACCGGAAAATGAAGAAGGTAACACAAGACCACTGGAAGGAAAGCTTCCCTAGGACAAATGTGTTGTGGTTGCTGTACTTGGTGGACATATTACTCCTAAACAAATCATTTGATCGTACTTCGAAGGATGAGAGAGATTTGCGCTCGTTGAAGAAGCGGCTTGATCAATATCAGTCAGCAAGAGAAGCACTTTTTGATCCTTCTTTCAGAGACTTGTTTGTTTGTTGTGATAGTTGA

Protein Analysis

597

Amino Acids

67.69

Weight (kDa)

5.97

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Haspin_kinase PF12330 260 - 585 3.1e-53 Haspin like kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 285
AciI CCGC 5 cut(s) 18, 382, 529, 1006, 1714
AclWI GGATC 6 cut(s) 502, 515, 777, 842, 1505, 1748
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 3 cut(s) 23, 472, 1322
AcuI CTGAAG 3 cut(s) 504, 1329, 1491
AfaI GTAC 6 cut(s) 5, 302, 1245, 1281, 1634, 1675
AfiI CCNNNNNNNGG 8 cut(s) 49, 204, 387, 388, 545, 935, 1303, 1594
AflII CTTAAG 1 cut(s) 103
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 8 cut(s) 136, 323, 337, 893, 1133, 1239, 1519, 1602
AluI AGCT 8 cut(s) 136, 323, 337, 893, 1133, 1239, 1519, 1602
Alw21I GWGCWC 3 cut(s) 437, 674, 1332
Alw26I GTCTC 1 cut(s) 1761
AlwI GGATC 6 cut(s) 502, 515, 777, 842, 1505, 1748
AlwNI CAGNNNCTG 1 cut(s) 1514
AoxI GGCC 2 cut(s) 530, 799
ApeKI GCWGC 6 cut(s) 152, 155, 158, 725, 1109, 1313
ApoI RAATTY 3 cut(s) 23, 472, 1322
Asp700I GAANNNNTTC 1 cut(s) 1190
AspA2I CCTAGG 1 cut(s) 1607
AspLEI GCGC 1 cut(s) 1701
AspS9I GGNCC 2 cut(s) 531, 1529
AsuHPI GGTGA 3 cut(s) 19, 154, 1157
AsuII TTCGAA 1 cut(s) 1679
AvaII GGWCC 1 cut(s) 1529
AvrII CCTAGG 1 cut(s) 1607
AxyI CCTNAGG 1 cut(s) 1170
BalI TGGCCA 1 cut(s) 801
BamHI GGATCC 1 cut(s) 507
BanII GRGCYC 1 cut(s) 368
BbsI GAAGAC 3 cut(s) 283, 480, 606
Bbv12I GWGCWC 3 cut(s) 437, 674, 1332
BbvI GCAGC 6 cut(s) 139, 142, 145, 712, 1096, 1325
BccI CCATC 2 cut(s) 644, 929
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 1 cut(s) 690
BclI TGATCA 3 cut(s) 1116, 1162, 1720
BcoDI GTCTC 1 cut(s) 1761
BfaI CTAG 5 cut(s) 504, 594, 986, 1496, 1608
BfrI CTTAAG 1 cut(s) 103
BglII AGATCT 3 cut(s) 587, 971, 1228
BisI GCNGC 8 cut(s) 153, 156, 159, 530, 726, 1110, 1314, 1715
BlnI CCTAGG 1 cut(s) 1607
BlpI GCTNAGC 1 cut(s) 436
BlsI GCNGC 8 cut(s) 154, 157, 160, 531, 727, 1111, 1315, 1716
Bme1390I CCNGG 1 cut(s) 690
Bme18I GGWCC 1 cut(s) 1529
BmgT120I GGNCC 2 cut(s) 531, 1529
BmiI GGNNCC 2 cut(s) 185, 509
BmrFI CCNGG 1 cut(s) 690
BmrI ACTGGG 2 cut(s) 38, 1354
BmsI GCATC 2 cut(s) 712, 1401
BmuI ACTGGG 2 cut(s) 38, 1354
BpiI GAAGAC 3 cut(s) 283, 480, 606
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 2 cut(s) 137, 1515
Bpu1102I GCTNAGC 1 cut(s) 436
Bpu14I TTCGAA 1 cut(s) 1679
BpuEI CTTGAG 1 cut(s) 1042
Bsa29I ATCGAT 1 cut(s) 772
BsaBI GATNNNNATC 1 cut(s) 1725
BsaJI CCNNGG 3 cut(s) 1093, 1147, 1607
BsaWI WCCGGW 2 cut(s) 163, 1560
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 8 cut(s) 49, 204, 387, 388, 545, 935, 1303, 1594
Bse1I ACTGG 6 cut(s) 44, 802, 1189, 1349, 1480, 1595
Bse21I CCTNAGG 1 cut(s) 1170
Bse8I GATNNNNATC 1 cut(s) 1725
BseBI CCWGG 1 cut(s) 690
BseCI ATCGAT 1 cut(s) 772
BseDI CCNNGG 3 cut(s) 1093, 1147, 1607
BseGI GGATG 3 cut(s) 832, 1144, 1690
BseJI GATNNNNATC 1 cut(s) 1725
BseLI CCNNNNNNNGG 8 cut(s) 49, 204, 387, 388, 545, 935, 1303, 1594
BseMII CTCAG 7 cut(s) 27, 266, 450, 750, 966, 1161, 1506
BseNI ACTGG 6 cut(s) 44, 802, 1189, 1349, 1480, 1595
BseRI GAGGAG 5 cut(s) 65, 240, 273, 374, 1004
BseXI GCAGC 6 cut(s) 139, 142, 145, 712, 1096, 1325
BshFI GGCC 2 cut(s) 532, 801
BshVI ATCGAT 1 cut(s) 772
BsiHKAI GWGCWC 3 cut(s) 437, 674, 1332
BsiSI CCGG 2 cut(s) 164, 1561
BslFI GGGAC 3 cut(s) 273, 795, 892
BslI CCNNNNNNNGG 8 cut(s) 49, 204, 387, 388, 545, 935, 1303, 1594
BsmAI GTCTC 1 cut(s) 1761
BsmFI GGGAC 3 cut(s) 273, 795, 892
BsnI GGCC 2 cut(s) 532, 801
Bsp119I TTCGAA 1 cut(s) 1679
Bsp1286I GDGCHC 4 cut(s) 368, 437, 674, 1332
Bsp1720I GCTNAGC 1 cut(s) 436
Bsp19I CCATGG 1 cut(s) 1147
BspACI CCGC 5 cut(s) 18, 382, 529, 1006, 1714
BspANI GGCC 2 cut(s) 532, 801
BspCNI CTCAG 7 cut(s) 26, 265, 449, 751, 967, 1162, 1507
BspDI ATCGAT 1 cut(s) 772
BspLI GGNNCC 2 cut(s) 185, 509
BspPI GGATC 6 cut(s) 502, 515, 777, 842, 1505, 1748
BspT104I TTCGAA 1 cut(s) 1679
BspTI CTTAAG 1 cut(s) 103
BsrI ACTGG 6 cut(s) 44, 802, 1189, 1349, 1480, 1595
BssECI CCNNGG 3 cut(s) 1093, 1147, 1607
BssT1I CCWWGG 3 cut(s) 1093, 1147, 1607
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 3 cut(s) 188, 1291, 1334
Bst6I CTCTTC 1 cut(s) 849
BstAFI CTTAAG 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 1679
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 8 cut(s) 13, 137, 252, 436, 759, 975, 1170, 1515
BstDSI CCRYGG 1 cut(s) 1147
BstF5I GGATG 3 cut(s) 832, 1144, 1690
BstHHI GCGC 1 cut(s) 1701
BstMAI GTCTC 1 cut(s) 1761
BstMWI GCNNNNNNNGC 6 cut(s) 158, 227, 535, 1130, 1313, 1742
BstNI CCWGG 1 cut(s) 690
BstSCI CCNGG 1 cut(s) 688
BstV1I GCAGC 6 cut(s) 139, 142, 145, 712, 1096, 1325
BstV2I GAAGAC 3 cut(s) 283, 480, 606
BstX2I RGATCY 5 cut(s) 507, 587, 971, 1228, 1510
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 5 cut(s) 507, 587, 971, 1228, 1510
Bsu15I ATCGAT 1 cut(s) 772
Bsu36I CCTNAGG 1 cut(s) 1170
BsuRI GGCC 2 cut(s) 532, 801
BsuTUI ATCGAT 1 cut(s) 772
BtgI CCRYGG 1 cut(s) 1147
BtsCI GGATG 3 cut(s) 832, 1144, 1690
BtsIMutI CAGTG 2 cut(s) 1342, 1588
Cac8I GCNNGC 1 cut(s) 232
CaiI CAGNNNCTG 1 cut(s) 1514
CfoI GCGC 1 cut(s) 1701
Cfr13I GGNCC 2 cut(s) 531, 1529
ClaI ATCGAT 1 cut(s) 772
CseI GACGC 1 cut(s) 1115
Csp6I GTAC 6 cut(s) 4, 301, 1244, 1280, 1633, 1674
CviAII CATG 7 cut(s) 387, 526, 662, 807, 1125, 1148, 1217
CviQI GTAC 6 cut(s) 4, 301, 1244, 1280, 1633, 1674
DdeI CTNAG 8 cut(s) 13, 137, 252, 436, 759, 975, 1170, 1515
DrdI GACNNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 799
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
Eco130I CCWWGG 3 cut(s) 1093, 1147, 1607
Eco24I GRGCYC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 1529
Eco57I CTGAAG 3 cut(s) 504, 1329, 1491
Eco81I CCTNAGG 1 cut(s) 1170
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 3 cut(s) 1093, 1147, 1607
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 3 cut(s) 1093, 1147, 1607
FaeI CATG 7 cut(s) 390, 529, 665, 810, 1128, 1151, 1220
FalI AAGNNNNNCTT 6 cut(s) 120, 152, 290, 322, 1586, 1618
FaqI GGGAC 3 cut(s) 273, 795, 892
FatI CATG 7 cut(s) 386, 525, 661, 806, 1124, 1147, 1216
FauI CCCGC 3 cut(s) 11, 389, 1013
FauNDI CATATG 2 cut(s) 883, 1318
FbaI TGATCA 3 cut(s) 1116, 1162, 1720
Fnu4HI GCNGC 8 cut(s) 153, 156, 159, 530, 726, 1110, 1314, 1715
FokI GGATG 3 cut(s) 839, 1151, 1697
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 8 cut(s) 153, 156, 159, 530, 726, 1110, 1314, 1715
FspBI CTAG 5 cut(s) 504, 594, 986, 1496, 1608
GlaI GCGC 1 cut(s) 1700
GluI GCNGC 8 cut(s) 153, 156, 159, 530, 726, 1110, 1314, 1715
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 2 cut(s) 532, 801
HapII CCGG 2 cut(s) 164, 1561
HgaI GACGC 1 cut(s) 1115
HhaI GCGC 1 cut(s) 1701
Hin1II CATG 7 cut(s) 390, 529, 665, 810, 1128, 1151, 1220
Hin6I GCGC 1 cut(s) 1699
HinP1I GCGC 1 cut(s) 1699
HindIII AAGCTT 6 cut(s) 134, 335, 891, 1131, 1237, 1600
HinfI GANTC 6 cut(s) 110, 121, 174, 399, 597, 1467
HpaII CCGG 2 cut(s) 164, 1561
HphI GGTGA 3 cut(s) 19, 154, 1157
Hpy166II GTNNAC 4 cut(s) 58, 697, 1392, 1642
Hpy8I GTNNAC 4 cut(s) 58, 697, 1392, 1642
HpyAV CCTTC 8 cut(s) 253, 573, 869, 1394, 1567, 1588, 1675, 1767
HpyCH4III ACNGT 3 cut(s) 188, 1291, 1334
HpyCH4V TGCA 5 cut(s) 661, 918, 964, 1056, 1387
HpyF10VI GCNNNNNNNGC 6 cut(s) 158, 227, 535, 1130, 1313, 1742
HpyF3I CTNAG 8 cut(s) 13, 137, 252, 436, 759, 975, 1170, 1515
Hsp92II CATG 7 cut(s) 390, 529, 665, 810, 1128, 1151, 1220
HspAI GCGC 1 cut(s) 1699
Ksp22I TGATCA 3 cut(s) 1116, 1162, 1720
LmnI GCTCC 2 cut(s) 166, 669
Lsp1109I GCAGC 6 cut(s) 139, 142, 145, 712, 1096, 1325
LweI GCATC 2 cut(s) 712, 1401
MaeI CTAG 5 cut(s) 504, 594, 986, 1496, 1608
MaeIII GTNAC 3 cut(s) 1285, 1378, 1576
MflI RGATCY 5 cut(s) 507, 587, 971, 1228, 1510
MhlI GDGCHC 4 cut(s) 368, 437, 674, 1332
MlsI TGGCCA 1 cut(s) 801
MluNI TGGCCA 1 cut(s) 801
MlyI GAGTC 2 cut(s) 130, 606
MmeI TCCRAC 5 cut(s) 33, 161, 516, 642, 747
Mox20I TGGCCA 1 cut(s) 801
MroXI GAANNNNTTC 1 cut(s) 1190
MscI TGGCCA 1 cut(s) 801
MseI TTAA 5 cut(s) 104, 168, 777, 1014, 1524
Msp20I TGGCCA 1 cut(s) 801
MspCI CTTAAG 1 cut(s) 103
MspI CCGG 2 cut(s) 164, 1561
MspR9I CCNGG 1 cut(s) 690
MvaI CCWGG 1 cut(s) 690
MwoI GCNNNNNNNGC 6 cut(s) 158, 227, 535, 1130, 1313, 1742
NcoI CCATGG 1 cut(s) 1147
NdeI CATATG 2 cut(s) 883, 1318
NlaIII CATG 7 cut(s) 390, 529, 665, 810, 1128, 1151, 1220
NlaIV GGNNCC 2 cut(s) 185, 509
NspV TTCGAA 1 cut(s) 1679
PdmI GAANNNNTTC 1 cut(s) 1190
PfeI GAWTC 4 cut(s) 110, 174, 399, 1467
PkrI GCNGC 8 cut(s) 154, 157, 160, 531, 727, 1111, 1315, 1716
PleI GAGTC 2 cut(s) 129, 605
PpsI GAGTC 2 cut(s) 129, 605
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 185, 509
PspPI GGNCC 2 cut(s) 531, 1529
PsrI GAACNNNNNNTAC 2 cut(s) 1357, 1389
PstNI CAGNNNCTG 1 cut(s) 1514
PsuI RGATCY 5 cut(s) 507, 587, 971, 1228, 1510
RsaI GTAC 6 cut(s) 5, 302, 1245, 1281, 1634, 1675
RsaNI GTAC 6 cut(s) 4, 301, 1244, 1280, 1633, 1674
SaqAI TTAA 5 cut(s) 104, 168, 777, 1014, 1524
SatI GCNGC 8 cut(s) 153, 156, 159, 530, 726, 1110, 1314, 1715
Sau96I GGNCC 2 cut(s) 531, 1529
SchI GAGTC 2 cut(s) 130, 606
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 4 cut(s) 368, 437, 674, 1332
SfaNI GCATC 2 cut(s) 712, 1401
SfuI TTCGAA 1 cut(s) 1679
SinI GGWCC 1 cut(s) 1529
SmlI CTYRAG 2 cut(s) 103, 1021
SmoI CTYRAG 2 cut(s) 103, 1021
SsiI CCGC 5 cut(s) 18, 382, 529, 1006, 1714
SspI AATATT 1 cut(s) 842
SspMI CTAG 5 cut(s) 504, 594, 986, 1496, 1608
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 3 cut(s) 1093, 1147, 1607
TaaI ACNGT 3 cut(s) 188, 1291, 1334
TaqI TCGA 6 cut(s) 113, 119, 124, 648, 772, 1679
TatI WGTACW 5 cut(s) 3, 300, 1243, 1279, 1632
TauI GCSGC 2 cut(s) 532, 1717
TfiI GAWTC 4 cut(s) 110, 174, 399, 1467
Tru1I TTAA 5 cut(s) 104, 168, 777, 1014, 1524
Tru9I TTAA 5 cut(s) 104, 168, 777, 1014, 1524
TscAI CASTG 2 cut(s) 1349, 1595
TseI GCWGC 6 cut(s) 152, 155, 158, 725, 1109, 1313
TspDTI ATGAA 6 cut(s) 108, 357, 678, 1155, 1335, 1583
TspRI CASTG 2 cut(s) 1349, 1595
Vha464I CTTAAG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 1529
XapI RAATTY 3 cut(s) 23, 472, 1322
XbaI TCTAGA 2 cut(s) 593, 1495
XmaJI CCTAGG 1 cut(s) 1607
XmnI GAANNNNTTC 1 cut(s) 1190
XspI CTAG 5 cut(s) 504, 594, 986, 1496, 1608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.