Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009520

Physical Location & Seq

Genomic Coordinates Reverse (-)

2032429 .. 2033729

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0026000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCCGCCGAAACCGCCGTCGTCAAGGCCAAGAAGCCGCGATCGCCGCCCGCTCACCCTCCCTTCGTCGAGATGATCACGGAGGCGATTGTCGCCCTGAAGGAGAGGACTGGTTCGAGCCAGTACGCCATCGCCAAATTCGTGGAGGAGAAGCACAAGCAGTTGCCTCAGAGCTTCAAGAAGCTTCTGCTCCTCAACCTGAAGAAGCTCGTCGCCTCCGGCAAGCTCGTCAAGGTCAAGGCCTCCTTCAAGCTCCCTCCTCGCTCCGCCGCCGCCGCGGCTGCTGCTCCGGCCAAGGAGAAGACCAAGCCGGAAGCTTCCAAGCCTAAGAAGTCCGCCGCCAAGACTACTACTAAGCCCAAGGCCAAAACCGTCGCGAAGCCCAAGGCGGTGGCGAAGCCGAAGACCAAGGCTTTGGCGGTGGTTGCGAAGCCCAAGGCGGCGGTGAAGCCGAAGGCGAAGGCCAAAGCGGCTAAGCCTGCTGCTGCCAAGGCGGCGAGGACGTCGTCGAGGACTTCGCCGGGGAAGAGGGTCGAGGCGAAAGCCAAGGCGGCGAAGAAGCCGGCGGCGACTAAGGTCGTGAAGAAGCCGAAGAGTGTGAAGTCTCCGGCGAAGAAGAAGGTTCAGCCGAAGAGGGGCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0023052 GO:0035173 GO:0035184 GO:0035402 GO:0035405 GO:0035407 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0065007 GO:0071704 GO:0071840 GO:0072354 GO:0072355 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Haspin_kinase

Protein Analysis

215

Amino Acids

22.64

Weight (kDa)

11.03

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	19 - 85	5.4e-20	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09450
fragaria_vesca	FvH4_6g08390 FvH4_6g08390 FvH4_6g08390 FvH4_6g08390 FvH4_6g08390 FvH4_6g08390 FvH4_6g08390 FvH4_6g08390
malus_domestica	MD04G1187300.v1.1
prunus_persica	Prupe.6G305800_v2.0.a1
pyrus_communis	pycom04g16540
rosa_chinensis	RchiOBHm_Chr3g0458361
rosa_laevigata	RLG00000025166
rosa_multiflora	Rmu_sc0007338.1_g000011
rosa_roxburghii	Rroxscaffold_6G00421150
rosa_rugosa	Rorug03G0026000
rosa_samantha	Rh3AG086900 Rh3BG089700 Rh3CG090100 Rh3DG090700
rosa_wichuraiana	Rw3G007380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	506
AccBSI	CCGCTC	1 cut(s)	53
AccII	CGCG	3 cut(s)	40, 278, 377
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	2 cut(s)	119, 221
AcyI	GRCGYC	1 cut(s)	503
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	178, 250
AluBI	AGCT	6 cut(s)	174, 184, 208, 226, 253, 317
AluI	AGCT	6 cut(s)	174, 184, 208, 226, 253, 317
Alw26I	GTCTC	1 cut(s)	609
AoxI	GGCC	5 cut(s)	27, 240, 291, 363, 462
ApeKI	GCWGC	4 cut(s)	281, 284, 482, 485
ApoI	RAATTY	1 cut(s)	137
ArsI	GACNNNNNNTTYG	3 cut(s)	35, 397, 429
AsiSI	GCGATCGC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	2 cut(s)	47, 457
BbsI	GAAGAC	2 cut(s)	308, 410
BbvI	GCAGC	4 cut(s)	268, 271, 469, 472
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	2
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	609
BglI	GCCNNNNNGGC	4 cut(s)	278, 470, 494, 551
BlpI	GCTNAGC	1 cut(s)	474
Bme1390I	CCNGG	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	522
BoxI	GACNNNNGTC	1 cut(s)	575
BpiI	GAAGAC	2 cut(s)	308, 410
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	503
BsaJI	CCNNGG	9 cut(s)	276, 294, 360, 384, 408, 435, 489, 521, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	2 cut(s)	115, 121
BseDI	CCNNGG	9 cut(s)	276, 294, 360, 384, 408, 435, 489, 521, 546
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	115, 121
BseRI	GAGGAG	3 cut(s)	161, 182, 249
BseXI	GCAGC	4 cut(s)	268, 271, 469, 472
Bsh1236I	CGCG	3 cut(s)	40, 278, 377
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	5 cut(s)	29, 242, 293, 365, 464
BsiEI	CGRYCG	1 cut(s)	44
BsiSI	CCGG	6 cut(s)	219, 290, 311, 521, 563, 608
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	609
BsnI	GGCC	5 cut(s)	29, 242, 293, 365, 464
Bsp143I	GATC	2 cut(s)	41, 75
Bsp1720I	GCTNAGC	1 cut(s)	474
Bsp68I	TCGCGA	1 cut(s)	377
BspANI	GGCC	5 cut(s)	29, 242, 293, 365, 464
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	3 cut(s)	40, 278, 377
BsrBI	CCGCTC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	562
BsrI	ACTGG	2 cut(s)	115, 121
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	9 cut(s)	276, 294, 360, 384, 408, 435, 489, 521, 546
BssMI	GATC	2 cut(s)	41, 75
BssNI	GRCGYC	1 cut(s)	503
BssT1I	CCWWGG	7 cut(s)	294, 360, 384, 408, 435, 489, 546
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	3 cut(s)	521, 587, 626
BstACI	GRCGYC	1 cut(s)	503
BstC8I	GCNNGC	5 cut(s)	6, 51, 224, 480, 564
BstDEI	CTNAG	5 cut(s)	168, 327, 354, 474, 573
BstDSI	CCRYGG	1 cut(s)	276
BstFNI	CGCG	3 cut(s)	40, 278, 377
BstKTI	GATC	2 cut(s)	44, 78
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	2 cut(s)	41, 75
BstMCI	CGRYCG	1 cut(s)	44
BstPAI	GACNNNNGTC	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	520
BstUI	CGCG	3 cut(s)	40, 278, 377
BstV1I	GCAGC	4 cut(s)	268, 271, 469, 472
BstV2I	GAAGAC	2 cut(s)	308, 410
BstXI	CCANNNNNNTGG	3 cut(s)	142, 391, 415
BsuRI	GGCC	5 cut(s)	29, 242, 293, 365, 464
BtgI	CCRYGG	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	115
BtuMI	TCGCGA	1 cut(s)	377
Cac8I	GCNNGC	5 cut(s)	6, 51, 224, 480, 564
Cfr10I	RCCGGY	1 cut(s)	562
Cfr42I	CCGCGG	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	124
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	5 cut(s)	168, 327, 354, 474, 573
DpnI	GATC	2 cut(s)	43, 77
DpnII	GATC	2 cut(s)	41, 75
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	3 cut(s)	521, 587, 626
EarI	CTCTTC	3 cut(s)	521, 587, 626
EciI	GGCGGA	2 cut(s)	256, 325
Eco130I	CCWWGG	7 cut(s)	294, 360, 384, 408, 435, 489, 546
Eco147I	AGGCCT	1 cut(s)	242
Eco57I	CTGAAG	2 cut(s)	119, 221
EcoT14I	CCWWGG	7 cut(s)	294, 360, 384, 408, 435, 489, 546
ErhI	CCWWGG	7 cut(s)	294, 360, 384, 408, 435, 489, 546
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FauI	CCCGC	2 cut(s)	13, 58
FbaI	TGATCA	1 cut(s)	75
HaeIII	GGCC	5 cut(s)	29, 242, 293, 365, 464
HapII	CCGG	6 cut(s)	219, 290, 311, 521, 563, 608
Hin1I	GRCGYC	1 cut(s)	503
HindIII	AAGCTT	2 cut(s)	182, 315
HpaII	CCGG	6 cut(s)	219, 290, 311, 521, 563, 608
HphI	GGTGA	2 cut(s)	47, 457
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	4 cut(s)	70, 178, 376, 580
Hpy99I	CGWCG	6 cut(s)	23, 71, 215, 377, 508, 511
HpyAV	CCTTC	6 cut(s)	73, 94, 256, 448, 454, 613
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	503
HpyF3I	CTNAG	5 cut(s)	168, 327, 354, 474, 573
HpySE526I	ACGT	1 cut(s)	503
Hsp92I	GRCGYC	1 cut(s)	503
KroI	GCCGGC	1 cut(s)	562
KroNI	GCCGGC	1 cut(s)	564
Ksp22I	TGATCA	1 cut(s)	75
KspI	CCGCGG	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	41, 75
LmnI	GCTCC	4 cut(s)	195, 258, 269, 292
Lsp1109I	GCAGC	4 cut(s)	268, 271, 469, 472
MaeII	ACGT	1 cut(s)	503
MalI	GATC	2 cut(s)	43, 77
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	2 cut(s)	41, 75
MluCI	AATT	1 cut(s)	137
MroNI	GCCGGC	1 cut(s)	562
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	6 cut(s)	219, 290, 311, 521, 563, 608
MspR9I	CCNGG	1 cut(s)	522
MvnI	CGCG	3 cut(s)	40, 278, 377
NaeI	GCCGGC	1 cut(s)	564
NciI	CCSGG	1 cut(s)	522
NdeII	GATC	2 cut(s)	41, 75
NgoMIV	GCCGGC	1 cut(s)	562
NruI	TCGCGA	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	564
PflFI	GACNNNGTC	1 cut(s)	505
Ple19I	CGATCG	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	575
PsyI	GACNNNGTC	1 cut(s)	505
PvuI	CGATCG	1 cut(s)	44
RgaI	GCGATCGC	1 cut(s)	44
RruI	TCGCGA	1 cut(s)	377
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SacII	CCGCGG	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	41, 75
ScrFI	CCNGG	1 cut(s)	522
SfaAI	GCGATCGC	1 cut(s)	44
Sfr303I	CCGCGG	1 cut(s)	279
SgfI	GCGATCGC	1 cut(s)	44
SgrBI	CCGCGG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	137
SseBI	AGGCCT	1 cut(s)	242
StuI	AGGCCT	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	7 cut(s)	294, 360, 384, 408, 435, 489, 546
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	4 cut(s)	69, 116, 509, 534
TasI	AATT	1 cut(s)	137
TseI	GCWGC	4 cut(s)	281, 284, 482, 485
TspGWI	ACGGA	1 cut(s)	95
Tth111I	GACNNNGTC	1 cut(s)	505
XapI	RAATTY	1 cut(s)	137
ZraI	GACGTC	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.