FvH4_6g08620
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
5124737 .. 5127416
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08620.t1

Sequence Viewer

Length: 1326 bp
ATGGGGAGGCATTCTTGTTGCTACAAGCAGAAGCTTAGGAAAGGCCTCTGGTCTCCTGAAGAAGATGAGAAGCTTCTCAATTACATCACTAAGCATGGCCATGGCTGTTGGAGCTCAGTCCCTAAGCTTGCAGGCCTACAAAGATGTGGGAAGAGCTGCAGGTTGAGGTGGATAAACTACCTGAGGCCTGATTTGAAGAGAGGTCCATTCTCACAGCAAGAAGAGAATTTGATAATAGAGCTTCATGCAGTTCTGGGAAACAGGTGGTCTCAGATTGCAGCTCAATTACCAGGAAGGACAGACAATGAGATCAAGAATCTATGGAATTCCTGCATTAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCCAACACTCACAAACCAATCTCATCAGAAACTGAACAAACTGATCACAGCAAAGAGATAAGCCAGCTCTCCTCTCCAACAAACTACAAAGGCAATGAGCAGCAAAAAGCCTCTGTGGGATCCAATGAACTCAATCTGGTTGAGGCTGTAGCGAATTCCAAGCAAGTCGAACACCACAGGTACCCAGTTGAGGTCTCTTCTTCCAGTAAAGTTATCAGCAACAGCAACAACACCCAAGACTTCTTCATAGACAGAGCTGCTTGTACCTCGCATGAAGGCTCCACCACCACCAATTGCAGGCCTTCTGATTTTGTGGGGTATTTCTCTTTCCATCATCACCACCAGTTCGGGTCATCATCTTCAGAGACCATGGGGCTCAATGCAGTAAATCCAAACCAAACTTTCAGCTTCCTCAATCAAAACTCCAGGTCCAACTCTGATCCTCAAATGGTGTCCGAGTTCAGCACCAGCATGACTACACCACCGTCACTTCTGCCCTCCATGTCAAGTAGCTCACTTTTCGGCACACGTGTGAAGCCTTCCATTAGTCTTCCCTCTGATAATTCTTCCACTGTCTCATGGGACCAGTCCAGTGCCGGCTACAGTAACAATGGCGGGTTCGACAACACTGCAGCCGCTTTCTCTTGGGGGCTACTGCCAGAAGTGCCTGTGAAATCCGACGACGTAGAAGAGATTAACAAATGGTCTGAGTATATCCACAGTCCATTTCTGATGGGAGCAAACACTATGCAGAATATAAATCAATCCTCCCAGTATAACAGTACTGAAATCAAACCAGAAACACAGTACTTCATGACCAGCAATGGAGCAAGTAGTGCTAGTGCAGCCACCACGAGTTGGCCTCATCATCATCAGCAAGCCAATAACTTACAACCTTCTTCAGAAATGTACACAAAGGATCTTCAGAGACTCGCAGTAGCTTTTGGACAGACCCTTTAA

Protein Analysis

442

Amino Acids

49.14

Weight (kDa)

7.28

Isoelectric Point (pI)

56.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 4.2e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 110 4.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015647)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
Acc65I GGTACC 1 cut(s) 546
AccB1I GGYRCC 1 cut(s) 546
AccB7I CCANNNNNTGG 1 cut(s) 1224
AciI CCGC 2 cut(s) 981, 1002
AclWI GGATC 4 cut(s) 480, 493, 800, 1293
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 3 cut(s) 226, 325, 520
AcuI CTGAAG 4 cut(s) 78, 711, 1251, 1274
AcvI CACGTG 1 cut(s) 896
AfaI GTAC 5 cut(s) 548, 631, 1150, 1175, 1277
AfiI CCNNNNNNNGG 3 cut(s) 556, 663, 1224
AflIII ACRYGT 2 cut(s) 893, 895
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 2 cut(s) 289, 791
AleI CACNNNNGTG 1 cut(s) 896
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 6 cut(s) 57, 273, 565, 725, 946, 1288
AlwI GGATC 4 cut(s) 480, 493, 800, 1293
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 6 cut(s) 43, 97, 133, 185, 665, 1226
ApeKI GCWGC 6 cut(s) 156, 278, 466, 623, 998, 1211
ApoI RAATTY 3 cut(s) 226, 325, 520
Asp718I GGTACC 1 cut(s) 546
AspS9I GGNCC 3 cut(s) 203, 795, 949
AsuHPI GGTGA 1 cut(s) 695
AvaII GGWCC 3 cut(s) 203, 795, 949
AxyI CCTNAGG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 99
BamHI GGATCC 1 cut(s) 485
BanI GGYRCC 1 cut(s) 546
BanII GRGCYC 2 cut(s) 116, 744
BauI CACGAG 1 cut(s) 1219
BbrPI CACGTG 1 cut(s) 896
BbsI GAAGAC 1 cut(s) 908
Bbv12I GWGCWC 1 cut(s) 116
BbvCI CCTCAGC 1 cut(s) 347
BbvI GCAGC 6 cut(s) 143, 290, 478, 610, 1010, 1223
BccI CCATC 2 cut(s) 705, 1093
BcgI CGANNNNNNTGC 2 cut(s) 977, 1011
BciT130I CCWGG 2 cut(s) 291, 793
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 6 cut(s) 57, 273, 565, 725, 946, 1288
BfaI CTAG 1 cut(s) 1206
BfmI CTRYAG 4 cut(s) 157, 513, 967, 996
BfuAI ACCTGC 1 cut(s) 150
BisI GCNGC 7 cut(s) 157, 279, 467, 624, 999, 1002, 1212
BlsI GCNGC 7 cut(s) 158, 280, 468, 625, 1000, 1003, 1213
BmcAI AGTACT 2 cut(s) 1150, 1175
Bme1390I CCNGG 2 cut(s) 291, 793
Bme18I GGWCC 3 cut(s) 203, 795, 949
BmgT120I GGNCC 3 cut(s) 203, 795, 949
BmiI GGNNCC 4 cut(s) 487, 548, 646, 950
BmrFI CCNGG 2 cut(s) 291, 793
BmrI ACTGGG 2 cut(s) 545, 1132
BmuI ACTGGG 2 cut(s) 545, 1132
BpiI GAAGAC 1 cut(s) 908
BplI GAGNNNNNCTC 2 cut(s) 1213, 1245
BpmI CTGGAG 1 cut(s) 775
Bpu10I CCTNAGC 3 cut(s) 35, 123, 347
BsaAI YACGTR 1 cut(s) 896
BsaI GGTCTC 4 cut(s) 57, 273, 565, 725
BsaJI CCNNGG 2 cut(s) 100, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 556, 663, 1224
Bse118I RCCGGY 1 cut(s) 962
Bse1I ACTGG 6 cut(s) 551, 570, 709, 952, 957, 1138
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 2 cut(s) 466, 1195
BseBI CCWGG 2 cut(s) 291, 793
BseDI CCNNGG 2 cut(s) 100, 735
BseLI CCNNNNNNNGG 3 cut(s) 556, 663, 1224
BseMI GCAATG 2 cut(s) 466, 1195
BseMII CTCAG 5 cut(s) 129, 173, 284, 338, 1065
BseNI ACTGG 6 cut(s) 551, 570, 709, 952, 957, 1138
BseRI GAGGAG 1 cut(s) 427
BseXI GCAGC 6 cut(s) 143, 290, 478, 610, 1010, 1223
BsgI GTGCAG 1 cut(s) 1230
BshFI GGCC 6 cut(s) 45, 99, 135, 187, 667, 1228
BshNI GGYRCC 1 cut(s) 546
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 963
BslFI GGGAC 2 cut(s) 104, 962
BslI CCNNNNNNNGG 3 cut(s) 556, 663, 1224
BsmAI GTCTC 6 cut(s) 57, 273, 565, 725, 946, 1288
BsmFI GGGAC 2 cut(s) 104, 962
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 6 cut(s) 45, 99, 135, 187, 667, 1228
Bso31I GGTCTC 4 cut(s) 57, 273, 565, 725
Bsp1286I GDGCHC 2 cut(s) 116, 744
Bsp1407I TGTACA 1 cut(s) 1275
Bsp143I GATC 5 cut(s) 309, 409, 485, 805, 1285
Bsp19I CCATGG 2 cut(s) 100, 735
BspACI CCGC 2 cut(s) 981, 1002
BspANI GGCC 6 cut(s) 45, 99, 135, 187, 667, 1228
BspCNI CTCAG 5 cut(s) 128, 174, 283, 339, 1066
BspHI TCATGA 1 cut(s) 1179
BspLI GGNNCC 4 cut(s) 487, 548, 646, 950
BspMAI CTGCAG 2 cut(s) 161, 1000
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 4 cut(s) 480, 493, 800, 1293
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 546
BspTNI GGTCTC 4 cut(s) 57, 273, 565, 725
BsrDI GCAATG 2 cut(s) 466, 1195
BsrFI RCCGGY 1 cut(s) 962
BsrGI TGTACA 1 cut(s) 1275
BsrI ACTGG 6 cut(s) 551, 570, 709, 952, 957, 1138
BssAI RCCGGY 1 cut(s) 962
BssECI CCNNGG 2 cut(s) 100, 735
BssMI GATC 5 cut(s) 309, 409, 485, 805, 1285
BssSI CACGAG 1 cut(s) 1219
BssT1I CCWWGG 2 cut(s) 100, 735
Bst2BI CACGAG 1 cut(s) 1219
Bst2UI CCWGG 2 cut(s) 291, 793
Bst4CI ACNGT 6 cut(s) 852, 940, 971, 1088, 1148, 1173
Bst6I CTCTTC 5 cut(s) 146, 191, 216, 568, 1050
BstAPI GCANNNNNTGC 1 cut(s) 1202
BstAUI TGTACA 1 cut(s) 1275
BstBAI YACGTR 1 cut(s) 896
BstC8I GCNNGC 6 cut(s) 129, 133, 431, 665, 964, 1245
BstDEI CTNAG 8 cut(s) 35, 90, 115, 123, 182, 270, 347, 1074
BstDSI CCRYGG 2 cut(s) 100, 735
BstKTI GATC 5 cut(s) 312, 412, 488, 808, 1288
BstMAI GTCTC 6 cut(s) 57, 273, 565, 725, 946, 1288
BstMBI GATC 5 cut(s) 309, 409, 485, 805, 1285
BstMWI GCNNNNNNNGC 4 cut(s) 111, 1030, 1202, 1211
BstNI CCWGG 2 cut(s) 291, 793
BstSCI CCNGG 2 cut(s) 289, 791
BstSFI CTRYAG 4 cut(s) 157, 513, 967, 996
BstV1I GCAGC 6 cut(s) 143, 290, 478, 610, 1010, 1223
BstV2I GAAGAC 1 cut(s) 908
BstX2I RGATCY 2 cut(s) 485, 1285
BstYI RGATCY 2 cut(s) 485, 1285
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 6 cut(s) 45, 99, 135, 187, 667, 1228
BtgI CCRYGG 2 cut(s) 100, 735
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 3 cut(s) 936, 964, 993
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 6 cut(s) 129, 133, 431, 665, 964, 1245
CaiI CAGNNNCTG 1 cut(s) 398
CciI TCATGA 1 cut(s) 1179
Cfr10I RCCGGY 1 cut(s) 962
Cfr13I GGNCC 3 cut(s) 203, 795, 949
Csp6I GTAC 5 cut(s) 547, 630, 1149, 1174, 1276
CviAII CATG 9 cut(s) 95, 101, 245, 638, 736, 838, 868, 945, 1180
CviQI GTAC 5 cut(s) 547, 630, 1149, 1174, 1276
DdeI CTNAG 8 cut(s) 35, 90, 115, 123, 182, 270, 347, 1074
DpnI GATC 5 cut(s) 311, 411, 487, 807, 1287
DpnII GATC 5 cut(s) 309, 409, 485, 805, 1285
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 5 cut(s) 146, 191, 216, 568, 1050
EarI CTCTTC 5 cut(s) 146, 191, 216, 568, 1050
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 100, 735
Eco147I AGGCCT 4 cut(s) 45, 135, 187, 667
Eco24I GRGCYC 2 cut(s) 116, 744
Eco31I GGTCTC 4 cut(s) 57, 273, 565, 725
Eco47I GGWCC 3 cut(s) 203, 795, 949
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 4 cut(s) 78, 711, 1251, 1274
Eco72I CACGTG 1 cut(s) 896
Eco81I CCTNAGG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 114
EcoRI GAATTC 2 cut(s) 325, 520
EcoRII CCWGG 2 cut(s) 289, 791
EcoT14I CCWWGG 2 cut(s) 100, 735
EcoT38I GRGCYC 2 cut(s) 116, 744
ErhI CCWWGG 2 cut(s) 100, 735
FaeI CATG 9 cut(s) 98, 104, 248, 641, 739, 841, 871, 948, 1183
FaqI GGGAC 2 cut(s) 104, 962
FatI CATG 9 cut(s) 94, 100, 244, 637, 735, 837, 867, 944, 1179
FauI CCCGC 1 cut(s) 974
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 7 cut(s) 157, 279, 467, 624, 999, 1002, 1212
FriOI GRGCYC 2 cut(s) 116, 744
Fsp4HI GCNGC 7 cut(s) 157, 279, 467, 624, 999, 1002, 1212
FspBI CTAG 1 cut(s) 1206
GluI GCNGC 7 cut(s) 157, 279, 467, 624, 999, 1002, 1212
GsuI CTGGAG 1 cut(s) 775
HaeIII GGCC 6 cut(s) 45, 99, 135, 187, 667, 1228
HapII CCGG 1 cut(s) 963
Hin1II CATG 9 cut(s) 98, 104, 248, 641, 739, 841, 871, 948, 1183
HindIII AAGCTT 3 cut(s) 32, 71, 125
HinfI GANTC 2 cut(s) 316, 1296
HpaII CCGG 1 cut(s) 963
HphI GGTGA 1 cut(s) 695
Hpy166II GTNNAC 1 cut(s) 1278
Hpy188III TCNNGA 3 cut(s) 56, 313, 1180
Hpy8I GTNNAC 1 cut(s) 1278
Hpy99I CGWCG 2 cut(s) 1049, 1052
HpyAV CCTTC 5 cut(s) 288, 635, 678, 915, 1272
HpyCH4III ACNGT 6 cut(s) 852, 940, 971, 1088, 1148, 1173
HpyCH4IV ACGT 2 cut(s) 895, 1050
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 1030, 1202, 1211
HpyF3I CTNAG 8 cut(s) 35, 90, 115, 123, 182, 270, 347, 1074
HpySE526I ACGT 2 cut(s) 895, 1050
Hsp92II CATG 9 cut(s) 98, 104, 248, 641, 739, 841, 871, 948, 1183
KpnI GGTACC 1 cut(s) 550
KroI GCCGGC 1 cut(s) 962
KroNI GCCGGC 1 cut(s) 964
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 5 cut(s) 309, 409, 485, 805, 1285
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 4 cut(s) 111, 650, 1103, 1193
Lsp1109I GCAGC 6 cut(s) 143, 290, 478, 610, 1010, 1223
MaeI CTAG 1 cut(s) 1206
MaeII ACGT 2 cut(s) 895, 1050
MaeIII GTNAC 2 cut(s) 852, 971
MalI GATC 5 cut(s) 311, 411, 487, 807, 1287
MboI GATC 5 cut(s) 309, 409, 485, 805, 1285
MfeI CAATTG 1 cut(s) 658
MflI RGATCY 2 cut(s) 485, 1285
MhlI GDGCHC 2 cut(s) 116, 744
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 7 cut(s) 79, 226, 284, 325, 520, 658, 928
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 1290
MmeI TCCRAC 4 cut(s) 89, 467, 822, 1068
Mox20I TGGCCA 1 cut(s) 99
MroNI GCCGGC 1 cut(s) 962
MscI TGGCCA 1 cut(s) 99
MseI TTAA 3 cut(s) 336, 1062, 1324
MslI CAYNNNNRTG 3 cut(s) 99, 836, 896
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 1 cut(s) 963
MspR9I CCNGG 2 cut(s) 291, 793
MunI CAATTG 1 cut(s) 658
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 2 cut(s) 291, 793
MwoI GCNNNNNNNGC 4 cut(s) 111, 1030, 1202, 1211
NaeI GCCGGC 1 cut(s) 964
NcoI CCATGG 2 cut(s) 100, 735
NdeII GATC 5 cut(s) 309, 409, 485, 805, 1285
NgoMIV GCCGGC 1 cut(s) 962
NlaIII CATG 9 cut(s) 98, 104, 248, 641, 739, 841, 871, 948, 1183
NlaIV GGNNCC 4 cut(s) 487, 548, 646, 950
NmuCI GTSAC 1 cut(s) 852
OliI CACNNNNGTG 1 cut(s) 896
PagI TCATGA 1 cut(s) 1179
PceI AGGCCT 4 cut(s) 45, 135, 187, 667
PciSI GCTCTTC 1 cut(s) 146
PctI GAATGC 1 cut(s) 10
PdiI GCCGGC 1 cut(s) 964
PfeI GAWTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 1224
PkrI GCNGC 7 cut(s) 158, 280, 468, 625, 1000, 1003, 1213
PleI GAGTC 1 cut(s) 1290
PmaCI CACGTG 1 cut(s) 896
PmlI CACGTG 1 cut(s) 896
PpsI GAGTC 1 cut(s) 1290
Ppu21I YACGTR 1 cut(s) 896
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 289, 791
PspCI CACGTG 1 cut(s) 896
PspGI CCWGG 2 cut(s) 289, 791
PspN4I GGNNCC 4 cut(s) 487, 548, 646, 950
PspPI GGNCC 3 cut(s) 203, 795, 949
PstI CTGCAG 2 cut(s) 161, 1000
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 2 cut(s) 485, 1285
RsaI GTAC 5 cut(s) 548, 631, 1150, 1175, 1277
RsaNI GTAC 5 cut(s) 547, 630, 1149, 1174, 1276
RseI CAYNNNNRTG 3 cut(s) 99, 836, 896
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 336, 1062, 1324
SatI GCNGC 7 cut(s) 157, 279, 467, 624, 999, 1002, 1212
Sau3AI GATC 5 cut(s) 309, 409, 485, 805, 1285
Sau96I GGNCC 3 cut(s) 203, 795, 949
ScaI AGTACT 2 cut(s) 1150, 1175
SchI GAGTC 1 cut(s) 1290
ScrFI CCNGG 2 cut(s) 291, 793
SduI GDGCHC 2 cut(s) 116, 744
SfcI CTRYAG 4 cut(s) 157, 513, 967, 996
SinI GGWCC 3 cut(s) 203, 795, 949
SmiMI CAYNNNNRTG 3 cut(s) 99, 836, 896
Sse9I AATT 7 cut(s) 79, 226, 284, 325, 520, 658, 928
SseBI AGGCCT 4 cut(s) 45, 135, 187, 667
SsiI CCGC 2 cut(s) 981, 1002
SspMI CTAG 1 cut(s) 1206
SstI GAGCTC 1 cut(s) 116
StuI AGGCCT 4 cut(s) 45, 135, 187, 667
StyD4I CCNGG 2 cut(s) 289, 791
StyI CCWWGG 2 cut(s) 100, 735
TaaI ACNGT 6 cut(s) 852, 940, 971, 1088, 1148, 1173
TaiI ACGT 2 cut(s) 898, 1053
TaqI TCGA 2 cut(s) 534, 987
TasI AATT 7 cut(s) 79, 226, 284, 325, 520, 658, 928
TatI WGTACW 3 cut(s) 1148, 1173, 1275
TauI GCSGC 1 cut(s) 1004
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 3 cut(s) 336, 1062, 1324
Tru9I TTAA 3 cut(s) 336, 1062, 1324
TscAI CASTG 3 cut(s) 943, 964, 1000
TseFI GTSAC 1 cut(s) 852
TseI GCWGC 6 cut(s) 156, 278, 466, 623, 998, 1211
Tsp45I GTSAC 1 cut(s) 852
TspDTI ATGAA 5 cut(s) 233, 507, 601, 654, 1168
TspRI CASTG 3 cut(s) 943, 964, 1000
Van91I CCANNNNNTGG 1 cut(s) 1224
VpaK11BI GGWCC 3 cut(s) 203, 795, 949
XapI RAATTY 3 cut(s) 226, 325, 520
XspI CTAG 1 cut(s) 1206
ZrmI AGTACT 2 cut(s) 1150, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.