MD12G1198600.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015647
Physical Location & Seq
Reverse (-)
27960014 .. 27962073
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1198600.v1.1.491

Sequence Viewer

Length: 1242 bp
ATGGGGAGGCACTCTTGTTGCTACAAGCAGAAGCTAAGGAAAGGCCTCTGGTCTCCTGAAGAGGATGAGAAGCTTCTCAATTACATCACCAAGCATGGCCATGGCTGCTGGAGCTCAGTCCCTAAATTAGCAGGTTTGCAGAGGTGTGGGAAGAGCTGCAGGTTAAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGACCATTCTCACAGCAAGAAGAGAATTTGATAGTAGAACTCCATGCAGTTCTTGGCAACAGATGGTCTCAGATTGCAGCCCAGTTACCAGGAAGAACAGACAATGAGATTAAAAATCTATGGAATTCCTGCATTAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCCAACACTCACAAACTACTCTCAGAAGTGCTTAATCAAAATATTGACACAGAAACTAACAACAATAATAATATTAATCTCTCCCCAACTTACAAGAGTAATGAGAAGGCCTCTGAGGGATCCAATGAGCTGAGCTTGGTTGAGGCAGTGAGTTCAAAGCACCCGCCTTCAGCGTCCGAAAACCGATTCAACCCTGTTGAAGTTTCCTCCACCTCCAAACTCATCAGCAGCAAAAGTTTGACACATGAAGGCTCCATCAGTAGTTGCAGGCCTTGTGATTTTGTGGGGTACTTTTCTTTTCCTCATCACAATAACCAGAACAATTATGGGTCGTCGTCAGATATGGGGCTGCAGGCGGTAAATCAAAACACCACTTTCAGCTTCCTCAATCAAAATCCAGAGTTCCTGCAACCGTCCATGTCATCAAGCTCCGCCATTTTCACCGCCCCTCCTCCTCCCACACGTGTGAAGCCTTCCATCAGCCTCCCATCTAATAACTCCTCCACCTGGGACTCCAATGCCAACAACAGCAACAGCAGCGGCGGCGGCTATTTCGACAACTCTGCAACCTTTTCTTGGTGGCCTCCGGAGGCGGTAAAATCCGACGACCCAGAAGAGATCAAATGGTCTGAACATCTCCACAACACCTCATTTCTGATGGGAACCCACCAAGCCTCTCAGCCTGCTAATTACTCAGAAATGAAACCAGAATCCCATTCACACATTTTATCAAACAGTTTGAGTGCAACGTATTGGCACCACCAAAACCACCACCACCACCACCACCACCAGCAGCACCAGCAAGCTTTACAAGCTTCAGAGATGTACACAAAGGATCTTCAGAGACTTGCCGTAGCTTTTGGACAAACCCTTTAG

Protein Analysis

414

Amino Acids

46.49

Weight (kDa)

8.09

Isoelectric Point (pI)

57.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 3.8e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 110 4.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 120 4.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015647)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08620
malus_domestica MD04G1184900.v1.1 MD12G1198600.v1.1
prunus_persica Prupe.6G303300_v2.0.a1
pyrus_communis pycom04g16420 pycom12g18500
rosa_chinensis RchiOBHm_Chr3g0458721
rosa_laevigata RLG00000025139
rosa_multiflora Rmu_sc0001634.1_g000020
rosa_roxburghii Rroxscaffold_6G00420840
rosa_rugosa Rorug03G0031500
rosa_samantha Rh3AG089100 Rh3BG091900 Rh3CG092300 Rh3DG093000
rosa_wichuraiana Rw3G007620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 122, 150
AccB1I GGYRCC 1 cut(s) 1122
AccIII TCCGGA 1 cut(s) 952
AciI CCGC 8 cut(s) 530, 722, 798, 810, 906, 909, 912, 959
AclWI GGATC 3 cut(s) 480, 493, 1209
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 226, 325
AcuI CTGAAG 4 cut(s) 78, 519, 1167, 1190
AcvI CACGTG 1 cut(s) 830
AfaI GTAC 2 cut(s) 656, 1193
AfiI CCNNNNNNNGG 2 cut(s) 873, 942
AflIII ACRYGT 2 cut(s) 827, 829
AgsI TTSAA 4 cut(s) 196, 522, 556, 566
AjnI CCWGG 2 cut(s) 289, 872
AleI CACNNNNGTG 1 cut(s) 830
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 3 cut(s) 57, 273, 1204
AlwI GGATC 3 cut(s) 480, 493, 1209
Aor13HI TCCGGA 1 cut(s) 952
AoxI GGCC 6 cut(s) 43, 97, 185, 474, 635, 947
ApeKI GCWGC 7 cut(s) 105, 156, 278, 594, 715, 903, 1159
ApoI RAATTY 2 cut(s) 226, 325
AseI ATTAAT 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 79, 799
AvaII GGWCC 1 cut(s) 203
AxyI CCTNAGG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 99
BamHI GGATCC 1 cut(s) 485
BanI GGYRCC 1 cut(s) 1122
BanII GRGCYC 1 cut(s) 116
BbrPI CACGTG 1 cut(s) 830
Bbv12I GWGCWC 1 cut(s) 116
BbvCI CCTCAGC 1 cut(s) 347
BbvI GCAGC 7 cut(s) 92, 143, 290, 606, 702, 915, 1171
BccI CCATC 5 cut(s) 258, 629, 851, 862, 1018
BceAI ACGGC 1 cut(s) 1202
BcgI CGANNNNNNTGC 2 cut(s) 911, 945
BciT130I CCWGG 2 cut(s) 291, 874
BcoDI GTCTC 3 cut(s) 57, 273, 1204
BfmI CTRYAG 2 cut(s) 157, 716
BfuAI ACCTGC 2 cut(s) 122, 150
BlpI GCTNAGC 1 cut(s) 497
Bme1390I CCNGG 2 cut(s) 291, 874
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 4 cut(s) 487, 619, 1030, 1124
BmrFI CCNGG 2 cut(s) 291, 874
BmrI ACTGGG 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 277
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 2 cut(s) 35, 347
Bpu1102I GCTNAGC 1 cut(s) 497
BsaAI YACGTR 1 cut(s) 830
BsaI GGTCTC 2 cut(s) 57, 273
BsaJI CCNNGG 2 cut(s) 100, 873
BsaWI WCCGGW 1 cut(s) 952
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 2 cut(s) 873, 942
Bse1I ACTGG 1 cut(s) 283
Bse21I CCTNAGG 1 cut(s) 182
BseAI TCCGGA 1 cut(s) 952
BseBI CCWGG 2 cut(s) 291, 874
BseDI CCNNGG 2 cut(s) 100, 873
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 873, 942
BseMII CTCAG 9 cut(s) 129, 173, 284, 338, 402, 471, 488, 1058, 1074
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 3 cut(s) 807, 810, 856
BseXI GCAGC 7 cut(s) 92, 143, 290, 606, 702, 915, 1171
BshFI GGCC 6 cut(s) 45, 99, 187, 476, 637, 949
BshNI GGYRCC 1 cut(s) 1122
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 953
BslFI GGGAC 2 cut(s) 104, 890
BslI CCNNNNNNNGG 2 cut(s) 873, 942
BsmAI GTCTC 3 cut(s) 57, 273, 1204
BsmFI GGGAC 2 cut(s) 104, 890
BsnI GGCC 6 cut(s) 45, 99, 187, 476, 637, 949
Bso31I GGTCTC 2 cut(s) 57, 273
Bsp1286I GDGCHC 1 cut(s) 116
Bsp13I TCCGGA 1 cut(s) 952
Bsp1407I TGTACA 1 cut(s) 1191
Bsp143I GATC 3 cut(s) 485, 984, 1201
Bsp1720I GCTNAGC 1 cut(s) 497
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 8 cut(s) 530, 722, 798, 810, 906, 909, 912, 959
BspANI GGCC 6 cut(s) 45, 99, 187, 476, 637, 949
BspCNI CTCAG 9 cut(s) 128, 174, 283, 339, 401, 472, 489, 1057, 1073
BspEI TCCGGA 1 cut(s) 952
BspLI GGNNCC 4 cut(s) 487, 619, 1030, 1124
BspMAI CTGCAG 2 cut(s) 161, 720
BspMI ACCTGC 2 cut(s) 122, 150
BspPI GGATC 3 cut(s) 480, 493, 1209
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 1122
BspTNI GGTCTC 2 cut(s) 57, 273
BsrGI TGTACA 1 cut(s) 1191
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 100, 873
BssMI GATC 3 cut(s) 485, 984, 1201
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 2 cut(s) 291, 874
Bst4CI ACNGT 2 cut(s) 780, 1103
Bst6I CTCTTC 5 cut(s) 54, 146, 191, 216, 975
BstAUI TGTACA 1 cut(s) 1191
BstBAI YACGTR 1 cut(s) 830
BstC8I GCNNGC 4 cut(s) 635, 720, 1050, 1170
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 3 cut(s) 488, 987, 1204
BstMAI GTCTC 3 cut(s) 57, 273, 1204
BstMBI GATC 3 cut(s) 485, 984, 1201
BstMWI GCNNNNNNNGC 7 cut(s) 105, 111, 903, 909, 912, 1165, 1178
BstNI CCWGG 2 cut(s) 291, 874
BstSCI CCNGG 2 cut(s) 289, 872
BstSFI CTRYAG 2 cut(s) 157, 716
BstV1I GCAGC 7 cut(s) 92, 143, 290, 606, 702, 915, 1171
BstX2I RGATCY 2 cut(s) 485, 1201
BstYI RGATCY 2 cut(s) 485, 1201
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 6 cut(s) 45, 99, 187, 476, 637, 949
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 1 cut(s) 519
BveI ACCTGC 2 cut(s) 122, 150
Cac8I GCNNGC 4 cut(s) 635, 720, 1050, 1170
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 1 cut(s) 528
Csp6I GTAC 2 cut(s) 655, 1192
CviAII CATG 5 cut(s) 95, 101, 245, 611, 784
CviQI GTAC 2 cut(s) 655, 1192
DpnI GATC 3 cut(s) 487, 986, 1203
DpnII GATC 3 cut(s) 485, 984, 1201
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 5 cut(s) 54, 146, 191, 216, 975
EarI CTCTTC 5 cut(s) 54, 146, 191, 216, 975
EciI GGCGGA 1 cut(s) 787
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 100
Eco147I AGGCCT 4 cut(s) 45, 187, 476, 637
Eco24I GRGCYC 1 cut(s) 116
Eco31I GGTCTC 2 cut(s) 57, 273
Eco47I GGWCC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 4 cut(s) 78, 519, 1167, 1190
Eco72I CACGTG 1 cut(s) 830
Eco81I CCTNAGG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 289, 872
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 5 cut(s) 98, 104, 248, 614, 787
FaiI YATR 8 cut(s) 96, 102, 246, 322, 612, 693, 710, 785
FaqI GGGAC 2 cut(s) 104, 890
FatI CATG 5 cut(s) 94, 100, 244, 610, 783
FauI CCCGC 1 cut(s) 537
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 6 cut(s) 45, 99, 187, 476, 637, 949
HapII CCGG 1 cut(s) 953
HgaI GACGC 1 cut(s) 528
Hin1II CATG 5 cut(s) 98, 104, 248, 614, 787
HindIII AAGCTT 3 cut(s) 71, 1170, 1179
HinfI GANTC 3 cut(s) 552, 878, 1076
HpaII CCGG 1 cut(s) 953
HphI GGTGA 2 cut(s) 79, 799
Hpy166II GTNNAC 1 cut(s) 1194
Hpy188III TCNNGA 3 cut(s) 56, 764, 953
Hpy8I GTNNAC 1 cut(s) 1194
Hpy99I CGWCG 2 cut(s) 703, 974
HpyAV CCTTC 4 cut(s) 466, 543, 608, 849
HpyCH4III ACNGT 2 cut(s) 780, 1103
HpyCH4IV ACGT 2 cut(s) 829, 1115
HpyF10VI GCNNNNNNNGC 7 cut(s) 105, 111, 903, 909, 912, 1165, 1178
HpySE526I ACGT 2 cut(s) 829, 1115
Hsp92II CATG 5 cut(s) 98, 104, 248, 614, 787
Kpn2I TCCGGA 1 cut(s) 952
Kzo9I GATC 3 cut(s) 485, 984, 1201
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 3 cut(s) 111, 623, 800
Lsp1109I GCAGC 7 cut(s) 92, 143, 290, 606, 702, 915, 1171
MaeII ACGT 2 cut(s) 829, 1115
MaeIII GTNAC 1 cut(s) 285
MalI GATC 3 cut(s) 487, 986, 1203
MboI GATC 3 cut(s) 485, 984, 1201
MboII GAAGA 8 cut(s) 71, 163, 208, 233, 306, 352, 992, 1196
MflI RGATCY 2 cut(s) 485, 1201
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 7 cut(s) 79, 125, 175, 226, 325, 688, 1054
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 1 cut(s) 993
Mox20I TGGCCA 1 cut(s) 99
MroI TCCGGA 1 cut(s) 952
MscI TGGCCA 1 cut(s) 99
MseI TTAA 5 cut(s) 164, 312, 336, 399, 441
MslI CAYNNNNRTG 2 cut(s) 99, 830
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 906
MspI CCGG 1 cut(s) 953
MspR9I CCNGG 2 cut(s) 291, 874
MvaI CCWGG 2 cut(s) 291, 874
MwoI GCNNNNNNNGC 7 cut(s) 105, 111, 903, 909, 912, 1165, 1178
NcoI CCATGG 1 cut(s) 100
NdeII GATC 3 cut(s) 485, 984, 1201
NlaIII CATG 5 cut(s) 98, 104, 248, 614, 787
NlaIV GGNNCC 4 cut(s) 487, 619, 1030, 1124
OliI CACNNNNGTG 1 cut(s) 830
PceI AGGCCT 4 cut(s) 45, 187, 476, 637
PciSI GCTCTTC 1 cut(s) 146
PfeI GAWTC 2 cut(s) 552, 1076
PleI GAGTC 1 cut(s) 872
PmaCI CACGTG 1 cut(s) 830
PmlI CACGTG 1 cut(s) 830
PpsI GAGTC 1 cut(s) 872
Ppu21I YACGTR 1 cut(s) 830
PshBI ATTAAT 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 289, 872
PspCI CACGTG 1 cut(s) 830
PspGI CCWGG 2 cut(s) 289, 872
PspN4I GGNNCC 4 cut(s) 487, 619, 1030, 1124
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 2 cut(s) 161, 720
PsuI RGATCY 2 cut(s) 485, 1201
RsaI GTAC 2 cut(s) 656, 1193
RsaNI GTAC 2 cut(s) 655, 1192
RseI CAYNNNNRTG 2 cut(s) 99, 830
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 5 cut(s) 164, 312, 336, 399, 441
Sau3AI GATC 3 cut(s) 485, 984, 1201
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 2 cut(s) 291, 874
SduI GDGCHC 1 cut(s) 116
SfcI CTRYAG 2 cut(s) 157, 716
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 99, 830
Sse9I AATT 7 cut(s) 79, 125, 175, 226, 325, 688, 1054
SseBI AGGCCT 4 cut(s) 45, 187, 476, 637
SsiI CCGC 8 cut(s) 530, 722, 798, 810, 906, 909, 912, 959
SspI AATATT 2 cut(s) 409, 439
SstI GAGCTC 1 cut(s) 116
StuI AGGCCT 4 cut(s) 45, 187, 476, 637
StyD4I CCNGG 2 cut(s) 289, 872
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 780, 1103
TaiI ACGT 2 cut(s) 832, 1118
TaqI TCGA 1 cut(s) 921
TasI AATT 7 cut(s) 79, 125, 175, 226, 325, 688, 1054
TatI WGTACW 1 cut(s) 1191
TauI GCSGC 3 cut(s) 909, 912, 915
TfiI GAWTC 2 cut(s) 552, 1076
Tru1I TTAA 5 cut(s) 164, 312, 336, 399, 441
Tru9I TTAA 5 cut(s) 164, 312, 336, 399, 441
TscAI CASTG 1 cut(s) 519
TseI GCWGC 7 cut(s) 105, 156, 278, 594, 715, 903, 1159
TspDTI ATGAA 2 cut(s) 627, 1082
TspRI CASTG 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 441
XapI RAATTY 2 cut(s) 226, 325
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.