Rorug03G0031500
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015647
Physical Location & Seq
Forward (+)
2464129 .. 2473854
9726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0031500.1

Sequence Viewer

Length: 1041 bp
ATGGCTGAACAGAAGGAAGTACAGATCCCCAAGGTTAAACTTGGAACTCAAGGATTTGAGGTTTCAAAATTGGGGTTTGGATGCATGGGTTTGACTTTTGCCAAGTATCCTGGTGCTGAAGAGGATGGAATCTCCATTATAAAGCATGCCTTCAGTAAAGGAATCACGTTCTTTGACACATCTGATATATATGGAACTGATCATGCCAATGAAATTCTTGTTGGCAAGGCCTTGAAGCAGTTGCCAAGAGAGAAGGTTCAATTAGCCTCGAAGTTTGGTATTGTAAGCTTAGGACCTCCTCGTGTGGTGGTAAATGGAACTCCGGAGTATGTCCGGTCATGTTGCGAGGCTAGCTTGAAGCGTCTTGGTGTCGACTACATTGATCTCTACTATTATCACCGCATTGACCAAACGATGCCAATAGAGGAAACTATGGCTGAGCTGAAGAAACTTGTGGAAGAAGGAAAGATCAAGTACATTGGATTATCCGAAGCGAGTCCAGACACAATAAGGAGAGCACATGCAGTTCATCCCATCACAGCTATACAAATGGAGTGGTCACTTTGGACTCGTGATATTGAAGAAGAGATTATTCCACTTTGCAGGGAGCGTGGCATTGGAATAGTTCCATATAGTCCTCTGGGTCGTGGTTTTTTCGCAGGCAAAGCAGTTGTCGAAAGTTTGGATCCAAATGTTCTTGCGGCCGCACATCCTCGGCTCACTGGAGAGAACTTGGAGAAGAACAGACACATATACCATGCAATAGAACGCCTTGCTACAAAGCACCATTGCTCTCCTGCTCAACTAGCACTGTCGTGGGTTCTCCACCAAGGCGATGACGTTGTACCAATCCCCGGGACAACAAAGATTAAGAACTTGGATACCAACATTGGCTCCTTAAGTCTAAATCTCAAGGAAGACGACCTCAAAGAAATCTCTGATGCTGTTCCACTCGACCAAGTAGCTGGTGATAAGAGTTTTGAAAGCACGAGTCATGTGCAATGGAAATTCGCCAACACTCCTCAAAAGACTCTGAATTAG

Protein Analysis

346

Amino Acids

38.4

Weight (kDa)

6.2

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 314 1e-74 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015647)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08620
malus_domestica MD04G1184900.v1.1 MD12G1198600.v1.1
prunus_persica Prupe.6G303300_v2.0.a1
pyrus_communis pycom04g16420 pycom12g18500
rosa_chinensis RchiOBHm_Chr3g0458721
rosa_laevigata RLG00000025139
rosa_multiflora Rmu_sc0001634.1_g000020
rosa_roxburghii Rroxscaffold_6G00420840
rosa_rugosa Rorug03G0031500
rosa_samantha Rh3AG089100 Rh3BG091900 Rh3CG092300 Rh3DG093000
rosa_wichuraiana Rw3G007620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AccI GTMKAC 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 3 cut(s) 400, 701, 705
AclWI GGATC 3 cut(s) 19, 680, 693
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 2 cut(s) 213, 1007
AcuI CTGAAG 3 cut(s) 136, 138, 464
AfaI GTAC 3 cut(s) 21, 476, 846
AfiI CCNNNNNNNGG 1 cut(s) 854
AflII CTTAAG 1 cut(s) 898
AgsI TTSAA 6 cut(s) 66, 235, 260, 358, 581, 983
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AleI CACNNNNGTG 1 cut(s) 814
AluBI AGCT 5 cut(s) 288, 354, 442, 542, 965
AluI AGCT 5 cut(s) 288, 354, 442, 542, 965
Alw21I GWGCWC 1 cut(s) 520
AlwI GGATC 3 cut(s) 19, 680, 693
Ama87I CYCGRG 1 cut(s) 854
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 2 cut(s) 228, 702
ApoI RAATTY 2 cut(s) 213, 1007
ArsI GACNNNNNNTTYG 2 cut(s) 657, 689
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 2 cut(s) 855, 856
AsuHPI GGTGA 2 cut(s) 389, 980
AsuNHI GCTAGC 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 854
AvaII GGWCC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 685
BauI CACGAG 3 cut(s) 300, 570, 988
BbsI GAAGAC 1 cut(s) 924
Bbv12I GWGCWC 1 cut(s) 520
BccI CCATC 2 cut(s) 119, 542
BcgI CGANNNNNNTGC 2 cut(s) 979, 1013
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 2 cut(s) 117, 874
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 2 cut(s) 855, 856
BfaI CTAG 2 cut(s) 351, 806
BfrI CTTAAG 1 cut(s) 898
BfuI GTATCC 2 cut(s) 117, 874
BisI GCNGC 2 cut(s) 702, 705
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 2 cut(s) 703, 706
Bme1390I CCNGG 3 cut(s) 111, 855, 856
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 854
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 687, 895
BmrFI CCNGG 3 cut(s) 111, 855, 856
BmsI GCATC 3 cut(s) 71, 405, 931
BmtI GCTAGC 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 924
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 289
Bpu1102I GCTNAGC 1 cut(s) 438
BpuEI CTTGAG 2 cut(s) 33, 896
BpuMI CCSGG 2 cut(s) 855, 856
BsaJI CCNNGG 5 cut(s) 30, 713, 829, 853, 854
BsaWI WCCGGW 2 cut(s) 322, 333
BsaXI ACNNNNNCTCC 2 cut(s) 878, 908
Bsc4I CCNNNNNNNGG 1 cut(s) 854
Bse1I ACTGG 1 cut(s) 727
Bse3DI GCAATG 2 cut(s) 787, 1007
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 5 cut(s) 30, 713, 829, 853, 854
BseGI GGATG 4 cut(s) 86, 130, 529, 709
BseLI CCNNNNNNNGG 1 cut(s) 854
BseMI GCAATG 2 cut(s) 787, 1007
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 1 cut(s) 727
BseRI GAGGAG 2 cut(s) 288, 1011
BseX3I CGGCCG 1 cut(s) 702
Bsh1285I CGRYCG 1 cut(s) 705
BshFI GGCC 2 cut(s) 230, 704
BsiEI CGRYCG 1 cut(s) 705
BsiHKAI GWGCWC 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 854
BsiSI CCGG 3 cut(s) 323, 334, 855
BslFI GGGAC 1 cut(s) 871
BslI CCNNNNNNNGG 1 cut(s) 854
BsmFI GGGAC 1 cut(s) 871
BsnI GGCC 2 cut(s) 230, 704
BsoBI CYCGRG 1 cut(s) 854
Bsp1286I GDGCHC 1 cut(s) 520
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 5 cut(s) 24, 199, 382, 468, 685
Bsp1720I GCTNAGC 1 cut(s) 438
BspACI CCGC 3 cut(s) 400, 701, 705
BspANI GGCC 2 cut(s) 230, 704
BspCNI CTCAG 1 cut(s) 430
BspEI TCCGGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 687, 895
BspOI GCTAGC 1 cut(s) 354
BspPI GGATC 3 cut(s) 19, 680, 693
BspTI CTTAAG 1 cut(s) 898
BsrDI GCAATG 2 cut(s) 787, 1007
BsrI ACTGG 1 cut(s) 727
BssECI CCNNGG 5 cut(s) 30, 713, 829, 853, 854
BssMI GATC 5 cut(s) 24, 199, 382, 468, 685
BssSI CACGAG 3 cut(s) 300, 570, 988
BssT1I CCWWGG 2 cut(s) 30, 829
Bst2BI CACGAG 3 cut(s) 300, 570, 988
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 813
Bst6I CTCTTC 2 cut(s) 114, 579
BstAFI CTTAAG 1 cut(s) 898
BstC8I GCNNGC 3 cut(s) 147, 352, 661
BstDEI CTNAG 2 cut(s) 289, 438
BstF5I GGATG 4 cut(s) 86, 130, 529, 709
BstKTI GATC 5 cut(s) 27, 202, 385, 471, 688
BstMBI GATC 5 cut(s) 24, 199, 382, 468, 685
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 3 cut(s) 351, 665, 806
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 2 cut(s) 149, 524
BstSCI CCNGG 3 cut(s) 109, 853, 854
BstV2I GAAGAC 1 cut(s) 924
BstX2I RGATCY 2 cut(s) 24, 685
BstXI CCANNNNNNTGG 1 cut(s) 965
BstYI RGATCY 2 cut(s) 24, 685
BstZI CGGCCG 1 cut(s) 702
BsuI GTATCC 2 cut(s) 117, 874
BsuRI GGCC 2 cut(s) 230, 704
BtgZI GCGATG 1 cut(s) 849
BtsCI GGATG 4 cut(s) 86, 130, 529, 709
BtsIMutI CAGTG 2 cut(s) 720, 809
Cac8I GCNNGC 3 cut(s) 147, 352, 661
CciNI GCGGCCGC 1 cut(s) 702
Cfr13I GGNCC 1 cut(s) 293
Cfr9I CCCGGG 1 cut(s) 854
CseI GACGC 1 cut(s) 350
Csp6I GTAC 3 cut(s) 20, 475, 845
CspCI CAANNNNNGTGG 2 cut(s) 536, 571
CviAII CATG 7 cut(s) 85, 146, 203, 339, 521, 758, 995
CviQI GTAC 3 cut(s) 20, 475, 845
DdeI CTNAG 2 cut(s) 289, 438
DpnI GATC 5 cut(s) 26, 201, 384, 470, 687
DpnII GATC 5 cut(s) 24, 199, 382, 468, 685
EaeI YGGCCR 1 cut(s) 702
EagI CGGCCG 1 cut(s) 702
Eam1104I CTCTTC 2 cut(s) 114, 579
EarI CTCTTC 2 cut(s) 114, 579
EclXI CGGCCG 1 cut(s) 702
Eco130I CCWWGG 2 cut(s) 30, 829
Eco147I AGGCCT 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 293
Eco52I CGGCCG 1 cut(s) 702
Eco57I CTGAAG 3 cut(s) 136, 138, 464
Eco88I CYCGRG 1 cut(s) 854
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 30, 829
EcoT22I ATGCAT 1 cut(s) 86
ErhI CCWWGG 2 cut(s) 30, 829
FaeI CATG 7 cut(s) 88, 149, 206, 342, 524, 761, 998
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 871
FatI CATG 7 cut(s) 84, 145, 202, 338, 520, 757, 994
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 702, 705
FokI GGATG 4 cut(s) 93, 137, 516, 696
Fsp4HI GCNGC 2 cut(s) 702, 705
FspBI CTAG 2 cut(s) 351, 806
GluI GCNGC 2 cut(s) 702, 705
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 2 cut(s) 230, 704
HapII CCGG 3 cut(s) 323, 334, 855
HgaI GACGC 1 cut(s) 350
Hin1II CATG 7 cut(s) 88, 149, 206, 342, 524, 761, 998
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 6 cut(s) 129, 162, 496, 568, 991, 1030
HpaII CCGG 3 cut(s) 323, 334, 855
HphI GGTGA 2 cut(s) 389, 980
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 4 cut(s) 184, 490, 940, 1035
Hpy188III TCNNGA 3 cut(s) 323, 500, 572
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 4 cut(s) 7, 160, 247, 455
HpyCH4III ACNGT 1 cut(s) 813
HpyCH4IV ACGT 2 cut(s) 167, 840
HpyCH4V TGCA 5 cut(s) 84, 524, 603, 761, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 351, 665, 806
HpyF3I CTNAG 2 cut(s) 289, 438
HpySE526I ACGT 2 cut(s) 167, 840
Hsp92II CATG 7 cut(s) 88, 149, 206, 342, 524, 761, 998
Kpn2I TCCGGA 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 5 cut(s) 24, 199, 382, 468, 685
LmnI GCTCC 2 cut(s) 607, 899
LweI GCATC 3 cut(s) 71, 405, 931
MaeI CTAG 2 cut(s) 351, 806
MaeII ACGT 2 cut(s) 167, 840
MaeIII GTNAC 1 cut(s) 558
MalI GATC 5 cut(s) 26, 201, 384, 470, 687
MboI GATC 5 cut(s) 24, 199, 382, 468, 685
MboII GAAGA 7 cut(s) 131, 457, 470, 593, 596, 751, 929
MflI RGATCY 2 cut(s) 24, 685
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 5 cut(s) 68, 213, 260, 1007, 1036
MlyI GAGTC 4 cut(s) 505, 562, 1000, 1024
Mph1103I ATGCAT 1 cut(s) 86
MroI TCCGGA 1 cut(s) 322
MseI TTAA 3 cut(s) 36, 870, 899
MslI CAYNNNNRTG 2 cut(s) 207, 814
MspCI CTTAAG 1 cut(s) 898
MspI CCGG 3 cut(s) 323, 334, 855
MspR9I CCNGG 3 cut(s) 111, 855, 856
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 351, 665, 806
NciI CCSGG 2 cut(s) 855, 856
NdeII GATC 5 cut(s) 24, 199, 382, 468, 685
NheI GCTAGC 1 cut(s) 350
NlaIII CATG 7 cut(s) 88, 149, 206, 342, 524, 761, 998
NlaIV GGNNCC 2 cut(s) 687, 895
NmeAIII GCCGAG 1 cut(s) 694
NmuCI GTSAC 1 cut(s) 558
NotI GCGGCCGC 1 cut(s) 702
NsiI ATGCAT 1 cut(s) 86
NspI RCATGY 2 cut(s) 149, 524
OliI CACNNNNGTG 1 cut(s) 814
PaeI GCATGC 1 cut(s) 149
PceI AGGCCT 1 cut(s) 230
PfeI GAWTC 2 cut(s) 129, 162
PkrI GCNGC 2 cut(s) 703, 706
PleI GAGTC 4 cut(s) 504, 562, 999, 1024
PpsI GAGTC 4 cut(s) 504, 562, 999, 1024
PpuMI RGGWCCY 1 cut(s) 293
PsiI TTATAA 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 687, 895
PspPI GGNCC 1 cut(s) 293
PspPPI RGGWCCY 1 cut(s) 293
PsuI RGATCY 2 cut(s) 24, 685
RsaI GTAC 3 cut(s) 21, 476, 846
RsaNI GTAC 3 cut(s) 20, 475, 845
RseI CAYNNNNRTG 2 cut(s) 207, 814
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 3 cut(s) 36, 870, 899
SatI GCNGC 2 cut(s) 702, 705
Sau3AI GATC 5 cut(s) 24, 199, 382, 468, 685
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 4 cut(s) 505, 562, 1000, 1024
ScrFI CCNGG 3 cut(s) 111, 855, 856
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 3 cut(s) 71, 405, 931
SinI GGWCC 1 cut(s) 293
SmaI CCCGGG 1 cut(s) 856
SmiMI CAYNNNNRTG 2 cut(s) 207, 814
SmlI CTYRAG 3 cut(s) 48, 898, 911
SmoI CTYRAG 3 cut(s) 48, 898, 911
SphI GCATGC 1 cut(s) 149
Sse9I AATT 5 cut(s) 68, 213, 260, 1007, 1036
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 3 cut(s) 400, 701, 705
SspMI CTAG 2 cut(s) 351, 806
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 3 cut(s) 109, 853, 854
StyI CCWWGG 2 cut(s) 30, 829
TaaI ACNGT 1 cut(s) 813
TaiI ACGT 2 cut(s) 170, 843
TaqI TCGA 4 cut(s) 269, 372, 675, 954
TasI AATT 5 cut(s) 68, 213, 260, 1007, 1036
TatI WGTACW 2 cut(s) 19, 474
TauI GCSGC 2 cut(s) 704, 707
TfiI GAWTC 2 cut(s) 129, 162
Tru1I TTAA 3 cut(s) 36, 870, 899
Tru9I TTAA 3 cut(s) 36, 870, 899
TscAI CASTG 2 cut(s) 727, 816
TseFI GTSAC 1 cut(s) 558
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 2 cut(s) 225, 518
TspMI CCCGGG 1 cut(s) 854
TspRI CASTG 2 cut(s) 727, 816
Vha464I CTTAAG 1 cut(s) 898
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 2 cut(s) 213, 1007
XceI RCATGY 2 cut(s) 149, 524
XmaI CCCGGG 1 cut(s) 854
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 2 cut(s) 351, 806
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.