Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0015647

Physical Location & Seq

Genomic Coordinates Reverse (-)

19063492 .. 19064019

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGCTGCAGGCAGTAAATCAAAACACCACTTTCAGCTTCCTCAATCAAAATCCAGAGTTCCTGCAACCGTCCATGTCATCAAGCTCCGCCATATTCACCGCCCCTCCTCCTCCTCCCACACGTGTGAAGCCTTCCATCAGCCTCCCATCCGATAACTCCTCCACCTGGGACTCCAATGCCAACAACAGCAACAGCAGTGGCGGCGGCTACTTCGACAGCTCTGCAACCTTTTCTTGGTGGCCGCCGGAGGCGGTAAAATCCGACGACCCAGAAGAGATCAAATGGTCTGAATATCTCCACAACACCTCATTTCAGATGGGAACCCACCAAGCCTCTCAGCCTGCTACTTACTCAGAAATCAAACCAGAATCTCAGTCACACATTTTATCAAACAGCTTGAGCGCAACATCTTGGCACCACCAGAACCAGCAGCACCAGCACCAGCACCAGCAAGCTTTACAAGCTTCAGAGATGTACACAAAGGATCTTCAGAGACTTGCTGTATCTTTTGGTCAAACCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

176

Amino Acids

19.43

Weight (kDa)

5.47

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08620
malus_domestica	MD04G1184900.v1.1 MD12G1198600.v1.1
prunus_persica	Prupe.6G303300_v2.0.a1
pyrus_communis	pycom04g16420 pycom12g18500
rosa_chinensis	RchiOBHm_Chr3g0458721
rosa_laevigata	RLG00000025139
rosa_multiflora	Rmu_sc0001634.1_g000020
rosa_roxburghii	Rroxscaffold_6G00420840
rosa_rugosa	Rorug03G0031500
rosa_samantha	Rh3AG089100 Rh3BG091900 Rh3CG092300 Rh3DG093000
rosa_wichuraiana	Rw3G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	417
AciI	CCGC	6 cut(s)	90, 102, 204, 207, 245, 254
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	242
AcuI	CTGAAG	2 cut(s)	453, 476
AcvI	CACGTG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	2 cut(s)	168, 237
AflIII	ACRYGT	2 cut(s)	122, 124
AjnI	CCWGG	1 cut(s)	167
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	6 cut(s)	39, 87, 222, 399, 458, 467
AluI	AGCT	6 cut(s)	39, 87, 222, 399, 458, 467
Alw26I	GTCTC	1 cut(s)	490
AlwI	GGATC	1 cut(s)	495
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	7, 433
AspLEI	GCGC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	417
BbrPI	CACGTG	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	3 cut(s)	146, 157, 313
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	490
BfmI	CTRYAG	1 cut(s)	8
BisI	GCNGC	5 cut(s)	8, 205, 208, 245, 434
BlsI	GCNGC	5 cut(s)	9, 206, 209, 246, 435
Bme1390I	CCNGG	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	325, 419
BmrFI	CCNGG	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 237
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	168, 237
BseMII	CTCAG	3 cut(s)	353, 369, 389
BseRI	GAGGAG	4 cut(s)	99, 102, 105, 151
BseXI	GCAGC	1 cut(s)	445
BshFI	GGCC	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	168, 237
BsmAI	GTCTC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	279, 487
BspACI	CCGC	6 cut(s)	90, 102, 204, 207, 245, 254
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	3 cut(s)	352, 368, 388
BspLI	GGNNCC	2 cut(s)	325, 419
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	417
BsrGI	TGTACA	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	279, 487
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	270
BstAUI	TGTACA	1 cut(s)	477
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	12, 345, 456
BstDEI	CTNAG	3 cut(s)	339, 355, 375
BstF5I	GGATG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	2 cut(s)	282, 490
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	2 cut(s)	279, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 439, 464
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	3 cut(s)	12, 345, 456
CfoI	GCGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	478
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	3 cut(s)	339, 355, 375
DpnI	GATC	2 cut(s)	281, 489
DpnII	GATC	2 cut(s)	279, 487
EaeI	YGGCCR	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	453, 476
Eco72I	CACGTG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	79
FaiI	YATR	2 cut(s)	77, 95
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	5 cut(s)	8, 205, 208, 245, 434
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	5 cut(s)	8, 205, 208, 245, 434
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	5 cut(s)	8, 205, 208, 245, 434
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	1 cut(s)	248
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HindIII	AAGCTT	2 cut(s)	456, 465
HinfI	GANTC	2 cut(s)	173, 371
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	7 cut(s)	154, 265, 292, 318, 358, 472, 495
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	10, 67, 227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 439, 464
HpyF3I	CTNAG	3 cut(s)	339, 355, 375
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	279, 487
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	1 cut(s)	445
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	2 cut(s)	281, 489
MboI	GATC	2 cut(s)	279, 487
MboII	GAAGA	2 cut(s)	287, 482
MflI	RGATCY	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	204, 439, 464
NdeII	GATC	2 cut(s)	279, 487
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	325, 419
NmuCI	GTSAC	1 cut(s)	378
OliI	CACNNNNGTG	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	5 cut(s)	9, 206, 209, 246, 435
PleI	GAGTC	1 cut(s)	167
PmaCI	CACGTG	1 cut(s)	125
PmlI	CACGTG	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	167
PspCI	CACGTG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	325, 419
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	487
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	125
SatI	GCNGC	5 cut(s)	8, 205, 208, 245, 434
Sau3AI	GATC	2 cut(s)	279, 487
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SsiI	CCGC	6 cut(s)	90, 102, 204, 207, 245, 254
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	216
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	3 cut(s)	207, 210, 247
TfiI	GAWTC	1 cut(s)	371
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	2 cut(s)	7, 433
Tsp45I	GTSAC	1 cut(s)	378
TspRI	CASTG	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.