Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g08620 |
| malus_domestica | MD04G1184900.v1.1 MD12G1198600.v1.1 |
| prunus_persica | Prupe.6G303300_v2.0.a1 |
| pyrus_communis | pycom04g16420 pycom12g18500 |
| rosa_chinensis | RchiOBHm_Chr3g0458721 |
| rosa_laevigata | RLG00000025139 |
| rosa_multiflora | Rmu_sc0001634.1_g000020 |
| rosa_roxburghii | Rroxscaffold_6G00420840 |
| rosa_rugosa | Rorug03G0031500 |
| rosa_samantha | Rh3AG089100 Rh3BG091900 Rh3CG092300 Rh3DG093000 |
| rosa_wichuraiana | Rw3G007620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 150 |
| Acc65I | GGTACC | 1 cut(s) | 543 |
| AccB1I | GGYRCC | 1 cut(s) | 543 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1224 |
| AciI | CCGC | 4 cut(s) | 278, 349, 981, 1002 |
| AclWI | GGATC | 5 cut(s) | 477, 490, 800, 1201, 1293 |
| AcoI | YGGCCR | 1 cut(s) | 97 |
| AcsI | RAATTY | 4 cut(s) | 226, 325, 517, 712 |
| AcuI | CTGAAG | 3 cut(s) | 78, 1251, 1274 |
| AcvI | CACGTG | 1 cut(s) | 896 |
| AfaI | GTAC | 7 cut(s) | 545, 832, 844, 1150, 1175, 1204, 1277 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 553, 660, 1224 |
| AflIII | ACRYGT | 2 cut(s) | 893, 895 |
| AgsI | TTSAA | 2 cut(s) | 196, 506 |
| AhlI | ACTAGT | 2 cut(s) | 833, 1205 |
| AjnI | CCWGG | 1 cut(s) | 791 |
| AleI | CACNNNNGTG | 1 cut(s) | 896 |
| Alw21I | GWGCWC | 1 cut(s) | 116 |
| Alw26I | GTCTC | 6 cut(s) | 57, 273, 441, 562, 946, 1288 |
| AlwI | GGATC | 5 cut(s) | 477, 490, 800, 1201, 1293 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 398 |
| AoxI | GGCC | 7 cut(s) | 43, 97, 133, 185, 662, 1226, 1245 |
| ApeKI | GCWGC | 6 cut(s) | 156, 346, 463, 620, 998, 1211 |
| ApoI | RAATTY | 4 cut(s) | 226, 325, 517, 712 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 704, 736 |
| Asp718I | GGTACC | 1 cut(s) | 543 |
| AspS9I | GGNCC | 4 cut(s) | 203, 297, 795, 949 |
| AsuC2I | CCSGG | 1 cut(s) | 291 |
| AsuHPI | GGTGA | 1 cut(s) | 692 |
| AsuII | TTCGAA | 1 cut(s) | 521 |
| AvaII | GGWCC | 4 cut(s) | 203, 297, 795, 949 |
| AxyI | CCTNAGG | 1 cut(s) | 182 |
| BalI | TGGCCA | 1 cut(s) | 99 |
| BamHI | GGATCC | 1 cut(s) | 482 |
| BanI | GGYRCC | 1 cut(s) | 543 |
| BanII | GRGCYC | 3 cut(s) | 116, 744, 1020 |
| BbrPI | CACGTG | 1 cut(s) | 896 |
| BbsI | GAAGAC | 1 cut(s) | 908 |
| Bbv12I | GWGCWC | 1 cut(s) | 116 |
| BbvI | GCAGC | 6 cut(s) | 143, 333, 475, 607, 1010, 1223 |
| BccI | CCATC | 1 cut(s) | 1093 |
| BceAI | ACGGC | 1 cut(s) | 494 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 977, 1011 |
| BciT130I | CCWGG | 1 cut(s) | 793 |
| BclI | TGATCA | 1 cut(s) | 409 |
| BcnI | CCSGG | 1 cut(s) | 291 |
| BcoDI | GTCTC | 6 cut(s) | 57, 273, 441, 562, 946, 1288 |
| BcuI | ACTAGT | 2 cut(s) | 833, 1205 |
| BfaI | CTAG | 2 cut(s) | 834, 1206 |
| BfmI | CTRYAG | 5 cut(s) | 157, 658, 967, 996, 1302 |
| BfuAI | ACCTGC | 1 cut(s) | 150 |
| BisI | GCNGC | 9 cut(s) | 157, 279, 347, 350, 464, 621, 999, 1002, 1212 |
| BlsI | GCNGC | 9 cut(s) | 158, 280, 348, 351, 465, 622, 1000, 1003, 1213 |
| BmcAI | AGTACT | 4 cut(s) | 832, 1150, 1175, 1204 |
| Bme1390I | CCNGG | 2 cut(s) | 291, 793 |
| Bme18I | GGWCC | 4 cut(s) | 203, 297, 795, 949 |
| BmgT120I | GGNCC | 4 cut(s) | 203, 297, 795, 949 |
| BmiI | GGNNCC | 4 cut(s) | 484, 545, 643, 950 |
| BmrFI | CCNGG | 2 cut(s) | 291, 793 |
| BmrI | ACTGGG | 1 cut(s) | 542 |
| BmsI | GCATC | 1 cut(s) | 706 |
| BmuI | ACTGGG | 1 cut(s) | 542 |
| BpiI | GAAGAC | 1 cut(s) | 908 |
| BpmI | CTGGAG | 1 cut(s) | 775 |
| Bpu10I | CCTNAGC | 1 cut(s) | 35 |
| Bpu14I | TTCGAA | 1 cut(s) | 521 |
| BpuEI | CTTGAG | 1 cut(s) | 582 |
| BpuMI | CCSGG | 1 cut(s) | 291 |
| BsaAI | YACGTR | 1 cut(s) | 896 |
| BsaI | GGTCTC | 3 cut(s) | 57, 273, 562 |
| BsaJI | CCNNGG | 2 cut(s) | 100, 735 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 553, 660, 1224 |
| Bse118I | RCCGGY | 2 cut(s) | 962, 1247 |
| Bse1I | ACTGG | 5 cut(s) | 548, 567, 706, 952, 957 |
| Bse21I | CCTNAGG | 1 cut(s) | 182 |
| BseBI | CCWGG | 1 cut(s) | 793 |
| BseDI | CCNNGG | 2 cut(s) | 100, 735 |
| BseGI | GGATG | 1 cut(s) | 722 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 553, 660, 1224 |
| BseMII | CTCAG | 6 cut(s) | 129, 173, 284, 402, 741, 1065 |
| BseNI | ACTGG | 5 cut(s) | 548, 567, 706, 952, 957 |
| BseXI | GCAGC | 6 cut(s) | 143, 333, 475, 607, 1010, 1223 |
| BsgI | GTGCAG | 1 cut(s) | 1230 |
| BshFI | GGCC | 7 cut(s) | 45, 99, 135, 187, 664, 1228, 1247 |
| BshNI | GGYRCC | 1 cut(s) | 543 |
| BsiHKAI | GWGCWC | 1 cut(s) | 116 |
| BsiSI | CCGG | 3 cut(s) | 291, 963, 1248 |
| BslFI | GGGAC | 2 cut(s) | 104, 962 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 553, 660, 1224 |
| BsmAI | GTCTC | 6 cut(s) | 57, 273, 441, 562, 946, 1288 |
| BsmFI | GGGAC | 2 cut(s) | 104, 962 |
| BsmI | GAATGC | 1 cut(s) | 10 |
| BsnI | GGCC | 7 cut(s) | 45, 99, 135, 187, 664, 1228, 1247 |
| Bso31I | GGTCTC | 3 cut(s) | 57, 273, 562 |
| Bsp119I | TTCGAA | 1 cut(s) | 521 |
| Bsp1286I | GDGCHC | 3 cut(s) | 116, 744, 1020 |
| Bsp1407I | TGTACA | 1 cut(s) | 1275 |
| Bsp143I | GATC | 6 cut(s) | 309, 409, 482, 805, 1193, 1285 |
| Bsp19I | CCATGG | 2 cut(s) | 100, 735 |
| BspACI | CCGC | 4 cut(s) | 278, 349, 981, 1002 |
| BspANI | GGCC | 7 cut(s) | 45, 99, 135, 187, 664, 1228, 1247 |
| BspCNI | CTCAG | 6 cut(s) | 128, 174, 283, 401, 740, 1066 |
| BspHI | TCATGA | 1 cut(s) | 1179 |
| BspLI | GGNNCC | 4 cut(s) | 484, 545, 643, 950 |
| BspMAI | CTGCAG | 3 cut(s) | 161, 662, 1000 |
| BspMI | ACCTGC | 1 cut(s) | 150 |
| BspPI | GGATC | 5 cut(s) | 477, 490, 800, 1201, 1293 |
| BspQI | GCTCTTC | 1 cut(s) | 146 |
| BspT104I | TTCGAA | 1 cut(s) | 521 |
| BspT107I | GGYRCC | 1 cut(s) | 543 |
| BspTNI | GGTCTC | 3 cut(s) | 57, 273, 562 |
| BsrFI | RCCGGY | 2 cut(s) | 962, 1247 |
| BsrGI | TGTACA | 1 cut(s) | 1275 |
| BsrI | ACTGG | 5 cut(s) | 548, 567, 706, 952, 957 |
| BssAI | RCCGGY | 2 cut(s) | 962, 1247 |
| BssECI | CCNNGG | 2 cut(s) | 100, 735 |
| BssMI | GATC | 6 cut(s) | 309, 409, 482, 805, 1193, 1285 |
| BssT1I | CCWWGG | 2 cut(s) | 100, 735 |
| Bst2UI | CCWGG | 1 cut(s) | 793 |
| Bst4CI | ACNGT | 4 cut(s) | 940, 971, 1148, 1173 |
| Bst6I | CTCTTC | 6 cut(s) | 146, 191, 216, 565, 1050, 1270 |
| BstAUI | TGTACA | 1 cut(s) | 1275 |
| BstBAI | YACGTR | 1 cut(s) | 896 |
| BstBI | TTCGAA | 1 cut(s) | 521 |
| BstC8I | GCNNGC | 7 cut(s) | 129, 133, 431, 662, 881, 964, 1245 |
| BstDEI | CTNAG | 8 cut(s) | 35, 90, 115, 182, 270, 388, 727, 1074 |
| BstDSI | CCRYGG | 2 cut(s) | 100, 735 |
| BstF5I | GGATG | 1 cut(s) | 722 |
| BstKTI | GATC | 6 cut(s) | 312, 412, 485, 808, 1196, 1288 |
| BstMAI | GTCTC | 6 cut(s) | 57, 273, 441, 562, 946, 1288 |
| BstMBI | GATC | 6 cut(s) | 309, 409, 482, 805, 1193, 1285 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 111, 1030 |
| BstNI | CCWGG | 1 cut(s) | 793 |
| BstSCI | CCNGG | 2 cut(s) | 289, 791 |
| BstSFI | CTRYAG | 5 cut(s) | 157, 658, 967, 996, 1302 |
| BstV1I | GCAGC | 6 cut(s) | 143, 333, 475, 607, 1010, 1223 |
| BstV2I | GAAGAC | 1 cut(s) | 908 |
| BstX2I | RGATCY | 2 cut(s) | 482, 1285 |
| BstYI | RGATCY | 2 cut(s) | 482, 1285 |
| Bsu36I | CCTNAGG | 1 cut(s) | 182 |
| BsuRI | GGCC | 7 cut(s) | 45, 99, 135, 187, 664, 1228, 1247 |
| BtgI | CCRYGG | 2 cut(s) | 100, 735 |
| BtsCI | GGATG | 1 cut(s) | 722 |
| BtsI | GCAGTG | 1 cut(s) | 993 |
| BtsIMutI | CAGTG | 3 cut(s) | 936, 964, 993 |
| BveI | ACCTGC | 1 cut(s) | 150 |
| Cac8I | GCNNGC | 7 cut(s) | 129, 133, 431, 662, 881, 964, 1245 |
| CaiI | CAGNNNCTG | 1 cut(s) | 398 |
| CciI | TCATGA | 1 cut(s) | 1179 |
| Cfr10I | RCCGGY | 2 cut(s) | 962, 1247 |
| Cfr13I | GGNCC | 4 cut(s) | 203, 297, 795, 949 |
| Csp6I | GTAC | 7 cut(s) | 544, 831, 843, 1149, 1174, 1203, 1276 |
| CviAII | CATG | 8 cut(s) | 95, 101, 635, 736, 868, 945, 1021, 1180 |
| CviQI | GTAC | 7 cut(s) | 544, 831, 843, 1149, 1174, 1203, 1276 |
| DdeI | CTNAG | 8 cut(s) | 35, 90, 115, 182, 270, 388, 727, 1074 |
| DpnI | GATC | 6 cut(s) | 311, 411, 484, 807, 1195, 1287 |
| DpnII | GATC | 6 cut(s) | 309, 409, 482, 805, 1193, 1285 |
| EaeI | YGGCCR | 1 cut(s) | 97 |
| Eam1104I | CTCTTC | 6 cut(s) | 146, 191, 216, 565, 1050, 1270 |
| EarI | CTCTTC | 6 cut(s) | 146, 191, 216, 565, 1050, 1270 |
| Ecl136II | GAGCTC | 1 cut(s) | 114 |
| Eco130I | CCWWGG | 2 cut(s) | 100, 735 |
| Eco147I | AGGCCT | 4 cut(s) | 45, 135, 187, 664 |
| Eco24I | GRGCYC | 3 cut(s) | 116, 744, 1020 |
| Eco31I | GGTCTC | 3 cut(s) | 57, 273, 562 |
| Eco47I | GGWCC | 4 cut(s) | 203, 297, 795, 949 |
| Eco53kI | GAGCTC | 1 cut(s) | 114 |
| Eco57I | CTGAAG | 3 cut(s) | 78, 1251, 1274 |
| Eco72I | CACGTG | 1 cut(s) | 896 |
| Eco81I | CCTNAGG | 1 cut(s) | 182 |
| EcoICRI | GAGCTC | 1 cut(s) | 114 |
| EcoRI | GAATTC | 2 cut(s) | 325, 517 |
| EcoRII | CCWGG | 1 cut(s) | 791 |
| EcoT14I | CCWWGG | 2 cut(s) | 100, 735 |
| EcoT38I | GRGCYC | 3 cut(s) | 116, 744, 1020 |
| ErhI | CCWWGG | 2 cut(s) | 100, 735 |
| FaeI | CATG | 8 cut(s) | 98, 104, 638, 739, 871, 948, 1024, 1183 |
| FaqI | GGGAC | 2 cut(s) | 104, 962 |
| FatI | CATG | 8 cut(s) | 94, 100, 634, 735, 867, 944, 1020, 1179 |
| FauI | CCCGC | 1 cut(s) | 974 |
| FbaI | TGATCA | 1 cut(s) | 409 |
| Fnu4HI | GCNGC | 9 cut(s) | 157, 279, 347, 350, 464, 621, 999, 1002, 1212 |
| FokI | GGATG | 1 cut(s) | 709 |
| FriOI | GRGCYC | 3 cut(s) | 116, 744, 1020 |
| Fsp4HI | GCNGC | 9 cut(s) | 157, 279, 347, 350, 464, 621, 999, 1002, 1212 |
| FspBI | CTAG | 2 cut(s) | 834, 1206 |
| GluI | GCNGC | 9 cut(s) | 157, 279, 347, 350, 464, 621, 999, 1002, 1212 |
| GsuI | CTGGAG | 1 cut(s) | 775 |
| HaeIII | GGCC | 7 cut(s) | 45, 99, 135, 187, 664, 1228, 1247 |
| HapII | CCGG | 3 cut(s) | 291, 963, 1248 |
| Hin1II | CATG | 8 cut(s) | 98, 104, 638, 739, 871, 948, 1024, 1183 |
| HindIII | AAGCTT | 3 cut(s) | 32, 71, 125 |
| HinfI | GANTC | 2 cut(s) | 316, 1296 |
| HpaII | CCGG | 3 cut(s) | 291, 963, 1248 |
| HphI | GGTGA | 1 cut(s) | 692 |
| Hpy166II | GTNNAC | 3 cut(s) | 754, 845, 1278 |
| Hpy188III | TCNNGA | 4 cut(s) | 56, 313, 599, 1180 |
| Hpy8I | GTNNAC | 3 cut(s) | 754, 845, 1278 |
| Hpy99I | CGWCG | 2 cut(s) | 1049, 1052 |
| HpyAV | CCTTC | 4 cut(s) | 288, 632, 675, 915 |
| HpyCH4III | ACNGT | 4 cut(s) | 940, 971, 1148, 1173 |
| HpyCH4IV | ACGT | 2 cut(s) | 895, 1050 |
| HpyCH4V | TGCA | 8 cut(s) | 131, 159, 333, 660, 749, 998, 1117, 1211 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 111, 1030 |
| HpyF3I | CTNAG | 8 cut(s) | 35, 90, 115, 182, 270, 388, 727, 1074 |
| HpySE526I | ACGT | 2 cut(s) | 895, 1050 |
| Hsp92II | CATG | 8 cut(s) | 98, 104, 638, 739, 871, 948, 1024, 1183 |
| KpnI | GGTACC | 1 cut(s) | 547 |
| KroI | GCCGGC | 1 cut(s) | 962 |
| KroNI | GCCGGC | 1 cut(s) | 964 |
| Ksp22I | TGATCA | 1 cut(s) | 409 |
| Kzo9I | GATC | 6 cut(s) | 309, 409, 482, 805, 1193, 1285 |
| LguI | GCTCTTC | 1 cut(s) | 146 |
| LmnI | GCTCC | 3 cut(s) | 111, 647, 1103 |
| Lsp1109I | GCAGC | 6 cut(s) | 143, 333, 475, 607, 1010, 1223 |
| LweI | GCATC | 1 cut(s) | 706 |
| MaeI | CTAG | 2 cut(s) | 834, 1206 |
| MaeII | ACGT | 2 cut(s) | 895, 1050 |
| MaeIII | GTNAC | 2 cut(s) | 971, 1250 |
| MalI | GATC | 6 cut(s) | 311, 411, 484, 807, 1195, 1287 |
| MboI | GATC | 6 cut(s) | 309, 409, 482, 805, 1193, 1285 |
| MflI | RGATCY | 2 cut(s) | 482, 1285 |
| MhlI | GDGCHC | 3 cut(s) | 116, 744, 1020 |
| MlsI | TGGCCA | 1 cut(s) | 99 |
| MluCI | AATT | 8 cut(s) | 79, 226, 234, 284, 325, 517, 712, 928 |
| MluNI | TGGCCA | 1 cut(s) | 99 |
| MlyI | GAGTC | 1 cut(s) | 1290 |
| MmeI | TCCRAC | 5 cut(s) | 89, 464, 510, 822, 1068 |
| Mox20I | TGGCCA | 1 cut(s) | 99 |
| MroNI | GCCGGC | 1 cut(s) | 962 |
| MscI | TGGCCA | 1 cut(s) | 99 |
| MseI | TTAA | 3 cut(s) | 336, 1062, 1324 |
| MslI | CAYNNNNRTG | 2 cut(s) | 99, 896 |
| Msp20I | TGGCCA | 1 cut(s) | 99 |
| MspA1I | CMGCKG | 1 cut(s) | 433 |
| MspI | CCGG | 3 cut(s) | 291, 963, 1248 |
| MspR9I | CCNGG | 2 cut(s) | 291, 793 |
| Mva1269I | GAATGC | 1 cut(s) | 10 |
| MvaI | CCWGG | 1 cut(s) | 793 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 111, 1030 |
| NaeI | GCCGGC | 1 cut(s) | 964 |
| NciI | CCSGG | 1 cut(s) | 291 |
| NcoI | CCATGG | 2 cut(s) | 100, 735 |
| NdeII | GATC | 6 cut(s) | 309, 409, 482, 805, 1193, 1285 |
| NgoMIV | GCCGGC | 1 cut(s) | 962 |
| NlaIII | CATG | 8 cut(s) | 98, 104, 638, 739, 871, 948, 1024, 1183 |
| NlaIV | GGNNCC | 4 cut(s) | 484, 545, 643, 950 |
| NspV | TTCGAA | 1 cut(s) | 521 |
| OliI | CACNNNNGTG | 1 cut(s) | 896 |
| PagI | TCATGA | 1 cut(s) | 1179 |
| PceI | AGGCCT | 4 cut(s) | 45, 135, 187, 664 |
| PciSI | GCTCTTC | 1 cut(s) | 146 |
| PctI | GAATGC | 1 cut(s) | 10 |
| PdiI | GCCGGC | 1 cut(s) | 964 |
| PfeI | GAWTC | 1 cut(s) | 316 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1224 |
| PkrI | GCNGC | 9 cut(s) | 158, 280, 348, 351, 465, 622, 1000, 1003, 1213 |
| PleI | GAGTC | 1 cut(s) | 1290 |
| PmaCI | CACGTG | 1 cut(s) | 896 |
| PmlI | CACGTG | 1 cut(s) | 896 |
| PpsI | GAGTC | 1 cut(s) | 1290 |
| Ppu21I | YACGTR | 1 cut(s) | 896 |
| Psp124BI | GAGCTC | 1 cut(s) | 116 |
| Psp6I | CCWGG | 1 cut(s) | 791 |
| PspCI | CACGTG | 1 cut(s) | 896 |
| PspGI | CCWGG | 1 cut(s) | 791 |
| PspN4I | GGNNCC | 4 cut(s) | 484, 545, 643, 950 |
| PspPI | GGNCC | 4 cut(s) | 203, 297, 795, 949 |
| PstI | CTGCAG | 3 cut(s) | 161, 662, 1000 |
| PstNI | CAGNNNCTG | 1 cut(s) | 398 |
| PsuI | RGATCY | 2 cut(s) | 482, 1285 |
| PvuII | CAGCTG | 1 cut(s) | 433 |
| RsaI | GTAC | 7 cut(s) | 545, 832, 844, 1150, 1175, 1204, 1277 |
| RsaNI | GTAC | 7 cut(s) | 544, 831, 843, 1149, 1174, 1203, 1276 |
| RseI | CAYNNNNRTG | 2 cut(s) | 99, 896 |
| SacI | GAGCTC | 1 cut(s) | 116 |
| SapI | GCTCTTC | 1 cut(s) | 146 |
| SaqAI | TTAA | 3 cut(s) | 336, 1062, 1324 |
| SatI | GCNGC | 9 cut(s) | 157, 279, 347, 350, 464, 621, 999, 1002, 1212 |
| Sau3AI | GATC | 6 cut(s) | 309, 409, 482, 805, 1193, 1285 |
| Sau96I | GGNCC | 4 cut(s) | 203, 297, 795, 949 |
| ScaI | AGTACT | 4 cut(s) | 832, 1150, 1175, 1204 |
| SchI | GAGTC | 1 cut(s) | 1290 |
| ScrFI | CCNGG | 2 cut(s) | 291, 793 |
| SduI | GDGCHC | 3 cut(s) | 116, 744, 1020 |
| SfaNI | GCATC | 1 cut(s) | 706 |
| SfcI | CTRYAG | 5 cut(s) | 157, 658, 967, 996, 1302 |
| SfuI | TTCGAA | 1 cut(s) | 521 |
| SinI | GGWCC | 4 cut(s) | 203, 297, 795, 949 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 99, 896 |
| SmlI | CTYRAG | 1 cut(s) | 597 |
| SmoI | CTYRAG | 1 cut(s) | 597 |
| SpeI | ACTAGT | 2 cut(s) | 833, 1205 |
| Sse9I | AATT | 8 cut(s) | 79, 226, 234, 284, 325, 517, 712, 928 |
| SseBI | AGGCCT | 4 cut(s) | 45, 135, 187, 664 |
| SsiI | CCGC | 4 cut(s) | 278, 349, 981, 1002 |
| SspMI | CTAG | 2 cut(s) | 834, 1206 |
| SstI | GAGCTC | 1 cut(s) | 116 |
| StuI | AGGCCT | 4 cut(s) | 45, 135, 187, 664 |
| StyD4I | CCNGG | 2 cut(s) | 289, 791 |
| StyI | CCWWGG | 2 cut(s) | 100, 735 |
| TaaI | ACNGT | 4 cut(s) | 940, 971, 1148, 1173 |
| TaiI | ACGT | 2 cut(s) | 898, 1053 |
| TaqI | TCGA | 3 cut(s) | 521, 710, 987 |
| TaqII | GACCGA | 1 cut(s) | 314 |
| TasI | AATT | 8 cut(s) | 79, 226, 234, 284, 325, 517, 712, 928 |
| TatI | WGTACW | 6 cut(s) | 830, 842, 1148, 1173, 1202, 1275 |
| TauI | GCSGC | 3 cut(s) | 281, 352, 1004 |
| TfiI | GAWTC | 1 cut(s) | 316 |
| Tru1I | TTAA | 3 cut(s) | 336, 1062, 1324 |
| Tru9I | TTAA | 3 cut(s) | 336, 1062, 1324 |
| TscAI | CASTG | 3 cut(s) | 943, 964, 1000 |
| TseI | GCWGC | 6 cut(s) | 156, 346, 463, 620, 998, 1211 |
| TspDTI | ATGAA | 3 cut(s) | 598, 651, 1168 |
| TspGWI | ACGGA | 1 cut(s) | 1128 |
| TspRI | CASTG | 3 cut(s) | 943, 964, 1000 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1224 |
| VpaK11BI | GGWCC | 4 cut(s) | 203, 297, 795, 949 |
| XapI | RAATTY | 4 cut(s) | 226, 325, 517, 712 |
| XspI | CTAG | 2 cut(s) | 834, 1206 |
| ZrmI | AGTACT | 4 cut(s) | 832, 1150, 1175, 1204 |