Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g08620 |
| malus_domestica | MD04G1184900.v1.1 MD12G1198600.v1.1 |
| prunus_persica | Prupe.6G303300_v2.0.a1 |
| pyrus_communis | pycom04g16420 pycom12g18500 |
| rosa_chinensis | RchiOBHm_Chr3g0458721 |
| rosa_laevigata | RLG00000025139 |
| rosa_multiflora | Rmu_sc0001634.1_g000020 |
| rosa_roxburghii | Rroxscaffold_6G00420840 |
| rosa_rugosa | Rorug03G0031500 |
| rosa_samantha | Rh3AG089100 Rh3BG091900 Rh3CG092300 Rh3DG093000 |
| rosa_wichuraiana | Rw3G007620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 520 |
| Acc36I | ACCTGC | 3 cut(s) | 122, 150, 520 |
| Acc65I | GGTACC | 1 cut(s) | 531 |
| AccB1I | GGYRCC | 2 cut(s) | 531, 1299 |
| AccI | GTMKAC | 2 cut(s) | 136, 834 |
| AciI | CCGC | 1 cut(s) | 1176 |
| AclWI | GGATC | 3 cut(s) | 475, 757, 1356 |
| AcsI | RAATTY | 5 cut(s) | 226, 316, 325, 499, 607 |
| AcuI | CTGAAG | 4 cut(s) | 823, 958, 1314, 1337 |
| AcvI | CACGTG | 1 cut(s) | 914 |
| AfaI | GTAC | 4 cut(s) | 396, 533, 661, 1342 |
| AfeI | AGCGCT | 1 cut(s) | 1066 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 528, 535, 541 |
| AflIII | ACRYGT | 2 cut(s) | 911, 913 |
| AgeI | ACCGGT | 2 cut(s) | 528, 829 |
| AgsI | TTSAA | 6 cut(s) | 196, 504, 1205, 1272, 1293, 1325 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 858 |
| AjnI | CCWGG | 2 cut(s) | 289, 645 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1305, 1337 |
| AleI | CACNNNNGTG | 1 cut(s) | 914 |
| Alw21I | GWGCWC | 1 cut(s) | 116 |
| Alw26I | GTCTC | 5 cut(s) | 57, 273, 343, 523, 1351 |
| AlwI | GGATC | 3 cut(s) | 475, 757, 1356 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1097 |
| Aor51HI | AGCGCT | 1 cut(s) | 1066 |
| AoxI | GGCC | 5 cut(s) | 43, 185, 202, 695, 1084 |
| ApoI | RAATTY | 5 cut(s) | 226, 316, 325, 499, 607 |
| AsiGI | ACCGGT | 2 cut(s) | 528, 829 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 971 |
| Asp718I | GGTACC | 1 cut(s) | 531 |
| AspLEI | GCGC | 1 cut(s) | 1067 |
| AspS9I | GGNCC | 4 cut(s) | 203, 562, 696, 1084 |
| AsuC2I | CCSGG | 1 cut(s) | 536 |
| AsuHPI | GGTGA | 1 cut(s) | 79 |
| AsuII | TTCGAA | 1 cut(s) | 965 |
| AsuNHI | GCTAGC | 2 cut(s) | 127, 763 |
| AvaII | GGWCC | 1 cut(s) | 562 |
| AxyI | CCTNAGG | 2 cut(s) | 57, 182 |
| BanI | GGYRCC | 2 cut(s) | 531, 1299 |
| BanII | GRGCYC | 1 cut(s) | 116 |
| BbrPI | CACGTG | 1 cut(s) | 914 |
| BbsI | GAAGAC | 2 cut(s) | 807, 854 |
| Bbv12I | GWGCWC | 1 cut(s) | 116 |
| BbvCI | CCTCAGC | 1 cut(s) | 489 |
| BccI | CCATC | 5 cut(s) | 258, 935, 1153, 1197, 1311 |
| BciT130I | CCWGG | 2 cut(s) | 291, 647 |
| BclI | TGATCA | 2 cut(s) | 400, 1228 |
| BcnI | CCSGG | 1 cut(s) | 536 |
| BcoDI | GTCTC | 5 cut(s) | 57, 273, 343, 523, 1351 |
| BfaI | CTAG | 3 cut(s) | 128, 764, 846 |
| BfmI | CTRYAG | 3 cut(s) | 513, 1068, 1365 |
| BfoI | RGCGCY | 1 cut(s) | 1068 |
| BfuAI | ACCTGC | 3 cut(s) | 122, 150, 520 |
| Bme1390I | CCNGG | 3 cut(s) | 291, 536, 647 |
| Bme18I | GGWCC | 1 cut(s) | 562 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 858 |
| BmgT120I | GGNCC | 4 cut(s) | 203, 562, 696, 1084 |
| BmiI | GGNNCC | 4 cut(s) | 533, 679, 1085, 1301 |
| BmrFI | CCNGG | 3 cut(s) | 291, 536, 647 |
| BmsI | GCATC | 2 cut(s) | 813, 1102 |
| BmtI | GCTAGC | 2 cut(s) | 131, 767 |
| BpiI | GAAGAC | 2 cut(s) | 807, 854 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 443, 475 |
| BpmI | CTGGAG | 1 cut(s) | 130 |
| Bpu10I | CCTNAGC | 3 cut(s) | 35, 123, 489 |
| Bpu14I | TTCGAA | 1 cut(s) | 965 |
| BpuMI | CCSGG | 1 cut(s) | 536 |
| BsaAI | YACGTR | 1 cut(s) | 914 |
| BsaI | GGTCTC | 2 cut(s) | 57, 273 |
| BsaJI | CCNNGG | 2 cut(s) | 558, 809 |
| BsaWI | WCCGGW | 2 cut(s) | 528, 829 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 528, 535, 541 |
| Bse118I | RCCGGY | 2 cut(s) | 528, 829 |
| Bse21I | CCTNAGG | 2 cut(s) | 57, 182 |
| Bse3DI | GCAATG | 1 cut(s) | 454 |
| BseBI | CCWGG | 2 cut(s) | 291, 647 |
| BseDI | CCNNGG | 2 cut(s) | 558, 809 |
| BseGI | GGATG | 2 cut(s) | 70, 950 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 528, 535, 541 |
| BseMI | GCAATG | 1 cut(s) | 454 |
| BseMII | CTCAG | 9 cut(s) | 48, 129, 173, 284, 296, 338, 402, 480, 810 |
| BseRI | GAGGAG | 1 cut(s) | 74 |
| BshFI | GGCC | 5 cut(s) | 45, 187, 204, 697, 1086 |
| BshNI | GGYRCC | 2 cut(s) | 531, 1299 |
| BshTI | ACCGGT | 2 cut(s) | 528, 829 |
| BsiHKAI | GWGCWC | 1 cut(s) | 116 |
| BsiSI | CCGG | 3 cut(s) | 529, 536, 830 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 528, 535, 541 |
| BsmAI | GTCTC | 5 cut(s) | 57, 273, 343, 523, 1351 |
| BsnI | GGCC | 5 cut(s) | 45, 187, 204, 697, 1086 |
| Bso31I | GGTCTC | 2 cut(s) | 57, 273 |
| Bsp119I | TTCGAA | 1 cut(s) | 965 |
| Bsp1286I | GDGCHC | 1 cut(s) | 116 |
| Bsp1407I | TGTACA | 1 cut(s) | 1340 |
| Bsp143I | GATC | 5 cut(s) | 400, 467, 749, 1228, 1348 |
| BspACI | CCGC | 1 cut(s) | 1176 |
| BspANI | GGCC | 5 cut(s) | 45, 187, 204, 697, 1086 |
| BspCNI | CTCAG | 9 cut(s) | 49, 128, 174, 283, 295, 339, 401, 481, 811 |
| BspHI | TCATGA | 1 cut(s) | 1225 |
| BspLI | GGNNCC | 4 cut(s) | 533, 679, 1085, 1301 |
| BspMAI | CTGCAG | 2 cut(s) | 517, 1072 |
| BspMI | ACCTGC | 3 cut(s) | 122, 150, 520 |
| BspOI | GCTAGC | 2 cut(s) | 131, 767 |
| BspPI | GGATC | 3 cut(s) | 475, 757, 1356 |
| BspT104I | TTCGAA | 1 cut(s) | 965 |
| BspT107I | GGYRCC | 2 cut(s) | 531, 1299 |
| BspTNI | GGTCTC | 2 cut(s) | 57, 273 |
| BsrDI | GCAATG | 1 cut(s) | 454 |
| BsrFI | RCCGGY | 2 cut(s) | 528, 829 |
| BsrGI | TGTACA | 1 cut(s) | 1340 |
| BssAI | RCCGGY | 2 cut(s) | 528, 829 |
| BssECI | CCNNGG | 2 cut(s) | 558, 809 |
| BssMI | GATC | 5 cut(s) | 400, 467, 749, 1228, 1348 |
| BssT1I | CCWWGG | 2 cut(s) | 558, 809 |
| Bst2UI | CCWGG | 2 cut(s) | 291, 647 |
| Bst4CI | ACNGT | 4 cut(s) | 578, 1148, 1254, 1268 |
| Bst6I | CTCTTC | 4 cut(s) | 146, 191, 216, 1113 |
| BstAUI | TGTACA | 1 cut(s) | 1340 |
| BstBAI | YACGTR | 1 cut(s) | 914 |
| BstBI | TTCGAA | 1 cut(s) | 965 |
| BstC8I | GCNNGC | 5 cut(s) | 129, 425, 695, 765, 1088 |
| BstF5I | GGATG | 2 cut(s) | 70, 950 |
| BstH2I | RGCGCY | 1 cut(s) | 1068 |
| BstHHI | GCGC | 1 cut(s) | 1067 |
| BstKTI | GATC | 5 cut(s) | 403, 470, 752, 1231, 1351 |
| BstMAI | GTCTC | 5 cut(s) | 57, 273, 343, 523, 1351 |
| BstMBI | GATC | 5 cut(s) | 400, 467, 749, 1228, 1348 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 111, 594, 597, 600, 684, 984, 993, 1002, 1325 |
| BstNI | CCWGG | 2 cut(s) | 291, 647 |
| BstSCI | CCNGG | 3 cut(s) | 289, 534, 645 |
| BstSFI | CTRYAG | 3 cut(s) | 513, 1068, 1365 |
| BstV2I | GAAGAC | 2 cut(s) | 807, 854 |
| BstX2I | RGATCY | 1 cut(s) | 1348 |
| BstYI | RGATCY | 1 cut(s) | 1348 |
| Bsu36I | CCTNAGG | 2 cut(s) | 57, 182 |
| BsuRI | GGCC | 5 cut(s) | 45, 187, 204, 697, 1086 |
| BtsCI | GGATG | 2 cut(s) | 70, 950 |
| BtsI | GCAGTG | 1 cut(s) | 501 |
| BtsIMutI | CAGTG | 2 cut(s) | 123, 501 |
| BveI | ACCTGC | 3 cut(s) | 122, 150, 520 |
| Cac8I | GCNNGC | 5 cut(s) | 129, 425, 695, 765, 1088 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1097 |
| CciI | TCATGA | 1 cut(s) | 1225 |
| CfoI | GCGC | 1 cut(s) | 1067 |
| Cfr10I | RCCGGY | 2 cut(s) | 528, 829 |
| Cfr13I | GGNCC | 4 cut(s) | 203, 562, 696, 1084 |
| Csp6I | GTAC | 4 cut(s) | 395, 532, 660, 1341 |
| CspAI | ACCGGT | 2 cut(s) | 528, 829 |
| CviAII | CATG | 8 cut(s) | 95, 101, 245, 671, 850, 874, 1009, 1226 |
| CviQI | GTAC | 4 cut(s) | 395, 532, 660, 1341 |
| DpnI | GATC | 5 cut(s) | 402, 469, 751, 1230, 1350 |
| DpnII | GATC | 5 cut(s) | 400, 467, 749, 1228, 1348 |
| DriI | GACNNNNNGTC | 1 cut(s) | 858 |
| Eam1104I | CTCTTC | 4 cut(s) | 146, 191, 216, 1113 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 858 |
| EarI | CTCTTC | 4 cut(s) | 146, 191, 216, 1113 |
| Ecl136II | GAGCTC | 1 cut(s) | 114 |
| Eco130I | CCWWGG | 2 cut(s) | 558, 809 |
| Eco147I | AGGCCT | 2 cut(s) | 45, 187 |
| Eco24I | GRGCYC | 1 cut(s) | 116 |
| Eco31I | GGTCTC | 2 cut(s) | 57, 273 |
| Eco47I | GGWCC | 1 cut(s) | 562 |
| Eco47III | AGCGCT | 1 cut(s) | 1066 |
| Eco53kI | GAGCTC | 1 cut(s) | 114 |
| Eco57I | CTGAAG | 4 cut(s) | 823, 958, 1314, 1337 |
| Eco72I | CACGTG | 1 cut(s) | 914 |
| Eco81I | CCTNAGG | 2 cut(s) | 57, 182 |
| EcoICRI | GAGCTC | 1 cut(s) | 114 |
| EcoO109I | RGGNCCY | 3 cut(s) | 562, 696, 1084 |
| EcoRI | GAATTC | 2 cut(s) | 325, 499 |
| EcoRII | CCWGG | 2 cut(s) | 289, 645 |
| EcoT14I | CCWWGG | 2 cut(s) | 558, 809 |
| EcoT38I | GRGCYC | 1 cut(s) | 116 |
| ErhI | CCWWGG | 2 cut(s) | 558, 809 |
| FaeI | CATG | 8 cut(s) | 98, 104, 248, 674, 853, 877, 1012, 1229 |
| FatI | CATG | 8 cut(s) | 94, 100, 244, 670, 849, 873, 1008, 1225 |
| FbaI | TGATCA | 2 cut(s) | 400, 1228 |
| FblI | GTMKAC | 2 cut(s) | 136, 834 |
| FokI | GGATG | 2 cut(s) | 77, 937 |
| FriOI | GRGCYC | 1 cut(s) | 116 |
| FspBI | CTAG | 3 cut(s) | 128, 764, 846 |
| GlaI | GCGC | 1 cut(s) | 1066 |
| GsuI | CTGGAG | 1 cut(s) | 130 |
| HaeII | RGCGCY | 1 cut(s) | 1068 |
| HaeIII | GGCC | 5 cut(s) | 45, 187, 204, 697, 1086 |
| HapII | CCGG | 3 cut(s) | 529, 536, 830 |
| HhaI | GCGC | 1 cut(s) | 1067 |
| Hin1II | CATG | 8 cut(s) | 98, 104, 248, 674, 853, 877, 1012, 1229 |
| Hin6I | GCGC | 1 cut(s) | 1065 |
| HinP1I | GCGC | 1 cut(s) | 1065 |
| HindIII | AAGCTT | 3 cut(s) | 71, 1317, 1326 |
| HinfI | GANTC | 1 cut(s) | 962 |
| HpaII | CCGG | 3 cut(s) | 529, 536, 830 |
| HphI | GGTGA | 1 cut(s) | 79 |
| Hpy166II | GTNNAC | 3 cut(s) | 137, 835, 1341 |
| Hpy188III | TCNNGA | 3 cut(s) | 56, 404, 1226 |
| Hpy8I | GTNNAC | 3 cut(s) | 137, 835, 1341 |
| HpyAV | CCTTC | 4 cut(s) | 288, 668, 933, 982 |
| HpyCH4III | ACNGT | 4 cut(s) | 578, 1148, 1254, 1268 |
| HpyCH4IV | ACGT | 1 cut(s) | 913 |
| HpyCH4V | TGCA | 9 cut(s) | 159, 248, 333, 515, 693, 1018, 1070, 1115, 1277 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 111, 594, 597, 600, 684, 984, 993, 1002, 1325 |
| HpySE526I | ACGT | 1 cut(s) | 913 |
| Hsp92II | CATG | 8 cut(s) | 98, 104, 248, 674, 853, 877, 1012, 1229 |
| HspAI | GCGC | 1 cut(s) | 1065 |
| KpnI | GGTACC | 1 cut(s) | 535 |
| Ksp22I | TGATCA | 2 cut(s) | 400, 1228 |
| Kzo9I | GATC | 5 cut(s) | 400, 467, 749, 1228, 1348 |
| LmnI | GCTCC | 3 cut(s) | 111, 560, 683 |
| LweI | GCATC | 2 cut(s) | 813, 1102 |
| MaeI | CTAG | 3 cut(s) | 128, 764, 846 |
| MaeII | ACGT | 1 cut(s) | 913 |
| MaeIII | GTNAC | 2 cut(s) | 285, 578 |
| MalI | GATC | 5 cut(s) | 402, 469, 751, 1230, 1350 |
| MboI | GATC | 5 cut(s) | 400, 467, 749, 1228, 1348 |
| MflI | RGATCY | 1 cut(s) | 1348 |
| MhlI | GDGCHC | 1 cut(s) | 116 |
| MluCI | AATT | 9 cut(s) | 79, 175, 226, 316, 325, 499, 607, 742, 946 |
| MmeI | TCCRAC | 1 cut(s) | 893 |
| MroXI | GAANNNNTTC | 1 cut(s) | 971 |
| MseI | TTAA | 3 cut(s) | 164, 336, 621 |
| MslI | CAYNNNNRTG | 2 cut(s) | 99, 914 |
| MspI | CCGG | 3 cut(s) | 529, 536, 830 |
| MspR9I | CCNGG | 3 cut(s) | 291, 536, 647 |
| MvaI | CCWGG | 2 cut(s) | 291, 647 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 111, 594, 597, 600, 684, 984, 993, 1002, 1325 |
| NciI | CCSGG | 1 cut(s) | 536 |
| NdeII | GATC | 5 cut(s) | 400, 467, 749, 1228, 1348 |
| NheI | GCTAGC | 2 cut(s) | 127, 763 |
| NlaIII | CATG | 8 cut(s) | 98, 104, 248, 674, 853, 877, 1012, 1229 |
| NlaIV | GGNNCC | 4 cut(s) | 533, 679, 1085, 1301 |
| NspV | TTCGAA | 1 cut(s) | 965 |
| OliI | CACNNNNGTG | 1 cut(s) | 914 |
| PagI | TCATGA | 1 cut(s) | 1225 |
| PaqCI | CACCTGC | 1 cut(s) | 520 |
| PceI | AGGCCT | 2 cut(s) | 45, 187 |
| PdmI | GAANNNNTTC | 1 cut(s) | 971 |
| PfeI | GAWTC | 1 cut(s) | 962 |
| PfoI | TCCNGGA | 1 cut(s) | 645 |
| PinAI | ACCGGT | 2 cut(s) | 528, 829 |
| PmaCI | CACGTG | 1 cut(s) | 914 |
| PmlI | CACGTG | 1 cut(s) | 914 |
| Ppu21I | YACGTR | 1 cut(s) | 914 |
| PpuMI | RGGWCCY | 1 cut(s) | 562 |
| Psp124BI | GAGCTC | 1 cut(s) | 116 |
| Psp5II | RGGWCCY | 1 cut(s) | 562 |
| Psp6I | CCWGG | 2 cut(s) | 289, 645 |
| PspCI | CACGTG | 1 cut(s) | 914 |
| PspGI | CCWGG | 2 cut(s) | 289, 645 |
| PspN4I | GGNNCC | 4 cut(s) | 533, 679, 1085, 1301 |
| PspPI | GGNCC | 4 cut(s) | 203, 562, 696, 1084 |
| PspPPI | RGGWCCY | 1 cut(s) | 562 |
| PstI | CTGCAG | 2 cut(s) | 517, 1072 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1097 |
| PsuI | RGATCY | 1 cut(s) | 1348 |
| RsaI | GTAC | 4 cut(s) | 396, 533, 661, 1342 |
| RsaNI | GTAC | 4 cut(s) | 395, 532, 660, 1341 |
| RseI | CAYNNNNRTG | 2 cut(s) | 99, 914 |
| SacI | GAGCTC | 1 cut(s) | 116 |
| SaqAI | TTAA | 3 cut(s) | 164, 336, 621 |
| Sau3AI | GATC | 5 cut(s) | 400, 467, 749, 1228, 1348 |
| Sau96I | GGNCC | 4 cut(s) | 203, 562, 696, 1084 |
| ScrFI | CCNGG | 3 cut(s) | 291, 536, 647 |
| SduI | GDGCHC | 1 cut(s) | 116 |
| SfaNI | GCATC | 2 cut(s) | 813, 1102 |
| SfcI | CTRYAG | 3 cut(s) | 513, 1068, 1365 |
| SfuI | TTCGAA | 1 cut(s) | 965 |
| SinI | GGWCC | 1 cut(s) | 562 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 99, 914 |
| Sse9I | AATT | 9 cut(s) | 79, 175, 226, 316, 325, 499, 607, 742, 946 |
| SseBI | AGGCCT | 2 cut(s) | 45, 187 |
| SsiI | CCGC | 1 cut(s) | 1176 |
| SspMI | CTAG | 3 cut(s) | 128, 764, 846 |
| SstI | GAGCTC | 1 cut(s) | 116 |
| StuI | AGGCCT | 2 cut(s) | 45, 187 |
| StyD4I | CCNGG | 3 cut(s) | 289, 534, 645 |
| StyI | CCWWGG | 2 cut(s) | 558, 809 |
| TaaI | ACNGT | 4 cut(s) | 578, 1148, 1254, 1268 |
| TaiI | ACGT | 1 cut(s) | 916 |
| TaqI | TCGA | 1 cut(s) | 965 |
| TasI | AATT | 9 cut(s) | 79, 175, 226, 316, 325, 499, 607, 742, 946 |
| TatI | WGTACW | 1 cut(s) | 1340 |
| TfiI | GAWTC | 1 cut(s) | 962 |
| Tru1I | TTAA | 3 cut(s) | 164, 336, 621 |
| Tru9I | TTAA | 3 cut(s) | 164, 336, 621 |
| TscAI | CASTG | 2 cut(s) | 123, 501 |
| TspDTI | ATGAA | 5 cut(s) | 233, 489, 687, 716, 939 |
| TspRI | CASTG | 2 cut(s) | 123, 501 |
| VpaK11BI | GGWCC | 1 cut(s) | 562 |
| XapI | RAATTY | 5 cut(s) | 226, 316, 325, 499, 607 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 743 |
| XmiI | GTMKAC | 2 cut(s) | 136, 834 |
| XmnI | GAANNNNTTC | 1 cut(s) | 971 |
| XspI | CTAG | 3 cut(s) | 128, 764, 846 |