FvH4_6g09630

Serine threonine-protein kinase STN8

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
5744130 .. 5746851
2722 bp
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UTR
Exon/CDS
Intron
FvH4_6g09630.t1

Sequence Viewer

Length: 1506 bp
ATGGCTTATCTGCCTTCTCCAAGCTTAACTACACTTAAACACAACCCGAAACCTCTATTTTACTCTCCGCTAAAACCCAAATCGCTTGACAATCTCTGCTTCTTGACAAACCAATTCAAGGTTCATCCACATAGATGTAATGCATTCTTTGATGACATCCCTGGAAATGTGTTGGAGAACACTTTGCATTTGGAGCAGTTTCCTGCTTTTCAATATGGGATCATGGAGTTTCAGAGAGTTACAGGTGACCTTTCAGAGAAACAGAAATGGGGTGTTCTGGTTTTTGCTGGGATAACATGGATATACTTAACTGCAAGGCCAGGTATTCTCTTAGGTGCCATTGATGCATACCTACTTGCTCCACTGCAACTGGCTTTGGATAGTGTGGCTGGAAGGAGAAGATTGAAGATGACTGATTTTGTGATTGGGGACAAGTTGGGAGAAGGGTCTTTCGGGGTTGTTTATTCTGGGGCCATTGTTCCGAAGAACATGAATGTTGAAGAGAGAATGCAGAAGAGTGGAAGGGGAAAAGCTTTGCAGCTGGATGAGAGGTTTAAGGAGAAGGTCATCCTCAAAAAGGTGAAGGTAGAAATGCAAGGGGCTGAAGAATGCGGTGAAGTCGAGGAGTGGTTCAATTACAGGTTGTCTAGAGCAGCACCTGAAACATGTGCTACTTTCCTGGGAAGTTTTGTTGCTGATAGAACAAGTTCACAGTTTACAAAGGGTGGAAAGTGGCTTGTTTGGAAATTTGAGGGAAACCGGAATCTTGCTGATTACATGACAGATCGGAAATTCCCTTTTAACTTGGAATCTGTCATGTTTGGACGTGTCTTGCAAGATGTAGACTCTGTCAAACGCAGTGCCTTGGTCATCAAGCAAATAATGCGACAGATTATAACTTCGCTCAAAAAAATCCATGACACAGGCATTGTTCACCGAGATATAAAGCCAGCAAATCTAGTAGTGACAAAAAAGGGGAAGATCAAGCTCATCGATTTTGGGGCAGCCACGGACCTCCGGATTGGGAAGAACTTTATTCCAAACCGAGGCATGCTTGACCCCGACTTCTGTCCTCCTGAACTATATGTGCTCCCAGAGGAAACACCGGTGCCTCCTCCAGAACCTATTGCGGCAGTTTTTTCTCCTATTCTTTGGCAGCTGAACAGTCCTGATCTTTTTGATATGTATTCTGCTGGTATCATTCTATTGCAAATGGCGGTACCATCCTTAAGGTCTGCGGCAGGCTTGAAAAATTTCAATGGGGAGATAAAAAGATTTGGATACGACTTGAATAAATGGAGAGAGTCTACTCGCTTGAGGCCTGACTTATCACTTCTTGATCTCGATTCGGGTAGAGGATGGGATTTGGCTACAAAGCTGGTCTCAGAGAGAGGTTCCCTAAGAAGGGGAAGATTATCAGCAGCAGCTGCTCTGAGGCATCCTTACTTCTTTTTAGCTGCTGACCAGGCAGCTGCAGTTCTTTCAAAATTAAGTTTCACCAAATAG

Protein Analysis

502

Amino Acids

56.33

Weight (kDa)

9.42

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 142 - 360 4.2e-09 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 275 - 339 4.4e-08 ABC1 atypical kinase-like domain
Pkinase PF00069 285 - 361 8e-18 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013246)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 896
Acc65I GGTACC 1 cut(s) 1219
AccB1I GGYRCC 3 cut(s) 335, 1108, 1219
AccI GTMKAC 2 cut(s) 843, 1307
AccIII TCCGGA 1 cut(s) 1017
AciI CCGC 5 cut(s) 68, 612, 1130, 1217, 1238
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 3 cut(s) 746, 791, 1252
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 1 cut(s) 1221
AfiI CCNNNNNNNGG 5 cut(s) 118, 577, 1046, 1404, 1405
AflII CTTAAG 1 cut(s) 1228
AflIII ACRYGT 2 cut(s) 665, 826
AgeI ACCGGT 1 cut(s) 1105
AgsI TTSAA 9 cut(s) 118, 212, 406, 500, 634, 1249, 1258, 1291, 1485
AjiI CACGTC 1 cut(s) 827
AjnI CCWGG 4 cut(s) 160, 319, 678, 1464
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 9 cut(s) 24, 533, 541, 988, 1159, 1378, 1427, 1457, 1472
AluI AGCT 9 cut(s) 24, 533, 541, 988, 1159, 1378, 1427, 1457, 1472
Alw21I GWGCWC 1 cut(s) 1092
Alw26I GTCTC 1 cut(s) 1387
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 2 cut(s) 659, 1427
Aor13HI TCCGGA 1 cut(s) 1017
AoxI GGCC 3 cut(s) 317, 471, 1319
ApoI RAATTY 3 cut(s) 746, 791, 1252
AsiGI ACCGGT 1 cut(s) 1105
Asp700I GAANNNNTTC 2 cut(s) 706, 1253
Asp718I GGTACC 1 cut(s) 1219
AspS9I GGNCC 2 cut(s) 471, 1012
AsuHPI GGTGA 5 cut(s) 257, 592, 626, 926, 1489
AvaII GGWCC 1 cut(s) 1012
BanI GGYRCC 3 cut(s) 335, 1108, 1219
Bbv12I GWGCWC 1 cut(s) 1092
BccI CCATC 2 cut(s) 1231, 1353
BciT130I CCWGG 4 cut(s) 162, 321, 680, 1466
BciVI GTATCC 1 cut(s) 1274
BcoDI GTCTC 1 cut(s) 1387
BfaI CTAG 2 cut(s) 648, 959
BfmI CTRYAG 1 cut(s) 1473
BfrI CTTAAG 1 cut(s) 1228
BfuI GTATCC 1 cut(s) 1274
Bme1390I CCNGG 4 cut(s) 162, 321, 680, 1466
Bme18I GGWCC 1 cut(s) 1012
BmgBI CACGTC 1 cut(s) 827
BmgT120I GGNCC 2 cut(s) 471, 1012
BmiI GGNNCC 5 cut(s) 337, 472, 1110, 1221, 1396
BmrFI CCNGG 4 cut(s) 162, 321, 680, 1466
BmsI GCATC 2 cut(s) 334, 1447
BoxI GACNNNNGTC 1 cut(s) 1068
BpmI CTGGAG 1 cut(s) 1101
BpuEI CTTGAG 1 cut(s) 1336
Bsa29I ATCGAT 1 cut(s) 993
BsaI GGTCTC 1 cut(s) 1387
BsaJI CCNNGG 5 cut(s) 160, 679, 864, 1008, 1045
BsaWI WCCGGW 3 cut(s) 759, 1017, 1105
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 577, 1046, 1404, 1405
Bse118I RCCGGY 1 cut(s) 1105
Bse1I ACTGG 1 cut(s) 375
BseAI TCCGGA 1 cut(s) 1017
BseBI CCWGG 4 cut(s) 162, 321, 680, 1466
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 5 cut(s) 160, 679, 864, 1008, 1045
BseGI GGATG 7 cut(s) 124, 156, 550, 567, 1223, 1364, 1438
BseLI CCNNNNNNNGG 5 cut(s) 118, 577, 1046, 1404, 1405
BseMII CTCAG 2 cut(s) 1398, 1424
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 2 cut(s) 638, 1104
BseYI CCCAGC 1 cut(s) 287
BshFI GGCC 3 cut(s) 319, 473, 1321
BshNI GGYRCC 3 cut(s) 335, 1108, 1219
BshTI ACCGGT 1 cut(s) 1105
BshVI ATCGAT 1 cut(s) 993
BsiHKAI GWGCWC 1 cut(s) 1092
BsiSI CCGG 3 cut(s) 760, 1018, 1106
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 5 cut(s) 118, 577, 1046, 1404, 1405
BsmAI GTCTC 1 cut(s) 1387
BsmFI GGGAC 1 cut(s) 443
BsmI GAATGC 3 cut(s) 143, 513, 614
BsnI GGCC 3 cut(s) 319, 473, 1321
Bso31I GGTCTC 1 cut(s) 1387
Bsp1286I GDGCHC 1 cut(s) 1092
Bsp13I TCCGGA 1 cut(s) 1017
Bsp143I GATC 5 cut(s) 219, 784, 981, 1171, 1339
BspACI CCGC 5 cut(s) 68, 612, 1130, 1217, 1238
BspANI GGCC 3 cut(s) 319, 473, 1321
BspCNI CTCAG 2 cut(s) 1397, 1425
BspDI ATCGAT 1 cut(s) 993
BspEI TCCGGA 1 cut(s) 1017
BspLI GGNNCC 5 cut(s) 337, 472, 1110, 1221, 1396
BspMAI CTGCAG 1 cut(s) 1477
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 3 cut(s) 335, 1108, 1219
BspTI CTTAAG 1 cut(s) 1228
BspTNI GGTCTC 1 cut(s) 1387
BsrFI RCCGGY 1 cut(s) 1105
BsrI ACTGG 1 cut(s) 375
BssAI RCCGGY 1 cut(s) 1105
BssECI CCNNGG 5 cut(s) 160, 679, 864, 1008, 1045
BssMI GATC 5 cut(s) 219, 784, 981, 1171, 1339
BssT1I CCWWGG 1 cut(s) 864
Bst2UI CCWGG 4 cut(s) 162, 321, 680, 1466
Bst4CI ACNGT 2 cut(s) 714, 1166
Bst6I CTCTTC 2 cut(s) 495, 509
BstAFI CTTAAG 1 cut(s) 1228
BstAPI GCANNNNNTGC 2 cut(s) 883, 1427
BstC8I GCNNGC 3 cut(s) 951, 1052, 1243
BstDEI CTNAG 4 cut(s) 331, 1384, 1400, 1433
BstDSI CCRYGG 1 cut(s) 1008
BstEII GGTNACC 1 cut(s) 245
BstENI CCTNNNNNAGG 1 cut(s) 575
BstF5I GGATG 7 cut(s) 124, 156, 550, 567, 1223, 1364, 1438
BstKTI GATC 5 cut(s) 222, 787, 984, 1174, 1342
BstMAI GTCTC 1 cut(s) 1387
BstMBI GATC 5 cut(s) 219, 784, 981, 1171, 1339
BstMWI GCNNNNNNNGC 5 cut(s) 193, 344, 883, 1427, 1466
BstNI CCWGG 4 cut(s) 162, 321, 680, 1466
BstNSI RCATGY 2 cut(s) 669, 1054
BstPAI GACNNNNGTC 1 cut(s) 1068
BstPI GGTNACC 1 cut(s) 245
BstSCI CCNGG 4 cut(s) 160, 319, 678, 1464
BstSFI CTRYAG 1 cut(s) 1473
Bsu15I ATCGAT 1 cut(s) 993
BsuI GTATCC 1 cut(s) 1274
BsuRI GGCC 3 cut(s) 319, 473, 1321
BsuTUI ATCGAT 1 cut(s) 993
BtgI CCRYGG 1 cut(s) 1008
BtrI CACGTC 1 cut(s) 827
BtsCI GGATG 7 cut(s) 124, 156, 550, 567, 1223, 1364, 1438
BtsI GCAGTG 2 cut(s) 362, 865
BtsIMutI CAGTG 2 cut(s) 362, 865
Cac8I GCNNGC 3 cut(s) 951, 1052, 1243
CaiI CAGNNNCTG 2 cut(s) 659, 1427
Cfr10I RCCGGY 1 cut(s) 1105
Cfr13I GGNCC 2 cut(s) 471, 1012
ClaI ATCGAT 1 cut(s) 993
Csp6I GTAC 1 cut(s) 1220
CspAI ACCGGT 1 cut(s) 1105
CviAII CATG 8 cut(s) 223, 297, 490, 666, 778, 817, 917, 1051
CviQI GTAC 1 cut(s) 1220
DdeI CTNAG 4 cut(s) 331, 1384, 1400, 1433
DpnI GATC 5 cut(s) 221, 786, 983, 1173, 1341
DpnII GATC 5 cut(s) 219, 784, 981, 1171, 1339
Eam1104I CTCTTC 2 cut(s) 495, 509
EarI CTCTTC 2 cut(s) 495, 509
Eco130I CCWWGG 1 cut(s) 864
Eco147I AGGCCT 1 cut(s) 1321
Eco31I GGTCTC 1 cut(s) 1387
Eco47I GGWCC 1 cut(s) 1012
Eco57I CTGAAG 1 cut(s) 624
Eco91I GGTNACC 1 cut(s) 245
EcoNI CCTNNNNNAGG 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 245
EcoRII CCWGG 4 cut(s) 160, 319, 678, 1464
EcoT14I CCWWGG 1 cut(s) 864
EcoT22I ATGCAT 2 cut(s) 145, 349
ErhI CCWWGG 1 cut(s) 864
FaeI CATG 8 cut(s) 226, 300, 493, 669, 781, 820, 920, 1054
FaqI GGGAC 1 cut(s) 443
FatI CATG 8 cut(s) 222, 296, 489, 665, 777, 816, 916, 1050
FblI GTMKAC 2 cut(s) 843, 1307
FokI GGATG 7 cut(s) 111, 143, 554, 557, 1210, 1371, 1425
FspBI CTAG 2 cut(s) 648, 959
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 1101
HaeIII GGCC 3 cut(s) 319, 473, 1321
HapII CCGG 3 cut(s) 760, 1018, 1106
Hin1II CATG 8 cut(s) 226, 300, 493, 669, 781, 820, 920, 1054
HindIII AAGCTT 2 cut(s) 22, 531
HinfI GANTC 5 cut(s) 763, 809, 845, 1304, 1346
HpaII CCGG 3 cut(s) 760, 1018, 1106
HphI GGTGA 5 cut(s) 257, 592, 626, 926, 1489
Hpy166II GTNNAC 5 cut(s) 710, 717, 844, 934, 1308
Hpy188I TCNGA 6 cut(s) 234, 256, 483, 789, 1387, 1434
Hpy188III TCNNGA 8 cut(s) 103, 648, 1018, 1076, 1118, 1169, 1337, 1343
Hpy8I GTNNAC 5 cut(s) 710, 717, 844, 934, 1308
HpyAV CCTTC 7 cut(s) 24, 387, 437, 516, 556, 577, 1398
HpyCH4III ACNGT 2 cut(s) 714, 1166
HpyCH4IV ACGT 1 cut(s) 826
HpyF10VI GCNNNNNNNGC 5 cut(s) 193, 344, 883, 1427, 1466
HpyF3I CTNAG 4 cut(s) 331, 1384, 1400, 1433
HpySE526I ACGT 1 cut(s) 826
Hsp92II CATG 8 cut(s) 226, 300, 493, 669, 781, 820, 920, 1054
Kpn2I TCCGGA 1 cut(s) 1017
KpnI GGTACC 1 cut(s) 1223
Kzo9I GATC 5 cut(s) 219, 784, 981, 1171, 1339
LmnI GCTCC 3 cut(s) 193, 364, 1095
LweI GCATC 2 cut(s) 334, 1447
MaeI CTAG 2 cut(s) 648, 959
MaeII ACGT 1 cut(s) 826
MaeIII GTNAC 3 cut(s) 238, 245, 964
MalI GATC 5 cut(s) 221, 786, 983, 1173, 1341
MboI GATC 5 cut(s) 219, 784, 981, 1171, 1339
MboII GAAGA 9 cut(s) 411, 418, 496, 512, 526, 617, 991, 1039, 1422
MhlI GDGCHC 1 cut(s) 1092
MluCI AATT 6 cut(s) 113, 634, 746, 791, 1252, 1487
MlyI GAGTC 2 cut(s) 839, 1313
MmeI TCCRAC 1 cut(s) 153
Mph1103I ATGCAT 2 cut(s) 145, 349
MroI TCCGGA 1 cut(s) 1017
MroXI GAANNNNTTC 2 cut(s) 706, 1253
MseI TTAA 7 cut(s) 26, 36, 308, 555, 801, 1229, 1490
MslI CAYNNNNRTG 1 cut(s) 133
MspA1I CMGCKG 4 cut(s) 541, 1159, 1427, 1472
MspCI CTTAAG 1 cut(s) 1228
MspI CCGG 3 cut(s) 760, 1018, 1106
MspR9I CCNGG 4 cut(s) 162, 321, 680, 1466
Mva1269I GAATGC 3 cut(s) 143, 513, 614
MvaI CCWGG 4 cut(s) 162, 321, 680, 1466
MwoI GCNNNNNNNGC 5 cut(s) 193, 344, 883, 1427, 1466
NdeII GATC 5 cut(s) 219, 784, 981, 1171, 1339
NlaIII CATG 8 cut(s) 226, 300, 493, 669, 781, 820, 920, 1054
NlaIV GGNNCC 5 cut(s) 337, 472, 1110, 1221, 1396
NmuCI GTSAC 2 cut(s) 245, 964
NsiI ATGCAT 2 cut(s) 145, 349
NspI RCATGY 2 cut(s) 669, 1054
PaeI GCATGC 1 cut(s) 1054
PceI AGGCCT 1 cut(s) 1321
PciI ACATGT 1 cut(s) 665
PctI GAATGC 3 cut(s) 143, 513, 614
PdmI GAANNNNTTC 2 cut(s) 706, 1253
PfeI GAWTC 3 cut(s) 763, 809, 1346
PflFI GACNNNGTC 1 cut(s) 848
PinAI ACCGGT 1 cut(s) 1105
PleI GAGTC 2 cut(s) 839, 1312
PpsI GAGTC 2 cut(s) 839, 1312
PscI ACATGT 1 cut(s) 665
PshAI GACNNNNGTC 1 cut(s) 1068
PsiI TTATAA 1 cut(s) 896
Psp6I CCWGG 4 cut(s) 160, 319, 678, 1464
PspEI GGTNACC 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 4 cut(s) 160, 319, 678, 1464
PspN4I GGNNCC 5 cut(s) 337, 472, 1110, 1221, 1396
PspPI GGNCC 2 cut(s) 471, 1012
PstI CTGCAG 1 cut(s) 1477
PstNI CAGNNNCTG 2 cut(s) 659, 1427
PsyI GACNNNGTC 1 cut(s) 848
PvuII CAGCTG 4 cut(s) 541, 1159, 1427, 1472
RsaI GTAC 1 cut(s) 1221
RsaNI GTAC 1 cut(s) 1220
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 7 cut(s) 26, 36, 308, 555, 801, 1229, 1490
Sau3AI GATC 5 cut(s) 219, 784, 981, 1171, 1339
Sau96I GGNCC 2 cut(s) 471, 1012
SchI GAGTC 2 cut(s) 839, 1313
ScrFI CCNGG 4 cut(s) 162, 321, 680, 1466
SduI GDGCHC 1 cut(s) 1092
SfaNI GCATC 2 cut(s) 334, 1447
SfcI CTRYAG 1 cut(s) 1473
SgrAI CRCCGGYG 1 cut(s) 1105
SinI GGWCC 1 cut(s) 1012
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 2 cut(s) 1228, 1315
SmoI CTYRAG 2 cut(s) 1228, 1315
SphI GCATGC 1 cut(s) 1054
Sse9I AATT 6 cut(s) 113, 634, 746, 791, 1252, 1487
SseBI AGGCCT 1 cut(s) 1321
SsiI CCGC 5 cut(s) 68, 612, 1130, 1217, 1238
SspMI CTAG 2 cut(s) 648, 959
StuI AGGCCT 1 cut(s) 1321
StyD4I CCNGG 4 cut(s) 160, 319, 678, 1464
StyI CCWWGG 1 cut(s) 864
TaaI ACNGT 2 cut(s) 714, 1166
TaiI ACGT 1 cut(s) 829
TaqI TCGA 3 cut(s) 621, 993, 1344
TasI AATT 6 cut(s) 113, 634, 746, 791, 1252, 1487
TauI GCSGC 2 cut(s) 1133, 1241
TfiI GAWTC 3 cut(s) 763, 809, 1346
Tru1I TTAA 7 cut(s) 26, 36, 308, 555, 801, 1229, 1490
Tru9I TTAA 7 cut(s) 26, 36, 308, 555, 801, 1229, 1490
TscAI CASTG 2 cut(s) 369, 865
TseFI GTSAC 2 cut(s) 245, 964
Tsp45I GTSAC 2 cut(s) 245, 964
TspDTI ATGAA 2 cut(s) 113, 506
TspGWI ACGGA 1 cut(s) 1025
TspRI CASTG 2 cut(s) 369, 865
Tth111I GACNNNGTC 1 cut(s) 848
Vha464I CTTAAG 1 cut(s) 1228
VpaK11BI GGWCC 1 cut(s) 1012
XagI CCTNNNNNAGG 1 cut(s) 575
XapI RAATTY 3 cut(s) 746, 791, 1252
XbaI TCTAGA 1 cut(s) 647
XceI RCATGY 2 cut(s) 669, 1054
XmiI GTMKAC 2 cut(s) 843, 1307
XmnI GAANNNNTTC 2 cut(s) 706, 1253
XspI CTAG 2 cut(s) 648, 959
Zsp2I ATGCAT 2 cut(s) 145, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.