Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035433.1

Orthogroup ID

OG0013246

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 710

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035433.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 616 bp

gttggagaacactcttcatttggagcagtttcctccttttcaatatgggatcatggagtttcagaaagttacagaggacctttcagagacacagaaatgggggtttctggtttttgctgggataacgtggatatacttaactgcaaggccaggtattctcttaggtgccattgatgcataccttcttgctcctctgcaactggctttggatagtttggctggaaggagaagattgaagatgactgattttgtgattggggacaagttgggagaagggtctttcggcgttgtttattctggggcaattgttccaaagaatatgaatgttgaggagagagtgcagaagagaggaaggggaaaagctttgcagttggatcagaggtttaaggataaggtcatcctcaagaaggtgaaggttggaatgcagggggcagaagaatgtggcgaattcgaggagtggttcaactacaggctgtctagagcagcacctgaaacatgtgctgcttttctgggaagttttgttgctgataaaacaagttcacagtttaccaagggtggaaagtggcttgtttggaaatttgaggtactcaaacacatttggggatcacttgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010109 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0031323 GO:0036211 GO:0042548 GO:0042549 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043467 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

204

Amino Acids

23.03

Weight (kDa)

9.0

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01920 AT5G01920
fragaria_vesca	FvH4_6g09630
malus_domestica	MD04G1176200.v1.1 MD12G1190500.v1.1
prunus_persica	Prupe.6G295600_v2.0.a1
pyrus_communis	pycom04g15540
rosa_chinensis	RchiOBHm_Chr3g0460271
rosa_laevigata	RLG00000025029
rosa_multiflora	Rmu_co8344035.1_g000001 Rmu_sc0003763.1_g000001 Rmu_sc0035433.1_g000001
rosa_rugosa	Rorug03G0041200
rosa_samantha	Rh3AG099100 Rh3BG103000 Rh3CG104600 Rh3DG104000
rosa_wichuraiana	Rw3G008400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	165
AclWI	GGATC	3 cut(s)	57, 382, 611
AcsI	RAATTY	2 cut(s)	447, 576
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	1 cut(s)	407
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	42, 236, 464
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	3 cut(s)	57, 382, 611
AlwNI	CAGNNNCTG	1 cut(s)	489
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	483, 501
ApoI	RAATTY	2 cut(s)	447, 576
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	488, 495
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	478
BfmI	CTRYAG	1 cut(s)	467
BisI	GCNGC	2 cut(s)	484, 502
BlsI	GCNGC	2 cut(s)	485, 503
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	3 cut(s)	181, 345, 468
BseXI	GCAGC	2 cut(s)	488, 495
BseYI	CCCAGC	1 cut(s)	117
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	49, 374, 603
BspANI	GGCC	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	167
BspPI	GGATC	3 cut(s)	57, 382, 611
BspT107I	GGYRCC	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	3 cut(s)	49, 374, 603
BssT1I	CCWWGG	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	2 cut(s)	19, 339
BstDEI	CTNAG	1 cut(s)	161
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	3 cut(s)	52, 377, 606
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	3 cut(s)	49, 374, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	488, 495
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	397
CaiI	CAGNNNCTG	1 cut(s)	489
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	2 cut(s)	53, 496
CviJI	RGCY	6 cut(s)	149, 204, 219, 363, 473, 566
CviKI_1	RGCY	6 cut(s)	149, 204, 219, 363, 473, 566
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	3 cut(s)	51, 376, 605
DpnII	GATC	3 cut(s)	49, 374, 603
Eam1104I	CTCTTC	2 cut(s)	19, 339
EarI	CTCTTC	2 cut(s)	19, 339
Eco130I	CCWWGG	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	2 cut(s)	56, 499
FaiI	YATR	6 cut(s)	46, 54, 134, 179, 321, 497
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	2 cut(s)	52, 495
Fnu4HI	GCNGC	2 cut(s)	484, 502
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	484, 502
FspBI	CTAG	1 cut(s)	478
GluI	GCNGC	2 cut(s)	484, 502
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	56, 499
HindIII	AAGCTT	1 cut(s)	361
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	2 cut(s)	540, 547
Hpy188I	TCNGA	3 cut(s)	64, 86, 379
Hpy188III	TCNNGA	2 cut(s)	404, 478
Hpy8I	GTNNAC	2 cut(s)	540, 547
HpyAV	CCTTC	6 cut(s)	192, 217, 267, 346, 401, 407
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	6 cut(s)	144, 177, 197, 341, 368, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	56, 499
Kzo9I	GATC	3 cut(s)	49, 374, 603
LmnI	GCTCC	2 cut(s)	23, 194
Lsp1109I	GCAGC	2 cut(s)	488, 495
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	478
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	3 cut(s)	51, 376, 605
MboI	GATC	3 cut(s)	49, 374, 603
MboII	GAAGA	5 cut(s)	6, 241, 248, 356, 447
MfeI	CAATTG	1 cut(s)	304
MluCI	AATT	3 cut(s)	304, 447, 576
MmeI	TCCRAC	2 cut(s)	352, 398
MnlI	CCTC	9 cut(s)	43, 68, 202, 323, 342, 373, 411, 446, 575
Mph1103I	ATGCAT	1 cut(s)	179
MseI	TTAA	3 cut(s)	138, 385, 614
MslI	CAYNNNNRTG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeII	GATC	3 cut(s)	49, 374, 603
NlaIII	CATG	2 cut(s)	56, 499
NlaIV	GGNNCC	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	179
NspI	RCATGY	1 cut(s)	499
PciI	ACATGT	1 cut(s)	495
PctI	GAATGC	1 cut(s)	427
PkrI	GCNGC	2 cut(s)	485, 503
PpuMI	RGGWCCY	1 cut(s)	77
PscI	ACATGT	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	149
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	77
PspPPI	RGGWCCY	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	489
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	138, 385, 614
SatI	GCNGC	2 cut(s)	484, 502
Sau3AI	GATC	3 cut(s)	49, 374, 603
Sau96I	GGNCC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	151
SfaNI	GCATC	1 cut(s)	164
SfcI	CTRYAG	1 cut(s)	467
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	3 cut(s)	304, 447, 576
SspMI	CTAG	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	451
TasI	AATT	3 cut(s)	304, 447, 576
Tru1I	TTAA	3 cut(s)	138, 385, 614
Tru9I	TTAA	3 cut(s)	138, 385, 614
TseI	GCWGC	2 cut(s)	483, 501
TspDTI	ATGAA	2 cut(s)	6, 336
VpaK11BI	GGWCC	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	2 cut(s)	447, 576
XbaI	TCTAGA	1 cut(s)	477
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	1 cut(s)	478
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.